• Title/Summary/Keyword: Allozyme loci

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Allozyme Variation of Pinus rigida Mill. in an F1-Hybrid Seed Orchard and Estimation of the Proportion of F1-Hybrid Seeds by Allozyme Analysis (잡종(雜種) 채종원(採種園)에서 리기다소나무의 Allozyme 변이(變異)와 Allozyme 분석(分析)에 의(依)한 잡종종자(雜種種字) 발생률(發生率)의 추정(推定))

  • Chung, Min Sup
    • Journal of Korean Society of Forest Science
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    • v.66 no.1
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    • pp.109-117
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    • 1984
  • Allozyme study for open pollinated seeds of forty nine pitch pine families in an $F_1$-hybrid seed orchard demonstrated that allozyme variants in aspartate aminotransferase(AAT), glutamate dehydrogenase(GDH) and leucine aminopeptidase(LAP) systems are encoded by at Least eight loci; five for AAT, one for GDH and two fur LAP. Allozyme variations showed polymorphisms at seven of the eight loci, except GDH. Average number of alleles examined over six loci were 2.33 and 2.67 for maternal and progeny groups, respectively. Average heterozygosity and genetic diversity computed over six loci were, respectively, 0.235 and 5.409 for maternal tree group, 0.238 and 5.569 for progeny group. The proportion of $F_1$-hybrid seeds estimated by allozyme analysis was 0.77%. The estimated proportion of $F_1$ hybrid seeds by allozyme study is in good agreement with the value 0.73% estimated by morphological study for the proportion of pitch ${\times}$ Loblolly $F_1$ hybrid seedlings at a nursery. Indications for Wahlund effect, high levels of self-fertilization and for non-random matings in the $F_1$ hybrid seed orchard call for cautions in estimating allele frequency changes and mating probabilities for the parental and progeny groups.

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Allozyme Variability in Tree of Genus Semisulcospira(Prosobranchia: Pleuroceridae) (다슬기속 3종(Prosobranchia: Pleuroceridae)에서의 도위효소 변이)

  • 정영헌;박준우;정평림;박갑만;김재진;민득영
    • The Korean Journal of Malacology
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    • v.15 no.1
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    • pp.13-20
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    • 1999
  • A horizontal starch gel electrophoresis for enzyme proteins extracted from three Korean species and one Chinese species of Semisulcospira was carried out in order to elucidate their genetic relationships. A total of 10 enzymes were employed in three different of buffer systems. Two loci from each enzyme of GAPDH, GOT, ICDH, IDH and PEP(VL); three loci from each of three enzymes, EST, PEP(LGG) and PGDH; and five loci from GPI were observed. Most of the loci in three pleurocerid species employed showed homozygous monomorphic banding patterns and some of them were specific as genetic markers between two different species. However, EST-2, PEP(LGG-3) and PGDH-1 loci in Korean S. libertina and PEP(LGG-3), PGM-1 and PGM-2 loci in Chinese S. libertina showed polymorphic banding patterns. Three Korean Semisulcospira species including S. libertina were more closely clustered in a dendrogram within the range of genetic identity values of 0.818-0.936, and these clusters were lineated with Chinese S. libertina at the value of 0.621.

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Genetic Studies of Oenothera odorata Populations in Korea Based on Isozyme Analysis

  • Huh, Hong-Wook
    • Journal of Plant Biology
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    • v.39 no.3
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    • pp.223-229
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    • 1996
  • The genetic variation in Korean evening primorse (Oeothera odorata L.) populations was examiend to estimate the level of allozyme variation within populatons using starch gel electrophoresis. 7 of 13 loci (Adh, Est-1, Est-2, Mdh-2, Pgd-2, Pgm-1, and Idh) revealed (Ps=43.2%) were polymorphic. The mean number of alleles per locus (A) and polymorphic locus (Ap) for populations were 1.64 and 2.46, respectively. The effective number of alleles (Aep) within populations relatively was low ranging from 1.08 to 1.22 with a mean of 1.14. Within populations, the mean number of allele per polymorphic loci (Ap) was 2.46, the mean number of alleles per locus (A) was 1.64, and the mean genetic diversity was 0.093. About 2.7% of the total allozyme diversity resided among populations (Mean GST=0.0274). FIS, a measure of the deviation from random mating within 13 populations, was relative low (mean FIS=0.03636). The indirect estimate of gene flow, based on the mean GST, was high (Nm=8.88). Estimates of gene flow were consistent with low levels of genetic differentiation among populations.

