• 제목/요약/키워드: Bio-analysis

검색결과 3,847건 처리시간 0.035초

치유농업 서비스 활성화를 위한 정책 우선순위 분석 (Priority Analysis of Activation Policies for Agro-healing services)

  • 배승종;김수진;김대식
    • 농촌계획
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    • 제25권3호
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    • pp.89-102
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    • 2019
  • This study was conducted to investigate priority recognition of experts and related facility operators in establishing policies for revitalizing agro-healing services. After reviewing related studies, 5 policy division and 19 detailed sector were drawn, including improving accessibility, improving promotion and information provision method, improved public relations and information provision, diversification of facility and program, financial support, and expansion of expert and specialized institutions. A questionnaire survey was conducted on agro-healing experts, agro-healing facility operators, social welfare experts, and social welfare facility operators. The AHP analysis indicated that agro-healing experts and facility operators had the highest priority in the division of expansion of expert and specialized institutions, while social welfare experts and facility operators had the highest priority in financial support. The IPA analysis was conducted to identify the priority of each policy sector. Respondents recognized above normal importance to policy divisions, but were relatively aware of the importance of improving accessibility, with overall satisfaction level appearing to be moderate. The results of this study are expected to provide useful information for establishing agro-healing policies and for establishing effective strategies.

Application of Pac-Bio Sequencing, Trinity, and rnaSPAdes Assembly for Transcriptome Analysis in Medicinal Crop Astragalus membranaceus

  • Ji-Nam Kang;Si Myung Lee
    • 한국작물학회:학술대회논문집
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    • 한국작물학회 2022년도 추계학술대회
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    • pp.254-254
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    • 2022
  • Astragalus membranaceus (A. membranaceus) has traditionally been used as a medicinal plant in East Asia for the treatment ofvarious diseases. A. membranaceus belongs to the legume family and is known to be rich in substances such as flavonoids and saponins. Recent pharmacological studies of A. membranaceus have shown that the plant has immunomodulatory, anti-oxidant, anti-cancer, and anti-inflammatory effects. However, knowledge of major biosynthetic pathways in A. membranaceu is still lacking. Recently developed sequencing techniques enable high-quality transcriptome analysis in plants, which is recognized as an important part in elucidating the regulatory mechanisms of many plant secondary metabolic pathways. However, it is difficult to predict the number of transcripts because plant transcripts contain a large number of isoforms due to alternative splicing events, which can vary depending on the assembly platform used. In this study, we constructed three unigene sets using Pac-Bio isoform sequencing, Trinity and rnaSPAdes assembly for detailed transcriptome analysis mA. membranaceus. Furthermore, all genes involved in the flavonoid biosynthetic pathway were searched from three unigene sets, and structural comparisons and expression profiles between these genes were analyzed. The isoflavone synthesis was active in most tissues. Flavonol synthesis was mainly active in leaves and flowers, and anthocyanin synthesis was specific in flowers. Gene structural analysis revealed structural differences in the flavonoid-related genes derived from the three unigene sets. This study suggests the need for the application of multiple unigene sets for the analysis of key biosynthetic pathways in plants.

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Cloning and Phylogenetic Characterization of Coat Protein Genes of Two Isolates of Apple mosaic virus from ¡?Fuji¡? Apple

  • Lee, Gung-Pyo;Ryu, Ki-Hyun;Kim, Hyun-Ran;Kim, Chung-Sun;Lee, Dong-Woo;Kim, Jeong-Soo;Park, Min-Hye;Noh, Young-Mi;Choi, Sun-Hee;Han, Dong-Hyun;Lee, Chang-Hoo
    • The Plant Pathology Journal
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    • 제18권5호
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    • pp.259-265
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    • 2002
  • Apple mosaic virus (ApMV), a member of the genus Ilarvirus, was detected and isolated from diseased 'Fuji' apple (Malus domestica) in Korea. The coat protein (CP) genes of two ApMV strains, denoted as ApMV-Kl and ApMV-K2, were amplified by using the reverse transcription and polymerase chain reaction (RT-PCR) and were analyzed thereafter. The objectives were to define the molecular variability of genomic information of ApMV found in Korea and to develop virus-derived resistant gene source for making virus-resistant trans-genic apple. RT-PCR amplicons for the APMVS were cloned and their nucleotide sequences were determined. The CPs of ApMV-Kl and ApMV-K2 consisted of 222 and 232 amino acid residues, respectively. The identities of the CPs of the two Korean APMVS were 93.1% and 85.6% at the nucleotide and amino acid sequences, respectively. The CP of ApMV-Kl showed 46.1-100% and 43.2-100% identities to eight different ApMV strains at the nucleotide and amino acid levels, respectively. When ApMV-PV32 strain was not included in the analysis, ApMV strains shared over 83.0% and 78.6% homologies at the nucleotide and amino acid levels, respectively. ApMV strains showed heterogeneity in CP size and sequence variability. Most of the amino acid residue differences were located at the N-termini of the strains of ApMV, whereas, the middle regions and C-termini were remarkably conserved. The APMVS were 17.(1-54.5% identical with three other species of the genus Ilarviyus. ApMV strains can be classified into three subgroups (subgroups I, II, and III) based on the phylogenetic analysis of CP gene in both nucleotide and amino acid levels. Interestingly, all the strains of subgroup I were isolated from apple plants, while the strains of subgroups II and III were originated from peach, hop, or pear, The results suggest that ApMV strains co-evolved with their host plants, which may have resulted in the CP heterogeneity.

