• 미생물학회지
• /
• 제31권2호
• /
• pp.175-178
• /
• 1993

Alkaline .alpha.-amylase expressed in the transformant, Baciollus subtills MB809, containing alkaline amylase gene cloned from alkalophilic Bacillus sp. AL-8, was purified through for step separation processes. The purified alkaline .alpha.-amylase had molecular weight of app[roximately 59, 000 daltons on SDS-PAGE and Sephaex G-100 gel filtration. Amino acid sequence of terminal portion of the enzyme was analyzed with pure amylase eluted form the SDS-PAGE gel. N-terminal amino acid sequence of .alpha.-amylase was determined by the Edman degradation method and resulted in $NH_{2}$-ser-thr-ala-pro-ser-(ile)-lys-ala-gly-thr-(ile)-leu. For C-terminal amino acid sequencing, purified .alpha.-amylase was digested with carboxypuptidase A and B, and reverse-phase HPLC gradient elution system resulted in -thr-trp-pro-lys-COOH.

• Journal of Microbiology and Biotechnology
• /
• 제8권6호
• /
• pp.639-644
• /
• 1998

Extracellular serine proteases were isolated from a soil bacterium, alkalophilic coryneform bacterium TU-19, which have been grown in a liquid medium optimized at 3$0^{\circ}C$ and pH 10.0. Three different sizes, 120 kDa (protease I), 80 kDa (protease II), and 45 kDa (protease III), of serine pro teases were purified using Sephadex G-150 and QAE-Sephadex chromatography (Kang et al. 1995. Agric. Chem Biotech. 38: 534-540). SDS-PAGE showed that the 120 kDa protease was degraded into the 80 kDa protease in 20 mM Tris-HCI (pH 8.0) buffer solution. This degradation was enhanced in the presence of 0.5 M NaCl and 5 mM EDTA, but was inhibited in the presence of 5 mM $CaCl_2$. These results indicated that the $Ca^{2＋}$ ion seems to stabilize the 120 kDa protease like other proteases derived from Bacillus species. The $NH_2$-terminal amino acid sequences of the 10 residues of both proteases were completely identical: Met-Asn-Thr-Gln-Asn-Ser-Phe-Leu-Ile-Lys. In contrast to this, the 80 kDa protease has 1.5 times higher specific activity than the 120 kDa protease does (Kang et al. 1995. Agric. Chern. Biotech. 38: 534-540). Therefore the C-terminal of the 120 kDa protease seems to be autolyzed to the 80 kDa protease but this autolysis did not decrease the protease activity. Optimum pH and temperature of both 80 kDa and 120 kDa proteases were pH 10.5 and $45^{\circ}C$, respectively, and pH and thermal stability were almost identical. Several divalent ions except the $Fe^{2＋}$ ion showed similar effects on activities of both proteases, which are similarly resistant to three different detergents.

• BMB Reports
• /
• 제37권5호
• /
• pp.574-581
• /
• 2004

The full-length cDNA of the lumbrokinase fraction 6 (F6) protease gene of Lumbricus rubellus was amplified using an mRNA template, sequenced and expressed in E. coli cells. The F6 protease gene consisted of pro- and mature sequences by gene sequence analysis, and the protease was translated and modified into active mature polypeptide by N-terminal amino acid sequence analysis of the F6 protease. The pro-region of F6 protease consisted of the 44 residues from methionine-1 to lysine-44, and the mature polypeptide sequence (239 amino acid residues and one stop codon; 720 bp) started from isoleucine-45 and continued to the terminal residue. F6 protease gene clones having pro-mature sequence and mature sequence produced inclusion bodies in E. coli cells. When inclusion bodies were orally administrated rats, generated thrombus weight in the rat' venous was reduced by approximately 60% versus controls. When the inclusion bodies were solubilized in pepsin and/or trypsin solutions, the solubilized enzymes showed hemolytic activity in vitro. It was concluded the F6 protease has hemolytic activity, and that it is composed of pro- and mature regions.