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Genetic Structure of Pinus rigida Mill. in an Expanding Population Originating from a Few Founder Trees (수본(數本)의 양친수(兩親樹)에 의해 전파증식(傳播増殖)중에 있는 리기다소나무 집단(集團)의 유전적(遺傳的) 구조(構造))

  • Chung, Min Sup
    • Journal of Korean Society of Forest Science
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    • v.72 no.1
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    • pp.16-26
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    • 1986
  • Allozyme study on a small pitch pine stand originating and expanded rather rapidly from a few founder trees indicated that the colonization of the pitch pine population was made progressively from the place where the founder trees located to another by moving in cohorts of seeds from a limited number of family or genetically closely related family groups in line with the succeeding generations. This pattern of migration and colonization resulted marked differences in allelic and genotypic frequencies at many of the allozyme loci between the initially colonized subpopulation on the south-facing slope and the lately colonized subpopulation on north-facing slope of a hill. It appeared that gene fixation due to inbreeding and genetic drift occurred at some loci in the pitch pine population or subpopulations. However, even in t 1e inbreeding small pitch pine population or subpopulations, a comparatively large amount of genetic diversity or heterozygosity was maintained due to the high levels of gene recombination at many of the gene loci and natural selections favoring for heterozygotes.

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Population Genetic Structure of Potentilla discolor Bunge, Rosaceae in Korea (한국내 솜양지꽃의 집단 유전 구조)

  • Huh, Man-Kyu
    • Journal of Life Science
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    • v.16 no.6
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    • pp.898-903
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    • 2006
  • The genetic diversity and population structure of fifteen Potentilla discolor Bunge populations in Korea were determined using genetic variations at 19 allozyme loci. Fourteen of the 19 loci (73.7%) showed detectable polymorphism. Genetic diversity at the species level and at the population level was high ($H_{ES}\;=\;0.215$, $H_{EP}\;=\;0.196$, respectively), whereas the extent of the population divergence was relatively low $(G_{ST}\;=\;0.069)$. Total genetic diversity values $(H_T)$ varied between 0.0 and 0.656, giving an average overall polymorphic loci of 0.292. The interlocus variation of genetic diversity within populations $(H_S)$ was high (0.274). On a per locus basis, the proportion of total genetic variation due to differences among populations $(G_{ST})$ ranged from 0.010 for Pgm-2 to 0.261 for Pgd-2 with a mean of 0.069, indicating that about 6.9% of the total allozyme variation was among populations. Wide geographic ranges, perennial herbaceous nature and the persistence of multiple generations are associated with the high level of genetic variation in P. discolor. The estimate of gene flow based on $G_{ST}$ was high among Korean populations of P. discolor (Nm = 3.36).

Genetic Diversity and Population Structure of Potentilla freyniana in Korea (한국내 세잎양지꽃의 유전적 다양성과 집단구조)

  • Huh, Man-Kyu
    • Journal of Life Science
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    • v.17 no.7 s.87
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    • pp.877-881
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    • 2007
  • The genetic diversity and population structure of Potentilla freyniana in Korea were determined using genetic variations at 19 allozyme loci. Thirteen of the 19 loci (68.4%) showed detectable polymorphism. Genetic diversity at the population level was high ($H_{EP}$ = 0.270). Total genetic diversity values ($H_T$) varied between 0.190 and 0.584, giving an average overall polymorphic loci of 0.371. The interlocus variation of genetic diversity within populations ($H_S$) was high (0.354). On a per locus basis, the proportion of total genetic variation due to differences among populations ($G_{ST}$) ranged from 0.008 for Fe-2 to 0.310 for Gpi with a mean of 0.065, indicating that about 6.5% of the total allozyme variation was among populations. Wide geographic ranges, perennial herbaceous nature and the persistence of multiple generations are associated with the high level of genetic variation in P. freyniana. The estimate of gene flow based on $G_{ST}$, was high among Korean populations of P. freyniana (Nm =3.57). Although P. freyniana usually propagated by asexually-produced ramets, I could not rule out the possibility that sexual reproduction occurred at a low rate because each ramet may produce terminal flowers.

Allozyme Variation and Population Genetic Structure of an Invasive Plant, Ageratina altissima(White Snakeroot), in Seoul

  • Chun, Young-Jin;Lee, Hyun-Woo;Lee, Eun-Ju
    • Animal cells and systems
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    • v.5 no.4
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    • pp.309-312
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    • 2001
  • Allozyme studies have been widely used to estimate genetic variation and to describe genetic structure in natural populations. In many cases, the genetic diversity of recently established populations is generally lower than that of central populations. In addition, the genetic composition of an invasive species is influenced by its History of introduction as well as its ecological characters. Ageratina altissima (L.) R. King & H. Robinson (white snakeroot) is a perennial herb native to the eastern United States and Canada, and is currently receiving much attention for its rapid invasion of the Korean forests. Starch gel electrophoresis was used to assess the genetic variability at 11 putative loci in seven introduced populations of A. altissima in Seoul. Populations of A. altissima maintained lower levels of allozyme diversity (expected heterozygosity = 0.063) than those reported for other taxa with similar ecological traits. The degree of differentiation observed among A. altissima populations was considerably low. It is suggested that the populations were recently established from only a few founders via dispersal by human activities, resulting in the loss of genetic variation.

