• Title/Summary/Keyword: Acidic soils

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Phylogenetic Diversity of Acidophilic Sporoactinobacteria Isolated from Various Soils

  • Cho, Sung-Heun;Han, Ji-Hye;Seong, Chi-Nam;Kim, Seung-Bum
    • Journal of Microbiology
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    • v.44 no.6
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    • pp.600-606
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    • 2006
  • Spore forming actinobacteria (sporoactinobacteria) isolated from soils with an acidic pH in Pinus thunbergii forests and coal mine waste were subjected to taxonomic characterization. For the isolation of acidophilic actinobacteria, acidified starch casein agar (pH adjusted to 4-5) was used. The numbers of actinobacteria growing in acidic media were between $3.2{\times}10^4$ and $8.0{\times}10^6$ CFU/g soil. Forty three acidophilic actinobacterial strains were isolated and their 16S rDNA sequences were determined. The isolates were divided into eight distinctive phylogenetic clusters within the variation encompassed by the family Streptomycetaceae. Four clusters among them were assigned to the genus Streptacidiphilus, whereas the remaining four were assigned to Streptomyces. The clusters belonging to either Streptomyces or Streptacidiphilus did not form a monophyletic clade. The growth pH profiles indicated that the representative isolates grew best between pH 5 and 6. It is evident from this study that acidity has played a critical role in the differentiation of the family Streptomycetaceae, and also that different mechanisms might have resulted in the evolution of two groups, Streptacidiphilus (strict acidophiles) and neutrotolerant acidophilic Streptomyces. The effect of geographic separation was clearly seen among the Streptacidiphilus isolates, which may be a key factor in speciation of the genus.

Chemistry of Strong Acidic Soil on Ulsan-Jungjadong Cut-Slope Affecting Seed Germination (종자발아에 영향을 미치는 울산 정자동 절토비탈면 강산성 토양의 화학적 특성)

  • Jang, Chang-Hee;Kim, Min-Soo
    • Journal of the Korean Society of Environmental Restoration Technology
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    • v.9 no.6
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    • pp.133-142
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    • 2006
  • Occasionlly, a lot of plants withered on the marine upheaval soil, because of the potential acid sulfate soil. It was necessary to investigate the chemistry of soil, before planting on Ulsan-Jungjadong cut-slope of road construction site. Cut-slope surface soils were sampled on the every varying points in soil colour and analyzed chemically. Germination status of seeds in sample soils was investigated such as Albizzia julibrissin, Festuca arundinacea. Relationship between germination status and chemistry of soil was analyzed. The results of investigation and analysis are as follows. 1. Germination of seeds was inhibited, less than pH($H_2O$ 1 : 5) 2.63. 2. Germination of seeds was inhibited, more than EC($H_2O_2$ 1 : 5) 13.4mS. 3. Germination of seeds was inhibited, more than aluminum ion content 2.0ppm in soil solution extracted by A$H_2O$ and 6.2ppm by $H_2O_2$. 4. pH($H_2O$ 1 : 5), EC($H_2O_2$ 1 : 5) and aluminum ion content proved chemical indicators of seed germination inhibition, in case of potential acid sulfate soil.

Study of Soil Characteristics on Productivity of Flue-cured Tobacco (Nicotiana tabacum L.) I. Morphological and Chemical Characteristics of Soils in Major Districts Cultivating Cultivating Flue-cured Tobacco Plant (황색종 담배의 생산성에 관여하는 토양특성 제I보 황색종 담배 주산지 토양특성에 관한 조사, 연구)

  • Kim, Yong-Yun;Lee, Yun-Hwan;Jeong, Hun-Chae
    • Journal of the Korean Society of Tobacco Science
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    • v.9 no.1
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    • pp.35-43
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    • 1987
  • This survey was been conducted to classify the distribution of morphological and chemical characteristics of soils in the major districts cultivating flue-cured tobacco plant. The results obtained are summarized as follows; 1. Tobacco was mainly grown in local valley, 7-15% slopes, loam and sandyloam containing gravels, and productivity classes of soil were corresponded to 3-4 degree for upland crops. 2. most soils were acidic (below pH 5.5) and contained low organic matters. (below 2%) 3. Dominant soil series were SANGJU, JIGOG, SEOCTO, SAMGAG ANRYONG, SUAM, and YESAN.

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An Investigation of Characteristics of Chinese Bellflower (Platycodon grandiflorum A.) Cultivated Soil

  • Choi, Jang Nam;Lee, Wang Hyu
    • Korean Journal of Plant Resources
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    • v.31 no.6
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    • pp.660-666
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    • 2018
  • In order to understand the characteristics of soil according to the cultivation environment of Chinese bellflower (Platycodon grandiflorum A.), soil chemical properties of 12 collected soil samples from 6 cultivated fields in Okcheon, Chungbuk province in August. 2017 were analyzed. The soil pH was distributed within the range of 4.61 to 5.25 at all cultivation years and E.C (Electric Conductivity) and T-N (Total Nitrogen) of the cultivation year were not significant. Available $P_2O_5$ was higher than the average for medicinal crops and P. grandiflorum in Korea and C.E.C (Cation Exchange Capacity) was inconsistent for each cultivation year. In particularly, it was validated that the content of exchangeable cations K, Ca, Ma, and Na in this experiment was similar to that of C.E.C according to the cultivation years, because C.E.C had a high correlation with the exchangeable cations. For the available $P_2O_5$, as affected by trans-planting, 5Y-NT-H (cultivated 5 years and non-transplanted) had 58 mg/kg, while 5Y-T-H (cultivated 5 years and transplanted) had 246 mg/kg. The soil pH was found to be lower (acidic) in diseased soils than healthy soils. E.C was confirmed to be was higher in diseased soils than healthy soils except for the one cultivated for 2 years. The contents of T-N and available $P_2O_5$ were higher in diseased soil except for the one cultivated for 5 years and 11 years. The exchangeable cation K and Na tended to be higher in diseased soils rather than that in healthy soils, and the exchangeable cation Ca and Mg contents were higher in healthy soils than in diseased soils. The C.E.C of the soil was lower than that of healthy soils in all of the years except for the one which was cultivated for 5 years (transplanted).

