• Journal of applied mathematics & informatics
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• 제40권3_4호
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• pp.515-530
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• 2022

A factor graph and belief propagation can be used for finding stochastic values of link weights in biological networks. However it is not easy to follow the process of use and so we presented the process with a toy network of three nodes in our prior work. We extend this work more generally and present numerical example for a network of 100 nodes.

• 한국토양비료학회지
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• 제46권6호
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• pp.673-680
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• 2013

Phosphorus accumulating microorganisms (PAOs) are influenced by various environmental factors and heavy metals. This study was performed to evaluate the effects of the selected heavy metals on the growth and phosphorus removal capacity of Bacillus sp. 3434 BRRJ, Pseudomonas aerunogisa, and Bacillus Subtilis, well known as PAOs. The heavy metals used in this study included Cu, Cd, As, and Zn. The $IC_{50}$ (median inhibition concentration) values of Bacillus sp. 3434 BRRJ for the Cu, Cd, As, and Zn were 8.07 mg $L^{-1}$, 0.18 mg $L^{-1}$, 73.62 mg $L^{-1}$ and 0.25 mg $L^{-1}$, respectively. The $IC_{50}$ values of Pseudomonas aerunogisa for the Cu, Cd, As, and Zn were 4.45 mg $L^{-1}$, 0.16 mg $L^{-1}$, 18.51 mg $L^{-1}$ and 2.34 mg $L^{-1}$, respectively. The $IC_{50}$ values of Bacillus Subtilis for the Cu, Cd, As, and Zn were 3.81 mg $L^{-1}$, 0.18 mg $L^{-1}$, 11.31 mg $L^{-1}$ and 0.47 mg $L^{-1}$, respectively. The phosphorus removal efficiencies of the three bacteria, Bacillus sp. 3434 BRRJ, Pseudomonas aerunogisa, and Bacillus subtilis were 93.12%, 71.81%, and 65.31%, respectively. Based on the results of the three PAOs obtained from the study, it appears that Bacillus sp. 3434BRRJ may have the best results in terms of their growth rate and P removal efficiencies.

• Journal of Applied Biological Chemistry
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• 제61권2호
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• pp.187-190
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• 2018

Two curcumin derivatives, demethoxycurcumin (DMC) and bisdemethoxycurcumin (BDMC), isolated from Curcuma longa were analyzed for their inhibitory activities against two isoforms of monoamine oxidase (MAO), which is involved in the catalysis of neurotransmitting monoamines. In the study, DMC and BDMC potently inhibited human MAO-B, with $IC_{50}$ values of 2.45 and $2.59{\mu}M$, respectively, and both compounds showed effective inhibitory activities against human MAO-A, with $IC_{50}$ values of 3.24 and $3.09{\mu}M$, respectively. The inhibitory activities of the two compounds were higher than those of curcumin. The removal of the methoxy or dimethoxy groups in curcumin might increase the inhibitory activities against human MAO-A and MAO-B. The inhibited activities were recovered to almost the values of the reversible references in the dialysis experiments with DMC and BDMC. DMC and BDMC showed competitive inhibition for MAO-A and MAO-B, respectively, with $K_i$ values of 0.91 and $0.80{\mu}M$, respectively. These results suggest that the two curcumin derivatives may be useful or lead compounds in the treatment of related disorders as potent reversible MAO inhibitors.

• Applied Biological Chemistry
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• 제19권1호
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• pp.51-56
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• 1976

$SO_2$ 수용액의 화학적 변화를 in vitro system에서 조사하였다. 농도가 다른 수용액이 20시간 후에 비슷한 Eh값에 도달하였으며 산성용액에서는 Eh값이 그 이상 증가하지 않았다. Eh값은 알카리성용액에서 보다는 중성용액에서 크게 증가하였고 암흑에서 보다는 광조건하에서 다소 높은 경향을 나타냈다. 유리상태의 $SO_2$함량은 아황산염의 농도가 증가하거나, 광에 노출한 경우, 또는 pH가 높은 때에 크게 감소하였다. 발생기수소는 고농도의 $SO_2$나 산성용액에서 보다는 중성 혹은 알카리성 용액에서 더욱 많이 생성되었다.

