• Journal of the Korean Society for Industrial and Applied Mathematics
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• v.24 no.4
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• pp.351-362
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• 2020

Adaptive behaviors are one of ubiquitous features in evolutionary dynamics of populations, and certain adaptive behaviors can be witnessed by individuals' movements which are generally affected by local environments. In this paper, by revisiting the previous work, we investigate the sensitivity of species coexistence in the system of cyclic competition where species movement can be affected by local environments. By measuring the extinction probability through Monte-Carlo simulations, we find the relativistic effect of weights of local fitness and exchange rate for adaptive movement on species biodiversity which promotes species coexistence as the relativistic effect is intensified. In addition, by means of basins of initial conditions, we also found that adaptive movement can also affect species biodiversity with respect to the choice of initial conditions. The strong adaptive movement can eventually lead the coexistence as a globally stable state in the spatially extended system regardless of mobility.

• Genomics & Informatics
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• v.16 no.4
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• pp.28.1-28.6
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• 2018

Due to the increasing interest in synonymous codons, several codon bias-related terms were introduced. As one measure of them, the tRNA adaptation index (tAI) was invented about a decade ago. The tAI is a measure of translational efficiency for a gene and is calculated based on the abundance of intracellular tRNA and the binding strength between a codon and a tRNA. The index has been widely used in various fields of molecular evolution, genetics, and pharmacology. Afterwards, an improved version of the index, named specific tRNA adaptation index (stAI), was developed by adapting tRNA copy numbers in species. Although a subsequently developed webserver (stAIcalc) provided tools that calculated stAI values, it was not available to access pre-calculated values. In addition to about 100 species in stAIcalc, we calculated stAI values for whole coding sequences in 148 species. To enable easy access to this index, we constructed a novel web database, named STADIUM (Species-specific tRNA adaptive index compendium). STADIUM provides not only the stAI value of each gene but also statistics based on pathway-based classification. The database is expected to help researchers who have interests in codon optimality and the role of synonymous codons. STADIUM is freely available at http://stadium.pmrc.re.kr.

• Journal of the Korean Society of Environmental Restoration Technology
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• v.18 no.6
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• pp.85-95
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• 2015

Recent years, nationwide projects for ecological restoration are implemented with emerging issues on the stream ecosystem. In order to enhance effectiveness of the ecosystem restoration and reduce negative impact, the appraisal of effectiveness through the follow-up monitoring and the adaptive management process are executed in consecutive phase. In this study, planning phase, monitoring and adaptive management in Hakui stream which is part of An Yang stream restoration project is introduced as representative ongoing case of effective adaptive management. The aim of this study is to verify the adaptive management process and suggest direction of effective restoration. Restoration project of Hakui stream resulted in increasing number and diversity of species (vegetation, fish, bird, invertbrates, amphibian and reptilia) according to monitoring from 2004 to 2013, and enhancing natural river landscape by evaluation of river naturalness among 2001(before restoration), 2007 (after), 2015 (recent). However, excessive vegetation expansion or sediment deposition on channel over time caused unexpected results such as terrestrialization or degradation of habitats. Adaptive management action such as removing disturbance species (Humulus japonicus)(2007), coppicing willow (2007), release of march snail (2007), creation of wetland (2014) were implemented based on monitoring results. And then appraisal of management action was discussed.

• Molecular & Cellular Toxicology
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• v.5 no.3
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• pp.230-236
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• 2009

Acrolein, a known toxin in cigarette smoke, is the most abundant electrophilic $\alpha$, $\beta$-unsaturated aldehyde to which humans are exposed in a variety of environmental pollutants, and is also product of lipid peroxidation. Increased unsaturated aldehyde levels and reduced antioxidant status plays a major role in the pathogenesis of various diseases such as diabetes, Alzheimer's and atherosclerosis. The findings reported here show that low concentrations of acrolein induce heme oxygenase-1 (HO-1) expression in RAW 264.7 macrophages. HO-1 induction by acrolein and signal pathways was measured using reverse transcription-polymerase chain reaction, Western blot and immunofluorescence staining analyses. Inhibition of extracellular signal-regulated kinase activity significantly attenuated the induction of HO-1 protein by acrolein, while suppression of Jun N-terminal kinase and p38 activity did not affect induction of HO-1 expression. Moreover, rottlerin, an inhibitor of protein kinase $\delta$, suppressed the upregulation of HO-1 protein production, possibly involving the interaction of NF-E2-related factor 2 (Nrf2), which has a key role as a HO-1 transcription factor. Acrolein elevated the nuclear translocation of Nrf2 in nuclear extraction. The results suggest that RAW 264.7 may protect against acrolein-mediated cellular damage via the upregulation of HO-1, which is an adaptive response to oxidative stress.

• Weed & Turfgrass Science
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• v.5 no.4
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• pp.181-186
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• 2016

Three Echinochloa species inhabit various crop fields with different soil moisture conditions. Therefore, a growthpouch test was conducted to investigate adaptive diversity of six Echinochloa species, three from Korea and three from USA, toosmotic stress by assessing shoot and root growths. Echinochloa crus-galli var. praticola showed the greatest tolerance to osmoticstress in both root ($GR_{50}=1316.3g\;PEG\;L^{-1}$) and shoot ($GR_{50}=212.2g\;PEG\;L^{-1}$) growths, while Korean E. oryzicola was mostsensitive to osmotic stress in both root ($GR_{50}=116g\;PEG\;L^{-1}$) and shoot ($GR_{50}=126.2g\;PEG\;L^{-1}$) growths. Root to shoot (R/S) ratioof Echinochloa crus-galli var. praticola increased with increasing osmotic stress, while that of Korean E. oryzicola decreased, suggestingthat R/S ratio is closely related to osmotic stress tolerance in Echinochloa species. Our results clearly demonstrate that E. crus-galli var.praticola maintains high R/S ratio even under high osmotic stress, which enables this species to well adapt to dry upland condition. Incontrast, while E. oryzicola fails to maintain sufficiently high R/S ratio, resulting in poor adaptability to dry upland condition.

