• Title/Summary/Keyword: Artificial host

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Genetic Stability of Magnaporthe oryzae during Successive Passages through Rice Plants and on Artificial Medium

  • Park, Sook-Young;Chi, Myoung-Hwan;Milgroom, Michael G.;Kim, Hyo-Jung;Han, Seong-Sook;Kang, Seog-Chan;Lee, Yong-Hwan
    • The Plant Pathology Journal
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    • v.26 no.4
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    • pp.313-320
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    • 2010
  • Genetic instability of the rice blast fungus Magnaporthe oryzae has been suggested as a major factor underlying the rapid breakdown of host resistance in the field. However, little information is available on the mechanism of genetic instability. In this study, we assessed the stability of repetitive DNA elements and several key phenotypic traits important for pathogenesis after serially transferring two isolates though rice plants and an artificial medium. Using isolate 70-15, we obtained a total of 176 single-spore isolates from 10 successive rounds of culturing on artificial medium. Another 20 isolates were obtained from germ tubes formed at the basal and apical cells of 10 three-celled conidia. Additionally, 60 isolates were obtained from isolate KJ201 after serial transfers through rice plants and an artificial medium. No apparent differences in phenotypes, including mycelial growth, conidial morphologies, conidiation, conidial germination, appressorium formation, and virulence, or in DNA fingerprints using MGR586, MAGGY, Pot2, LINE, MG-SINE and PWL2 as probes were observed among isolates from the same parent isolate. Southern hybridization and sequence analysis of two avirulence genes, AVR-Pita1 and AVR-Pikm, showed that both genes were also maintained stably during 10 successive generations on medium and plants. However, one reversible loss of restriction fragments was found in the telomere-linked helicase gene (TLH1) family, suggesting some telomere regions may be more unstable than the rest of the genome. Taken together, our results suggest that phenotype and genotype of M. oryzae isolates do not noticeably change, at least up to 10 successive generations on a cultural medium and in host plants.

Design and Implementation of Memory-Centric Computing System for Big Data Analysis

  • Jung, Byung-Kwon
    • Journal of the Korea Society of Computer and Information
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    • v.27 no.7
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    • pp.1-7
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    • 2022
  • Recently, as the use of applications such as big data programs and machine learning programs that are driven while generating large amounts of data in the program itself becomes common, the existing main memory alone lacks memory, making it difficult to execute the program quickly. In particular, the need to derive results more quickly has emerged in a situation where it is necessary to analyze whether the entire sequence is genetically altered due to the outbreak of the coronavirus. As a result of measuring performance by applying large-capacity data to a computing system equipped with a self-developed memory pool MOCA host adapter instead of processing large-capacity data from an existing SSD, performance improved by 16% compared to the existing SSD system. In addition, in various other benchmark tests, IO performance was 92.8%, 80.6%, and 32.8% faster than SSD in computing systems equipped with memory pool MOCA host adapters such as SortSampleBam, ApplyBQSR, and GatherBamFiles by task of workflow. When analyzing large amounts of data, such as electrical dielectric pipeline analysis, it is judged that the measurement delay occurring at runtime can be reduced in the computing system equipped with the memory pool MOCA host adapter developed in this research.

Complex Formation of Adenosine 3',5'-Cyclic Monophosphate with β-Cyclodextrin: Kinetics and Mechanism by Ultrasonic Relaxation

  • Bae, Jong-Rim;Kim, Jeong-Koo;Lee, Chang-Woo
    • Bulletin of the Korean Chemical Society
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    • v.31 no.2
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    • pp.442-446
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    • 2010
  • Adenosine 3',5'-cyclic monophosphate (cAMP) is a second messenger responsible for a multitude of cellular responses. In this study, we utilized $\beta$-cyclodextrin ($\beta$-CD) as an artificial receptor with a hydrophobic cavity to elucidate the inclusion kinetics of cAMP in a hydrophobic environment using the ultrasonic relaxation method. The results revealed that the interaction of cAMP with $\beta$-CD followed a single relaxation curve as a result of host-guest interactions. The inclusion of cAMP into the $\beta$-CD cavity was found to be a diffusion-controlled reaction. The dissociation of cAMP from the $\beta$-CD cavity was slower than that of adenosine 5'-monophosphate (AMP). The syn and anti glycosyl conformations of adenine nucleotides are considered to play an important role in formation of the inclusion complex. Taken together, our findings indicate that hydrophobic interactions are involved in the inclusion complex formation of cAMP with $\beta$-CD and provide insight into the interactions of cAMP with cAMP-binding proteins.