• 전기학회논문지
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• 제59권5호
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• pp.990-995
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• 2010

Harris corner detector is commonly used to detect feature points for recognizing 2-D or 3-D objects. However, the feature points calculated from both of query and target objects need to be same positions to guarantee accurate recognitions. In order to check the positions of calculated feature points, we generate a Huffman tree which is based on adjacent feature values as inputs. However, the structures of two Huffman trees will be same as long as both of a query and targets have same feature values no matter how different their positions are. In this paper, we sort feature values and calculate the Euclidean distances of coordinates between two adjacent feature values. The Huffman Tree is generated with these Euclidean distances. As a result, the information of point locations can be included in the generated Huffman tree. This is the main strategy for accurate recognitions. We call this system as the HRM(Hybrid Retrieval Machine). This system works very well even when artificial random noises are added to original data. HRM can be used to recognize biological data such as proteins, and it will curtail the costs which are required to biological experiments.

• Journal of Ecology and Environment
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• 제39권1호
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• pp.61-70
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• 2016

Major objectives of the study were to analyze chemical and biological influences of the river ecosystem on the artificial weir construction at three regions of Sejong-Weir (S_j-W), Gongju-Weir (G_j-W), and Baekje-Weir (B_j-W) during 2008-2012. After the weir construction, the discharge volume increased up to 2.9 times, and biological oxygen demand (BOD) and electrical conductivity (EC) significantly decreased (p < 0.05). Also, the decrease of total phosphorus (TP) was also evident after the weir construction, but still hyper-eutrophic conditions, based on criteria by , were maintained. Multi-metric model of Index of Biological Integrity (IBI) showed that IBI values averaged 21.0 (range: 20-22; fair condition) in the B_wc, and 14.3 (range: 12-18; poor condition) in the A_wc. The model values of IBI in S_j-W and G_j-W were significantly decreased after the weir construction. The model of Self-Organizing Map (SOM) showed that two groups (cluster I and cluster II) of B_wc and A_wc were divided in the analysis based on the clustering map trained by the SOM. Principal Component Analysis (PCA) was similar to the results of the SOM analysis. Taken together, this research suggests that the weir construction on the river modified the discharge volume and the physical habitat structures along with distinct changes of some chemical water quality. These physical and chemical factors influenced the ecosystem health, measured as a model value of IBI.

• ALGAE
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• 제23권4호
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• pp.295-300
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• 2008

Seaweed biomass was estimated using a nondestructive method in the rocky subtidal zones in Munseom, Jeju Island, Korea from July 2006 to April 2008. Seasonal samplings were done at the depth of 1, 5, 10 m using 50 x 50 cm quadrat. Mean biomass was comprised of 2,784 g wet wt m$^{-2}$ and the biomass values varied seasonally from 1,176 g wet wt m$^{-2}$ to 4,217 g wet wt m$^{-2}$ with the highest point in April. Biomass reached maximum at 5 m depth in spring, but was shifted to 10 m depth in summer. Common seaweeds appeared year round in Munseom were Codium minus, Ecklonia cava, Sargassum spp., articulated corallines and Plocamium telfairiae. Among them, E. cava showed the highest biomass (average of 1,288 g wet wt m$^{-2}$), comprising 4% of total biomass. Only 12 species’' biomass covered 98% of total value, which indicated the contribution of few common species to algal community. Seaweed biomass in Munseom represented one of the highest values in coastal regions in Korea.

• 생태와환경
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• 제40권4호
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• pp.527-536
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• 2007

In this study, we applied 10-metric health assessment model, based on the Index of Biological Integrity (IBI) during 2006 in the Changwon Stream, which is located in the Changwon city, Gyeongnam province, S. Korea, and then compared with water quality data. The Index of Biological Integrity (IBI) in the Changwon Stream varied from 18 to 38 in the watershed depending on the sampling location and averaged 30.3 (n=6) during the study. Analysis of tolerance guilds showed that the proportion of sensitive species was 13%, but tolerant and intermediate species were 34% and 53%, respectively. Qualitative Habitat Evaluation Index (QHEI) averaged 43.3 (range: 65-104, n=6) indicating non-supporting condition, based on the criteria of U.S. EPA (1993). Values of QHEI showed a typical longitudinal decreases from the headwater reach to the downstream location, except for Site 1 with a low QHEI value by artificial habitat by concrete construction. Minimum QHEI was found in Site 4 where fish diversity was minimal. Conductivity increased continuously along the gradients and especially showed abrupt increases in the downstream sites along with turbidity. Stream ecosystem health of IBI matched to the values of QHEI except for S6. Low IBI values in the sites 4 and 5 was considered to be a result of combined effects of chemical pollutions and habitat degradations. Our results support the hypotheses of Plafkin et ai. (1989) that physical habitat quality directly influences the trophic structure and species richness, and is closely associated with IBI values.