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Observations on the Genetic Structure of Pinus densiflora Sieb. et Zucc(I) : The Young-il Population (소나무의 유전적(遺傳的) 구조(構造)에 관한 연구(硏究) (I) : 영일(迎日) 집단(集團)의 유전적(遺傳的) 구조(構造))

  • Chung, Min Sup
    • Journal of Korean Society of Forest Science
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    • v.80 no.2
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    • pp.246-254
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    • 1991
  • Genetic structure of a Pinus densiflora population consisting of two subpopulations on the north-and south-facing slopes of a mountain was studied by allozyme analysis. Allozyme variants in aspartate aminotransferase(AAT), glutmate dehydrogenase(GDH) and leucine aminopeptidase(LAP) systems are encoded, at least, by eight loci ; five for AAT, one for GDH and two for LAP. Average number of alleles examined over six loci was 3.33. Average heterozygosity and genetic diversity computed over six loci were, respectively, 0.19 and 2.76 for parental population, 0.17 and 2.22 for progeny population. Differences in allelic frequencies between maternal sources at many of the investigated loci were found and between subpopulations on the north- and south-facing slopes. Allele frequencies of maternal origin at some of the loci were significantly different from each other between the two subpopulations. Thus it appears that the matings within and between subpopulations were not random and the mountain ridge that divides the north-and south-facing slopes isolate the two suhpopulations reproductively to a great extent. Some of the genotypes both in parental and progeny(embryo) groups deviate significantly from the Hardy-Weinberg equilibrium state. It appears from the result that the pine population is originated from a few limited ancestral trees and thus consanguineous matings are prevalent in this pine population.

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Genetic Analysis of Three Overwintering Diamondback Moth, Plutella xylostella (Linne), Populations in Korea (국내 세 지역의 배추좀나방(Plutella xylostella (Linne)) 월동집단에서 나타나는 유전변이 분석)

  • 김용균;박효찬;정명섭
    • Korean journal of applied entomology
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    • v.40 no.3
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    • pp.227-233
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    • 2001
  • Four polymorphic allozymes were used for genetic analysis of overwintering populations of field diamondback moth, Plutella xylostella (Linne). Different allele frequencies were found among three local populations of Andong, Youngchon, and Yangsan in all loci. Two allozyme loci (acid phosphatase and phosphoglucomutase) showed significant deviation from Hardy-Weinberg equilibrium in allele frequencies among these populations. Estimated Nei's genetic distance varied from 0.0151 between Yangsan and Youngchon to 0.0877 between Andong and Youngchon. Compared with the previous genetic distances in this moth, a little higher genetic differentiation among these overwintering populations suggests that there would be a specific genetic bottleneck in each local population during overwintering period.

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Breeding System and Allozyme Genetic Diversity of Deutzia paniculata Nakai, an Endemic Shrub in Korea (고유종 꼬리말발도리의 생식특성과 동위효소 유전다양성)

  • Chang, Chin-Sung;Kim, Hui
    • Journal of Korean Society of Forest Science
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    • v.103 no.4
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    • pp.519-527
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    • 2014
  • Deutzia paniculata is an endemic species, which is geographically restricted within southern part of Korea. Four populations of D. paniculata were sampled across its natural range, from the smallest population, Mt. Dalum, which held less than 100 individuals, to the largest, Mt. Unmum, over 3,500 individuals. Artificial pollination study showed that D. paniculata had an obligate outcross breeding system. Major pollinators were two bee species, Lasioglossum exiliceps and Allograpta balteata (de Geer). The breeding system and patterns of allozyme variation of D. paniculata were investigated to understand the population biology and to explain on reserve designs and management proposals relevant to this species. D. paniculata held relatively low genetic variation at the eight allozyme loci surveyed. Measures of genetic variation in this species alleles per locus ($A_s=1.33$), proportion of polymorphic loci (P=23.85%), and expected heterozygosity ($H_{es}=0.110$) were similar to values reported for endemic species. Mt. Dalum population (DAL) was composed with one clone based on allozyme data. Individuals of D. paniculata were frequently included in root connected clusters. Population genetic structure between and within four populations was probably the result of shrinking effective population size and the extinctions of intervening populations. For the conservation of genetic diversity, maximum number of different genotype need to be protected based on genetic structure and mating system.