Tillage Operational Analysis Based on Soil Moisture Content, Machine Speed, and Disc Space of Compact Disc Harrow

  • Okyere, Frank Gyan;Moon, Byeong Eun;Qasim, Waqas;Basak, Jayanta Kumar;Kahn, Fawad;Kang, Dae Sik;Yoon, Yong Cheol;Kim, Hyeon Tae
    • Journal of Biosystems Engineering
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    • 제43권3호
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    • pp.161-172
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    • 2018
  • Purpose: During tillage operations, the selection of a working machine (tool) depends on the soil conditions as well as the type of tillage operation to be performed. The goal of this research was to ascertain the effects of varying working machine parameters of a compact disc harrow on tillage operations under various soil moisture content (SMC) conditions. Methods: The working machine parameters were the disc spacing and machine speed. The tillage parameters under investigation were the soil inversion ratio (SIR), tillage cutting depth (TCD), and soil clod breakage ratio (SCB). To determine the SIR, the areas of the white regions before and after tillage were obtained. The ratio of the difference of the areas of the white regions before and after tillage to the area of the white regions before tillage was considered as the SIR. The SCB was obtained as the ratio of the weight of soil clods after sieving with a mesh size of <0.02 m to the total weight of the soil clods before sieving. The soil TCD was measured using a tape measure at random points after the tillage operation. The resulting data were statistically analyzed in a one-way analysis of variance. Results: The highest soil inversion was achieved when the machine speed was 0.2 m/s with the disc spaced at 0.2 m in the 16.5% SMC. At a 0.4-m/s machine speed and 0.3-m disc spacing the highest soil breakage was achieved in the 26.5% SMC. The highest TCD was achieved at a 0.2-m/s machine speed and 0.2-m disc spacing in the 16.5% SMC. Conclusions: It was concluded that varying the working machine parameters, such as the disc spacing and machine speed, could significantly affect the soil inversion and soil clod breakage; however, it had no significant impact on the TCD.

초음파 압력장에서 미세조류 응집 거동에 관한 비정상상태 수치해석 연구 (A numerical study on the unsteady agglomeration behavior of algae in the ultrasonic wave pressure field)

  • 하지수;심성훈;정상현
    • 에너지공학
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    • 제26권4호
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    • pp.67-73
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    • 2017
  • 미세조류를 바이오 연료로 전환하여 이용하기 위해서는 미세조류의 배양, 응집 수거, 바이오 지질 추출, 에너지 전환 등 여러 공정을 거친다. 각 부분 공정 마다 필요한 비용이 발생하며 이러한 비용을 합산하여 미세조류의 에너지화로의 생산 단가가 만들어진다. 미세조류의 생산비용은 기존의 바이오 연료에 비하여 아직 높은 수준이다. 각 공정에서 생산 비용을 저감하는 것이 미세조류의 바이오 연료로서 가격 경쟁력을 높이는 것이다. 미세조류의 응집 수거는 미세조류가 물과 유사한 밀도로 물에서 분리하기가 어려운 물질이기 때문에 저비용으로 미세조류를 응집하고 수거하는 기술이 필요하다. 미세조류의 응집과 수거를 위해 초음파를 이용하는 공정은 기존 공정에 비하여 환경 위해 요소가 거의 없으며 저비용 고효율의 공정으로써 연구가 필요한 분야이다. 본 연구는 미세조류를 응집 수거하는 방법으로 초음파를 조사할 때 일어나는 유동과 미세조류 거동에 대한 메카니즘을 수치해석을 통해 규명하고자 수행 하였다. 이를 위해 미세조류가 포함된 유체를 배관에 흐를 때 초음파 압력장에서 미세조류가 응집이 일어나는 현상을 비정상상태 유동해석으로 시간 변화에 따라 속도, 압력, 미세조류의 농도 변화를 관찰하여 초음파를 이용한 미세조류 응집에 대한 최적 설계의 토대를 정립하는 것을 목적으로 수행하였다.