Occurrence of Sclerotinia Rot in Four Leguminous Crops Caused by Sclerotinia sclerotiorum

  • Kim, Wan-Gyu;Hong, Sung-Kee;Lee, Sang-Yeob
    • The Plant Pathology Journal
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    • v.22 no.1
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    • pp.16-20
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    • 2006
  • Four leguminous crops grown in greenhouses and fields in Korea were surveyed from 2000 through 2002. Sclerotinia rot most severely occurred up to $60\%$ in Phaseolus vulgaris grown in greenhouses but occurred as low as $0-0.5\%$ in that grown in fields. Incidence of the disease in Pisum sativum grown in greenhouses ranged $1-5\%$, and that in Vicia Java and Vigna sinensis grown in fields was $0.8\%$ and $2\%$, respectively. Symptoms of Sclerotinia rot commonly developed on stems and pods of the crops. A total of 59 isolates of Sclerotinia species were obtained from diseased stems and pods of the crops. All of the isolates were identified as Sclerotinia sclerotiorum based on their morphological characteristics. Eight isolates of the fungus were tested for their pathogenicity to four host crops by artificial inoculation. All of the isolates induced rot symptoms on stems of the host crops tested, which were similar to those observed in the fields. The pathogenicity tests revealed that there was no significant difference in the susceptibility to the isolates among the leguminous crops tested This is the first formal report that S. sclerotiorum causes the Sclerotinia' rot of the four leguminous crops in Korea.

A Survey on Metacercariae Infection of Clonorchis sinensis on the Fish Host, Pseudorasbora parva from the Upper Stream of Phoung-tack Stream, Kyungki Province (평택호 상류 지역 참붕어에 있어서 간흡충 피낭유충의 조사성적)

  • 전계식;김태선
    • Journal of Environmental Health Sciences
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    • v.24 no.2
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    • pp.100-103
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    • 1998
  • A survey on the incidence of metacercariae infection of Clonorchis sinensis in the fresh water fish, Pseudorasbora parva which is well known as the second intermediate host for this fluke was carried out in the upper stream of Phoung-tack stream, Kyungki province during the period of October to November 1997. Forty fish in P. parva were collected by netting, or using the bait in transparent bowls from the two different districts located in Osung-myun, Phoungtack-gun and transported to the laboratory. The body length and weight were measured. They were from 5.0 to 7.6 cm in length and 1.0 to 5.0 g in weight. A total of 40 P. parva were divided 3 groups by the size (70-79, 60-69 and 50-59 mm) and were digested by artificial digestion with pepsin-Hcl solution in a 36$\circ$C incubator and then examined the infection density of metacercariae of the fresh water fish under a binocular dissecting microscope. The incidence of metacercariae infection in P. parva was 406 of 40 examined and the metacercariae detection rate showed 77.5%. The average number of metacercariae detected in P. parva was 10.2. The results of the survey indicate that Clonorchis sinensis infection may occur by consuming raw fresh water fish caught from the upper stream of Phoungtackho, Kyungki province.

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An Intelligent Residual Resource Monitoring Scheme in Cloud Computing Environments

  • Lim, JongBeom;Yu, HeonChang;Gil, Joon-Min
    • Journal of Information Processing Systems
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    • v.14 no.6
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    • pp.1480-1493
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    • 2018
  • Recently, computational intelligence has received a lot of attention from researchers due to its potential applications to artificial intelligence. In computer science, computational intelligence refers to a machine's ability to learn how to compete various tasks, such as making observations or carrying out experiments. We adopted a computational intelligence solution to monitoring residual resources in cloud computing environments. The proposed residual resource monitoring scheme periodically monitors the cloud-based host machines, so that the post migration performance of a virtual machine is as consistent with the pre-migration performance as possible. To this end, we use a novel similarity measure to find the best target host to migrate a virtual machine to. The design of the proposed residual resource monitoring scheme helps maintain the quality of service and service level agreement during the migration. We carried out a number of experimental evaluations to demonstrate the effectiveness of the proposed residual resource monitoring scheme. Our results show that the proposed scheme intelligently measures the similarities between virtual machines in cloud computing environments without causing performance degradation, whilst preserving the quality of service and service level agreement.

A Monitoring System Based on an Artificial Neural Network for Real-Time Diagnosis on Operating Status of Piping System (가스배관망 작동상태 실시간 진단용 인공신경망 기반 모니터링 시스템)

  • Jeon, Min Gyu;Cho, Gyong Rae;Lee, Kang Ki;Doh, Deog Hee
    • Transactions of the Korean Society of Mechanical Engineers B
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    • v.39 no.2
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    • pp.199-206
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    • 2015
  • In this study, a new diagnosis method which can predict the working states of a pipe or its element in realtime is proposed by using an artificial neural network. The displacement data of an inspection element of a piping system are obtained by the use of PIV (particle image velocimetry), and are used for teaching a neural network. The measurement system consists of a camera, a light source and a host computer in which the artificial neural network is installed. In order to validate the constructed monitoring system, performance test was attempted for two kinds of mobile phone of which vibration modes are known. Three values of acceleration (minimum, maximum, mean) were tested for teaching the neural network. It was verified that mean values were appropriate to be used for monitoring data. The constructed diagnosis system could monitor the operation condition of a gas pipe.