• BMB Reports
• /
• 제28권5호
• /
• pp.398-401
• /
• 1995

Two fibrinolytic enzymes from the autolysate of Lumbricus rubellus were purified in homogeneous form. Their molecular sizes were 31,000 (Enz1) and 35,000 (Enz2) Da. respectively. However, the N-Terminal amino acid sequences of Enz1 and Enz2 were exactly the same: Ile-Val-Gly-Gly-Ile-Glu-Ala-Arg-Pro-Tyr-Glu-Phe-Pro-Trp-Gln-. These results indicate that Enz1 is a shortened form of Enz2 formed during autolysis. When a synthetic substrate, Ile-Pro-Arg-pNA, was used, the catalytic activity were observed in the pH range of 5-10 and the kinetic parameters including $K_m$ (1.6 ${\mu}m$) and $V_{max}$ (40 nmol/jmin/mg) were almost identical between the two enzymes. However, the fibrinolytic activity of Enz2 was at least 1.25 times higher than that of Enz1, suggesting that the C-terminal region of Enz2 is important in fibrinolysis but not in amidolysis. Furtheimore. fibrinolytic activity of the enzymes was increased by the addition of the lipid extracted from L. rubellus in the presence of $MgCl_2$ or $CaCl_2$. The stimulatary effect of lipid on Enz2 was higher compared to Enz1.

• Journal of Applied Biological Chemistry
• /
• 제44권3호
• /
• pp.113-118
• /
• 2001

Xylose (glucose) isomerase was purified to homogeneity from cell-extracts of Streptomyces chibaensis J-59 via ammonium sulfate precipitation followed by chromatography on DEAE-cellulose, and gel filtration on Sephacryl S-300. The purified enzyme is a homotetramer with a native molecular mass of 180 kDa and a subunit molecular mass of 44 kDa. The amino acid N-terminal sequence of glucose isomerase from S. chibaensis J-59 was determined to be Ser-Tyr-Gln-Pro-Thr-Pro-Glu-Asp-Arg-Phe-Thr-Phe-Gly-Leu. The first 14 amino acids of the N-terminal sequence of the enzyme showed strong analogies with N-terminal sequences of glucose isomerase produced by other Streptomyces spp. The optimum pH and temperature for activity were 7.5 and 85, respectively. The purified enzyme required $Mg^{2+}$, $Co^{2+}$, and $Mn^{2+}$ for the activity, $Mg^{2+}$ being the most effective. The enzyme was not inhibited by $Ca^{2+}$, but was inhibited by $Hg^{2+}$, $Ag^+$, and $Cu^{2+}$. The $K_m$, $V_{max}$, and $k_{cat}$ values of S. chibaensis J-59 isomerase for glucose were 83 mM, 40.9 U/mg, and $1,843min^{-1}$, respectively. In the presence of $Co^{2+}$, cell-free enzymes retained 100% without loss of activities by the heat-treatment at $70^{\circ}C$ for 7 days. The enzyme retained 50% residual activity after heating at $85^{\circ}C$ for 13.5 h, at $90^{\circ}C$ for 126 min. The enzyme is more thermostable than any other glucose isomerases of Streptomyces spp.

• Molecules and Cells
• /
• 제25권1호
• /
• pp.43-49
• /
• 2008

Cancer Osaka thyroid, also known as Tpl-2 (Cot) is a member of the MAP3K kinase family and plays a key role in the regulation of the immune response to pro-inflammatory stimuli such as lipopolysaccharide (LPS) and tumour necrosis $factor-{\alpha}$ ($TNF-{\alpha}$). A series of Cot constructs with an N-terminal 6xHis tag were transiently expressed in HEK293 cells: $Cot_{130-399}$ (kinase domain), $Cot_{1-388}$ (N-terminal and kinase do-mains), $Cot_{1-413}$, $Cot_{1-438}$ (containing a putative PEST sequence), $Cot_{1-457}$ (containing both PEST and degron sequences) and $Cot_{1-467}$ (full-length protein). These Cot proteins were pulled down using an anti-6xHis antibody and separated by 2D electrophoresis. The gels were silver-stained and 21 proteins were detected that did not appear, or had substantially reduced intensity, in the control sample. Three of these were identified by MS and MS/MS analysis as Hsp90, Hsp70 and Grp78. Hsp90 appeared to bind to the kinase domain of Cot and this interaction was further investigated using co-immuno-precipitation with both overexpressed Cot in HEK293 cells and endogenous Cot in Hela cells.