• 의료법학
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• 제10권2호
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• pp.455-492
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• 2009

(Background) Recent biotechnological breakthroughs are shedding new lights on various ethical and legal issues about human biological material. Since Rudolph Virchow, a German pathologist, had founded the medical discipline of cellular pathology, issues centering around human biological materials began to draw attention. The issues involving human biological materials were revisited with more attention along with series concerns when the human genome map was finally completed. Recently, with researches on human genes and bioengineering reaping enormous commercial values in the form of material patent, such changes require a society to reassess the present and future status of human tissue within the legal system. This in turn gave rise to a heated debate over how to protect the rights of material donors: property rule vs. no property rule. (Debate and Cases) Property rule recognizes the donors' property rights on human biological materials. Thus, donors can claim real action if there were any bleach of informed consent or a donation contract. Donors can also claim damages to the responsible party when there is an infringement of property rights. Some even uphold the concept of material patents overtaking. From the viewpoint of no property rule, human biological materials are objects separated from donors. Thus, a recipient or a third party will be held liable if there were any infringement of donor's human rights. Human biological materials should not be commercially traded and a patent based on a human biological materials research does not belong to the donor of the tissues used during the course of research. In the US, two courts, Moore v. Regents of the University of California, and Greenberg v. Miami Children's Hospital Research Institute, Inc., have already decided that research participants retain no ownership of the biological specimens they contribute to medical research. Significantly, both Moore and Greenberg cases found that the researcher had parted with all ownership rights in the tissue samples when they donated them to the institutions, even though there was no provision in the informed consent forms stating either that the participants donated their tissue or waived their rights to ownership of the tissue. These rulings were led to huge controversy over property rights on human tissues. This research supports no property rule on the ground that it can protect the human dignity and prevent humans from objectification and commercialization. Human biological materials are already parted from human bodies and should be treated differently from the engineering and researches of those materials. Donors do not retain any ownership. (Suggestions) No property rule requires a legal breakthrough in the US in terms of donors' rights protection due to the absence of punitive damages provisions. The Donor rights issue on human biological material can be addressed through prospective legislation or tax policies, price control over patent products, and wider coverage of medical insurance. (Conclusions) Amid growing awareness over commercial values of human biological materials, no property rule should be adopted in order to protect human dignity but not without revamping legal provisions. The donors' rights issue in material patents requires prospective legislation based on current uncertainties. Also should be sought are solutions in the social context and all these discussions should be based on sound medical ethics of both medical staffs and researchers.

• 대한의용생체공학회:의공학회지
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• 제14권3호
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• pp.273-282
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• 1993

This study is concerned with the temperature dependence characteristics of ultrasound parameters in biological tissues, which are basic on the noninvasive deep body temperature estimation. Used parameters are ultrasonic attenuation coefficient and sound velocity In order to accomplishment our purpose, several signal processing methods were used. Attenua4iorl coefficient was estimated by spectral difference method and sound velocity was estimated by P-P method. And we also examined these methods through a series of IN VITRO experi mentis that used tissue-mimicking phantom samples and biological tissue samples. In order to imitate the biological soft tissue two kinds of phantom samples are used, one is agar phantom sample which is composed of agar, graphite, N-propyl alcohol and distilled water, and the other is fat phantom sample which is composed of pure animal fat. And the ultrasound transmission mode and reflection mode experiments are performed on the pig's spleen, kidney and fat. As a result, it is found that the temperature characteristics are uniform in case of phan- tom samples but not in biological tissues because of complicate wave propagation within them. Consequently, the possibility of temperature measurement using ultrasound on biological tissue is confirmed and its results may contribute to the establishment of reference values of internal temperature measurement of biological tissues.