Experimental Studies on the Second Intermediate Host of Clonorchis sinensis I. Survey on the metacercariae of some trematodes in fresh-water shrimps and experimental infection of Palaemon spp. with Clonorchis cercariae (간흡충(肝吸蟲)의 제이중간숙주(第二中間宿主)에 관(關)한 연구(硏究) I. 민물 새우의 metacercaria 조사(調査) 및 간흡충(肝吸蟲) cercaria의 Palaemon spp.에 대(對)한 감염시험(感染試驗))

  • Rhee, Jae Ku
    • Korean Journal of Veterinary Research
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    • v.9 no.1
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    • pp.71-78
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    • 1969
  • The present studies were undertaken to determine accurately whether Korean native fresh-water shrimps can serve as the second intermediate host of Clonorchis sinensis. The experimental results obtained were as follows; 1. Metacercaria of Clonorchis sinensis was not discovered in 36 Macrobranchium nipponensis (De Hann), 1992 Palaemon paucidens (De Hann) and Palaemon madestus Heller, and 860 Caridina leucastica Stimpson, collected in Kimhae district, which were digested in artificial gastric juice, using binocular dissecting microscope. 2. Cercariae of the Chinese liver fluke could not approach the body wall of young shrimps due to streaming caused by their motion. 3. Young Palaemon spp. of 247 were divided into two groups and placed in two different room aquariums, one is at high temperature, the other is normal. Then they were contacted with the cercariae. Only 11 degenerated metacercariae were found in 9 Palaemon spp. It was suggested that they had died immediately or within a few days after penetration. Furthermore the temperature did not affect the infective ratio. 4. At the field experimental aquarium, no metacercaria of Clonorchis sinensis was discovered tn 100 Palaemon spp. which had been brought into contact with 5000 Parafossarulus manchouricus two trials. 5. Specific changes in the cercariae mixed with the extract of shrimps meat were not observed through the dissecting microscope. 6. These results suggest that the Korean native shrimps cannot serve as the intermediate host of Clonorchis sinensis.

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The Detection and Multiplicity of Entomopathogenic Nematodes Using Silkworms (Bombyx mori) (누에를 이용한 곤충병원성 선충의 검색 및 배양)

  • 한상미;이광길;여주홍;권해용;우순옥;이용우;백하주;한명세
    • Journal of Sericultural and Entomological Science
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    • v.45 no.2
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    • pp.103-107
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    • 2003
  • Entomopathogenic nematodes were isolated through the investigation in soils collected from cultivated and non-cultivated fields using silkworms (Bombyx mori) and Galleria mellonella trap. The detectable rate of entomopathogenic nematodes of silkworms trap was higher than the G. mellonella trap. This study indicates the detection of entomopathogenic nematodes from soils that silkworms are sensitive superior to the G. mellonella to entomopathogenic nematodes. The steinernema, rhabditidae, and diplogatroidae strains successfully cultured on the silkworms host as well as on artificial media. Reproductivity in the living silkworm larva and pupa was 1.5 to 3.5${\times}$ 10$\^$5/ nematodes per host However, G. mellonella could be multiplied less than 5${\times}$l0$\^$5/ nematodes. The dried pupa of the silkworm following mositurize was cultured 0.5 to 2${\times}$10$\^$5/) nematodes per host. The culture methods of the steinernema, rhabditidae, and diplogatroidae strains, using silkworm powder, extracted chicken intestine, and food waste fertilizer could be applicative, but rate of reproduction was low.

A Report on the Occurrence of and Crop Damage Caused by Hyphantria cunea (Drury) with in Korea (국내 미국흰불나방의 최근 발생 및 피해 보고)

  • Kim, Dong-Eon;Kil, Ji-Hyon
    • Korean journal of applied entomology
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    • v.51 no.3
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    • pp.285-293
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    • 2012
  • Occurrence Hyphantria cunea was confirmed in 35 cities and counties nationwide in 2011, each of which reported some form of crop and/or ecological damage caused by the moth. Only a larva of the black-headed form were reported to have occurred in the nation. H. cunea was found in street trees 66.7%, followed by landscape trees 19.4% and forests 13.9%. This suggests that artificial environment 86.1% suffered from H. cunea more severely than natural forests. The study identified 44 families and 102 species of host plants, and found an additional 29 species, to those which had been identified in previous studies. At present, the identified host plants of H. cunea are composed of 62 families and 219 species in total since their first appearance was reported approximately 50 years ago. Host plants include 5 species of food crops (2.3%), 6 species of vegetables (2.7%), 4 species of medicinal crops (1.8%), 1 species of industrial crops (0.5%), 13 species of fruit trees (5.9%), 6 species of other trees crops (2.7%) as well as a further 5 species of farmed crops (2.3%). Seven species of host plants (18.4%) originate from North America where Hyphantria cunea has been introduced from, while 11 species (29.0%) are from China and Japan, Europe and India were the native sources of (10.5%) of the origin with 4 species, respectively. Seventeen species of trees, including Platanus occidentalis L., Ulmus davidiana (var.) japonica (Rehder) (Nakai) and Cornus officinalis (Siebold & Zucc) were heavily noted to be heavily infected with larval populations.