• 미생물학회지
• /
• 제54권1호
• /
• pp.60-68
• /
• 2018

남극 해양세균 Pseudoalteromonas arctica PAMC 21717로부터 저온활성 alkaline protease (Pro21717)를 부분정제하였다. Pro21717 효소 추출액은 skim milk를 포함하는 zymogram gel 상에서 약 37 kDa (낮은 활성)과 74 kDa (높은 활성) 위치에서 두 개의 뚜렷한 투명밴드(clear zone)를 형성하였다. 단백질 분해활성을 나타내는 두 개의 효소단백질은 동일한 N-말단 아미노산 서열을 가지고 있었으며, 하나의 유전자에서 발현된 미성숙 단백질(precursor)이 37 kDa 크기의 단백질분해효소로 성숙화과정을 거친 후 74 kDa 크기로 이량체화됨으로써 좀 더 높은 활성을 가지는 것으로 판단된다. Pro21717은 $0-40^{\circ}C$ (최고활성 온도 $40^{\circ}C$) 온도 범위에서 단백질분해활성을 나타내었고 pH 5.0-10.0 (최적 pH 9.0) 범위에서 효소활성을 유지하였다. 주목할만한 특성으로써, Pro21717은 $40^{\circ}C$에서의 최고 효소활성(100%) 대비, $0^{\circ}C$와 $10^{\circ}C$에서 각각 30%와 45%의 높은 저온활성을 나타내었다. 또한 다양한 합성 펩타이드류에 대해 분해활성을 나타내는 Pro21717은 $Cu^{2+}$에 의해 활성이 증가하였으며, 시판용 세탁세제(commercial detergent formulation)에 포함되어 있는 다양한 종류의 계면활성제, 화학성분, 금속이온에 의해 활성이 감소되지 않았다. 전반적으로 저온활성 Pro21717은 글로벌 상업용효소 생산회사 Novozymes이 시판하고 있는 중온성 효소 Subtilisin Carlsberg (trademark Alcalase)에 버금가는 유용한 효소학적 특성이 있는 동시에 상대적으로 더 높은 저온활성을 보여주고 있다. 위의 실험결과들은, Pro21717은 $15^{\circ}C$ 이하의 차가운 수돗물에서도 세척력을 유지하는 새로운 세탁세제 효소첨가제로서의 개발 가능성을 보여주고 있다.

• Journal of Life Science
• /
• 제9권1호
• /
• pp.26-34
• /
• 1999

A thermostable pullulanase has been isolated and purified from Thermus caldophilus GK-24 to a homogeneity by gel-filtration and ion-exchange chromatography. The specific activity of the purified enzyme was 431-fold increase from the crude culture broth with a recovery of 11.4%. The purified enzyme showed $M_{r}$ of 65 kDa on denaturated and natural conditions. The pI of the enzyme was 6.1 and Schiff staining was negative, suggesting that the enzyme is not a glycoprotein. The enzyme was most active at pH 5.5. The activity was maximal at $75^{\cire}C$ and stable up to $95^{\cire}C$ for 30 min at pH 5.5. The enzyme was stable to incubation from pH 3.5 to pH 8.0 at $4^{\cire}C$ for 24hr. The presence of pullulan protected the enzyme from heat inactivation, the extent depending upon the substrate concentration. The activity of the enzyme was simulated by $Mn^{2+}$ ion, }$Ni^{2+}$, $Ca^{2+}$, $Co^{2+}$ ions. The enzyme hydrolyzed the ${\alpha}$-1,6-linkages of amylopectin, glycogens, ${\alpha}$, ${\beta}$-limited dextrin, and pullulan. The enzyme caused the complete hydrolysis of pullulan to maltotriose and the activity was inhibited by $\alpha$, $\beta$, or $\gamma$-cyclodextrins. The $NH_{2}$-terminal amino acid sequence [(Ala-Pro-Gln-(Asp of Tyr)-Asn-Leu-Leu-Xaa-ILe-Gly-Ala(Ser)] was compared with known sequences of various sources and that was compared with known sequences of various sources and that was different from those of bacterial and plant enzymes, suggesting that the enzymes are structurally different.