• Journal of Korean Society of Coastal and Ocean Engineers
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• v.23 no.1
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• pp.50-56
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• 2011

To make conservative port and coast ecosystems and creative the greenspace, We were investigated with characteristic of flora, environmental factors, types of port, adaptive species, minimum conservation area and plantation model. In 50 sites of study areas, there are 19 families and 174 species of vascular plants and 19 families and 48 species of halophytes. Dominant communities in port ecosystem contains Carex kobomugi community, Elymus mollis community, Carex pumila community, Ixeris repens community, Vitex rutundifolia community, Calystegia soldandlla community, Rosa rugosa community, Lathyrus japonica community, Salsola komarovi community, Cynodon dactylon community, Tetragonia tetragonioides community, Suaeda japonica community, Suaeda maritima community, Zoysia sinica community and Phragmites communis community. We carried out Canonical Correspondence Analysis(CCA) for ordinations on the vegetation and plant communities-environmental variable matrices in 50 sites. The communities tended to cluster into three types: Clay marsh, Sand marsh, Sand gravel marsh types. Adaptive species in habitate types are selected that sand marsh-type communities in ports contained Elymus mollis community, Ixeris repens community, Carex kobomugi community, Carex pumila community, Clay marsh-type communities contained Suaeda japonica community, Phragmites communis community, Zoysia sinica community and Suaeda maritima community, Sand gravel marsh-type communities contained Vitex rutundifolia community, Calystegia soldandlla community. We are conducted the estimation of minimal area for plantation of adaptive plant species and carried out guide line and plantation model for creation of green space in port ecosystem.

• Korean Journal of Environmental Biology
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• v.31 no.4
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• pp.333-339
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• 2013

In this study we investigated the relationship between characteristics of vegetative growth of three species of Viola (V. rossii, V. japonica, and V. dissecta var. chaerophylloides) and light in order to explain how these three species could live together under a closed space in a forest. This studywas carried out at five sites in Mudeung-san (Mt.) on 1994, 1995, and 2000 and additional investigations were performed on 2007 and 2010 at the same sites. In order to find the relationship, three main investigations were conducted: counting number of individuals for each investigated year, measuring dry mass and counting developed leaves per plant, and finding presenting patterns of each species with reference to incidence of light. As a result, we found that three species could share the closed space in a forest because of their different adaptive strategies like V. rossii as Kstrategist, V. japonica as r-strategist, and V. dissecta var. chaerophylloides as an intermediator between two species.

• Toxicological Research
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• v.35 no.4
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• pp.303-310
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• 2019

We are exposed to numerous xenobiotic electrophiles on a daily basis through the environment, lifestyle, and dietary habits. Although such reactive species have been associated with detrimental effects, recent accumulated evidence indicates that xenobiotic electrophiles appear to act as signaling molecules. In this review, we introduce our findings on 1) activation of various redox signaling pathways involved in cell proliferation, detoxification/excretion of electrophiles, quality control of cellular proteins, and cell survival during exposure to xenobiotic electrophiles at low concentrations through covalent modification of thiol groups in sensor proteins, and 2) negative regulation of reactive sulfur species (RSS) in the modulation of redox signaling and toxicity caused by xenobiotic electrophiles.

• Journal of the Korean Society of Environmental Restoration Technology
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• v.14 no.6
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• pp.111-117
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• 2011

This study attempts to facilitate climate change adaptation in conservation area by spatial planning of climate adaptation zone for endangered species. Spatial area is South Korea and select leopard cat (Prionailurus bengalensis) as a target species of this study. In order to specify the climate adaptation zone, firstly, Maximum entropy method (Maxent) was used to identify suitable habitat, and then core habitat was selected for leopard cat. Secondly, land use resistance index was evaluated and least cost distance was analyzed for target species. In this step we choose dispersal capacity of leopard cat to reflect species ecological characteristic. Finally, climate adaptation zone is described and adaptation measures are suggested. The presented approach could be generalized for application into conservation planning and restoration process. Furthermore, spatial planning of climate adaptation zone could increase heterogeneity of habitat and improve adaptive capacity of species and habitat itself.

• Korean Journal of Ecology and Environment
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• v.53 no.4
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• pp.390-407
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• 2020

This study was carried out to evaluate the restoration effect in the restored Yangjae stream and to draw up an adaptive management plan based on the results. As the result of evaluation on the restoration effect, the restored Yangjae stream was evaluated with low naturalness in both terms of the morphology of the stream and the composition and spatial distribution of vegetation. The diverse functional groups were introduced in the vegetation restoration, but the flooding regime, which is significant in the spatial distribution of riparian vegetation, were not correctly reflected. Exotic species or species that were not ecologically suitable for the location were introduced on the embankment and thus a measure to improve those problems is required. As the ecological principle was not reflected in the restoration plan, the stream was constructed as the double terrace structure. Therefore, the width of the waterway was narrowed further, and the waterfront was not designed to accommodate changes from flooding disturbance, making the micro-topography of the stream simpler and the naturalness lower. The adaptive management plan was prepared to improve those problems, and a plan for creating an ecological network was recommended to enhance the restoration effect.