교배형 분석을 활용한 표고 교배균주 육성 및 자실체 발생 특성 (Characteristics of Lentinula edodes Fruiting Bodies Formed by Mono-mono Hybridization Using Mating Type Analysis)

  • 장영선;박미정;김은진;김민준;정연석;가강현
    • 한국균학회지
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    • 제51권4호
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    • pp.389-396
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    • 2023
  • 본 연구에서는 교배형 분석을 활용하여 표고의 교배균주를 육성하고 그로부터 발생한 자실체의 특성을 알아보고자 하였다. 단핵균주 분리에는 산백향과 청흥1호 품종을 이용하였는데, 산백향은 버섯으로부터 100여개의 단포자를 분리하였으며, 청흥1호는 원형질체 분리 및 재생과정을 통해 단핵균주를 얻었다. 이렇게 얻는 단핵균주는 우선 교배형 분석을 실시하였으며, 교배 가능한 조합을 확인하고 총 60개의 균주를 교배하였다. 톱밥재배는 2 kg 사각블럭배지를 이용하였으며, 배양 120일 후에 버섯 발생처리를 하였다. 그 결과 60균주의 교배성공률은 100%에 이르렀으며, 그 중 55개인 91.7%의 균주에서 버섯이 발생하였다. 모든 균주에서 정상적인 버섯이 발생하였으며, 그 중 10개 균주에서는 주름살을 온전하게 형성하지 않는 기형버섯도 발생하는 것을 확인하였다. 버섯의 형태적인 특성은 매우 다양하게 나타났으며, 이러한 특성을 사전에 파악하기 위해서는 교배모본의 특성을 평가할 수 있는 연구가 더 필요하다.

반응온도에 따른 팜 부산물(empty fruit bunch)의 열화학적 분해 특성에 관한 연구 (Study on The Thermochemical Degradation Features of Empty Fruit Bunch on The Function of Pyrolysis Temperature)

  • 이재훈;문재관;최인규;최준원
    • Journal of the Korean Wood Science and Technology
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    • 제44권3호
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    • pp.350-359
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    • 2016
  • 본 연구에서는 팜 부산물인 empty fruit bunch (EFB)의 시료 특성을 분석하고 유동형 열분해기를 이용하여 $400{\sim}550^{\circ}C$ 범위에서 체류시간 1.3초간 급속열분해 공정을 진행하였다. 또한, 반응온도에 따른 열분해 주요 산물(바이오오일, 바이오차, 가스)의 수율과 물리화학적 특성 변화를 구명하였다. EFB의 화학조성 및 원소분석을 통해 시료 내 칼륨 함량이 8400 ppm으로 많은 것을 확인하였다. 열중량분석에서 나타난 특성으로 볼 때 EFB 시료 내 칼륨의 촉매작용에 의해 셀룰로오스의 분해가 촉진된 것으로 추측된다. $500^{\circ}C$까지의 온도범위에서는 바이오오일의 수율이 증가하고 가스의 수율이 감소하였으며 바이오차는 수율에 큰 변화가 없었던 반면, $500{\sim}550^{\circ}C$까지의 온도범위에서는 바이오오일과 바이오차의 수율이 감소하였고 가스의 수율이 증가하였다. 각 조건별로 생성된 바이오오일은 수분함량 20~30%, 발열량 15~17 MJ/kg 범위의 값을 나타냈으며, 점도 11 cSt (centistoke), 전산가(total acid number) 100 mg KOH/g oil 미만으로 나타났다. 기체크로마토그래프 분석을 통해 EFB 바이오오일로부터 셀룰로오스계 화합물(9종)과 리그닌계 화합물(17종)을 확인하였다. 리그닌계 화합물 중 특히 phenol이 다량 검출되었으며 이는 전체 화합물 농도의 25%에 해당하는 양이다.

Impact of different shades of light-emitting diode on fecal microbiota and gut health in broiler chickens