• 생명과학회지
• /
• 제8권5호
• /
• pp.614-621
• /
• 1998

열안정성 inulinase를 분비하는 Penicillium sp.를 돼지 감자 서식지의 토양으로부터 분리하여 이 균주의 inulinase를 50%-80% 염석, DEAE-Sephacel column chromatography, Toyopearl HW 65 F column chromatography에 의해 정제하여 inulinase 활성을 가진 단일 band를 얻었다. 이 band의 단백질을 polya-cryamide gel electrophoresis 후 추출하여 inulinase 활성을 가지는 것으로 확인되었다. 이 단백질의 분자량은 SDS-PAGE에 의해 약 77,000 dalton으로 추정되었고, 최종 정제도는 53.3배이었다. 정제된 효소의 효소학적 성질을 조사한 결과, 최적온도는 약 6$0^{\circ}C$이었고, 열 안정성은 30-5$0^{\circ}C$에서 비교적 안정하였다. pH 4에서 가장 높은 활성을 나타냈으며, pH 4-5에서는 비교적 안정했고 염기성에서는 아주 낮은 활성을 나타내었다. 금속이온과 다른 화학물질의 영향을 조사한 결과 1mM의 $MnCl_2$와 $CaCl_2$에 의해 활성이 증가했으며 특히, $MnCl_2$는 1.7배까지 활성을 증가시켰다. 그러나, 1mM의 $CuCl_2$,$HgCl_2$와 1mM EDTA 시에는 활성이 저해되었다. TLC분석결과 모든 산물이 monosaccharide였으므로 이 효소는 exo-acting inu-linase로 추정되었고, inulin에 대한 이 효소의 $K_M$치는 $2.2\times10^{-3}$이었다. 이 효소의 결정된 N-terminal 아미노산 배열은 $NH_2$-X-Glu-Tyr-Thr-Glu-Lys/Leu-Tyr-Arg-Pro이다.

• Interdisciplinary Bio Central
• /
• 제4권1호
• /
• pp.1.1-1.7
• /
• 2012

Background: The F-box proteins represent one of the largest families of proteins in eukaryotes. Apart from being a component of the ubiquitin (Ub)/26 S proteasome pathways, their regulatory roles in other cellular and developmental pathways have also been reported. One interesting feature of the genes encoding the proteins of this particular family is their variable selection patterns across different lineages. This resulted in the presence of lineage specific F-box proteins across different species. Findings: In this study, 48 non-redundant F-box proteins in E. siliculosus have been identified by a homology based approach and classified into three classes based on their variable C-terminal domains. A greater number of the F-box proteins have domains similar to the ones identified in other species. On the other hand, when the proteins having unknown or no C-terminal domain (as predicted by InterProScan) were analyzed, it was found that some of them have the polyglutamine repeats. To gain evolutionary insights on the genes encoding the F-box proteins, their selection patterns were analyzed and a strong positive selection was observed which indicated the adaptation potential of the members of this family. Moreover, four lineage specific F-box genes were found in E. siliculosus with no identified homolog in any other species. Conclusions: This study describes a genome wide in silico analysis of the F-box proteins in E. siliculosus which sheds light on their evolutionary patterns. The results presented in this study provide a strong foundation to select candidate sequences for future functional analysis.