  • Ianni, Andrea;Bennato, Francesca;Di Gianvittorio, Veronica;Di Domenico, Marco;Martino, Camillo;Colapietro, Martina;Camma, Cesare;Martino, Giuseppe
    • Animal Bioscience
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    • 제35권12호
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    • pp.1967-1976
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    • 2022
  • Objective: The aim of this study was to characterize the fecal microbiota of broiler chickens reared in the presence of different shades of light-emitting diode (LED) lights, correlating this information with biochemical and molecular evidence that allowed drawing conclusions on the state of health of the animals. Methods: Overall, the metagenomic approach on fecal samples was associated with evaluations on enzymes involved in the cellular response to oxidative stress: glutathione peroxidase (GPX), superoxide dismutase and catalase; while the inflammatory aspect was studied through the dosage of a proinflammatory cytokine, the interleukin 6 (IL-6), and the evaluation of the matrix metalloproteinases 2 (MMP-2) and 9 (MMP-9). Specifically, analysis was performed on distinct groups of chickens respectively raised in the presence of neutral (K = 3,300 to 3,700), cool (K = 5,500 to 6,000), and warm (K = 3,000 to 2,500) LED lightings, and a direct comparison was performed with animals reared with traditional neon lights. Results: The metagenomic analysis highlighted the presence of two most abundant bacterial phyla, the Firmicutes and the Bacteroidetes, with the latter characterized by a greater relative abundance (p<0.05) in the group of animals reared with Neutral LED light. The analysis on the enzymes involved in the antioxidant response showed an effect of the LED light, regardless of the applied shade, of reducing the expression of GPX (p<0.01), although this parameter is not correlated to an effective reduction in the tissue amount of the enzyme. Regarding the inflammatory state, no differences associated with IL-6 and MMP-9 were found; however, is noteworthy the significant reduction of MMP-2 activity in tissue samples obtained from animals subjected to illumination with neutral LED light. Conclusion: This evidence, combined with the metagenomic findings, supports a potential positive effect of neutral LED lighting on animal welfare, although these considerations must be reflected in more targeted biochemical evaluations.

The Effect of Light Intensity on the Growth and Chlorophyll Fluorescence Parameters of Three Ardisia Genus Native to Korea

  • Bo Kook Jang;Kyungtae Park;Cheol Hee Lee;Sang Yeob Lee;Ju Sung Cho
    • 한국자원식물학회:학술대회논문집
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    • 한국자원식물학회 2020년도 춘계학술대회
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    • pp.55-55
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    • 2020
  • This study investigated the growth and chlorophyll fluorescence reactions of three Ardisia genus grown under various indoor light intensity conditions with the aim of evaluating their suitability as indoor plants. Young seedlings of A. crispa (Thunb.) A.DC., A. pusilla DC., and A. japonica (Thunb.) Blume were used in the experiment. The plants were cultivated indoors for 10 weeks under different light intensities: 10, 50, 100, and 200 PPFD (μmol·m-2·s-1), and their growth was compared with that of plants cultivated in a greenhouse during the same period (mean value 236.8±20.4 PPFD at noon). Also, chlorophyll fluorescence analysis was investigated with a portable PAM fluorometer. The indoor plants were maintained at 12/12 h photoperiod, temperature at 25±1℃, and humidity at 55±3%. Irrigation frequency (once every three days) was the same for the indoors and the greenhouse. The results of growth in three Ardisia plants showed that almost all parameters except leaf number and chlorophyll content had similar levels regardless of light intensity. A. crispa and A. pusilla plants grown in 200 PPFD were investigated to have low chlorophyll contents. Meanwhile, chlorophyll fluorescence parameters differed based on light levels. In A. crispa, the Fv/Fm (0.77), DIo/RC (0.47) and Fm/Fo (4.77) parameters tended to be poor at 200 PPFD compared to those at other light intensities. Similarly, the DIo/RC, Fm/Fo, and Pi_Abs parameters of A. pusilla plant (200 PPFD) are 0.45, 4.48 and 2.42, respectively, which can be considered stress. The analysis of fluorescence in A. japonica showed that all parameters except ETo/RC had similar levels regardless of light intensity. The ETo/RC parameter was 0.49 and 0.72 in the control plants and plants 200 PPFD, respectively, which was lower than those in plants at other light intensities. Therefore, it seems that the relatively high light intensity acted as a stressor for Ardisia plants.

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나노 및 바이오 시스템 해석을 위한 탄성네트워크모델 (Elastic Network Model for Nano and Bio System Analysis)

  • 김문기
    • 한국소음진동공학회:학술대회논문집
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    • 한국소음진동공학회 2008년도 추계학술대회논문집
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    • pp.668-669
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    • 2008
  • In this paper, we introduce various coarse-grained elastic network modeling (ENM) techniques as a novel computational method for simulating atomic scale dynamics in macromolecules including DNA, RNA, protein, and polymer. In ENM, a system is modeled as a spring network among representative atoms in which each linear elastic spring is well designed to replace both bonded and nonbonded interactions among atoms in the sense of quantum mechanics. Based on this simplified system, a harmonic Hookean potential is defined and used for not only calculating intrinsic vibration modes of a given system, but also predicting its anharmonic conformational change, both of which are strongly related with its functional features. Various nano and bio applications of ENM such as fracture mechanics of nanocomposite and protein dynamics show that ENM is one of promising tools for simulating atomic scale dynamics in a more effective and efficient way comparing to the traditional molecular dynamics simulation.

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