Cyanobacterial Diversity Shifts Induced by Butachlor in Selected Indian Rice Fields in Eastern Uttar Pradesh and Western Bihar Analyzed with PCR and DGGE

  • Kumari, Nidhi;Narayan, Om Prakash;Rai, Lal Chand
    • Journal of Microbiology and Biotechnology
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    • v.22 no.1
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    • pp.1-12
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    • 2012
  • The present study examines the effects of 30 mg/kg butachlor on the cyanobacterial diversity of rice fields in Eastern Uttar Pradesh and Western Bihar in India. A total of 40 samples were grouped into three classes [(i) acidic, (ii) neutral, and (iii) alkaline soils], based on physicochemical and principle component analyses. Acidic soils mainly harbored Westillopsis, Trichormus, Anabaenopsis, and unicellular cyanobacteria; whereas Nostoc, Anabaena, Calothrix, Tolypothrix, and Aulosira were found in neutral and alkaline soils. Molecular characterization using 16S rRNA PCR and DGGE revealed the presence of 13 different phylotypes of cyanobacteria in these samples. Butachlor treatment of the soil samples led to the disappearance of 5 and the emergence of 2 additional phylotypes. A total of 40 DGGE bands showed significant reproducible changes upon treatment with butachlor. Phylogenetic analyses divided the phylotypes into five major clusters exhibiting interesting links with soil pH. Aulosira, Anabaena, Trichormus, and Anabaenopsis were sensitive to butachlor treatment, whereas uncultured cyanobacteria, a chroococcalean member, Westillopsis, Nostoc, Calothrix, Tolypothrix, Rivularia, Gloeotrichia, Fischerella, Leptolyngbya, and Cylindrospermum, appeared to be tolerant against butachlor at their native soil pH. Butachlor-induced inhibition of nitrogen fixation was found to be 65% (maximum) and 33% (minimum) in the soil samples of pH 9.23 and 5.20, respectively. In conclusion, low butachlor doses may prove beneficial in paddy fields having a neutral to alkaline soil pH.

Soil-to-Plant Transfer Coefficients of Mn-54, Co-6O, Zn-65 and Cs-137 for Rice, Soybean and Vegetalbles (벼, 콩 및 채소류에 대한 Mn-54, Co-60, Zn-65, Cs-137의 토양-작물체간 전이계수)

  • Choi, Yong-Ho;Kim, Kug-Chan;Lee, Chang-Woo;Lee, Kang-Suk;Lee, Jeong-Ho;Pak, Chan-Kirl;Cho, Yong-Woo
    • Journal of Radiation Protection and Research
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    • v.16 no.2
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    • pp.55-65
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    • 1991
  • Soil-to-plant transfer coefficients of Mn-54, Co-60, Zn-65, and Cs-137 were estimated for the edible parts of the rice, soybean, lettuce, carrot, and squash grown in different soils by radiotracer uptake experiments using pot cultures. The transfer coefficients of radionuclides were in the order of Zn-65 > Mn-54 > Cs-137 > Co-60 in most of the cases studied. The coefficients for soybean were roughly an order of magnitude higher than those for rice. Among vegetables, lettuce mostly showed the highest value and squash, the lowest. In the strongly acidic soils, transfer coefficients were much higher than in the moderately acidic soils. From the data obtained. crop-specific transfer coefficients of the four nuclides were proposed for the use in Korean food-chain radiation dose assessment.

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Geochemical Behavior of Metals in the Contaminated Paddy Soils around Siheung and Deokeum Mines through Laboratory Microcosm Experiments (실내 microcosm실험에 의한 시흥광산 및 덕음광산 주변 오염 논토양내 중금속의 지구화학적 거동 연구)

  • 김정현;문희수;안주성;김재곤;송윤구
    • Economic and Environmental Geology
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    • v.35 no.6
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    • pp.553-565
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    • 2002
  • Seasonal variations in vertical distributions of metals were investigated in the contaminated paddy soils around Siheung Cu-Pb-Zn and Deokeum Au-Ag mines. Geochemical behavior of metals was also evaluated with respect to redox changes during the cultivation of rice. Two microcosms simulating the rice-growing paddy field were set up in the laboratory. The raw paddy soils from two sites showed differences in mineralogy, metal concentrations and gecochemical parameters, and it is suggested that high proportions of exchangeable fractions in metals may give high dissolution rates at Deokeum. In both microcosms of Siheung and Deokeum, redox differences between surface and subsurface of paddy soils were maintained during the flooded period of 18 weeks. Siheung soil had neutral to alkaline pH conditions, while strongly acidic conditions and high Eh values were found at the surface soil of Deokeum. The concentrations of dissolved Fe and Mn were higher in the subsurface pore waters than in interface and upper waters from both microcosms, indicating reductive dissolution under reducing conditions. On the contrary, dissolved Pb and Zn had high concentrations at the surface under oxidizing conditions. From the Siheung microcosm, release of dissolved metals into upper waters was decreased. presumably by the trap effect of Fe- and Mn-rich layers at the interface. However, in the Deokeum microcosm, significant amounts of Pb and Zn were released into upper water despite the relatively lower contents in raw paddy soil, and seasonal variations in the chemical fractionation of metals were observed between flooded and drained conditions. Under acidic conditions, rice may uptake high amounts of metals from the surface of paddy soils during the flooded periods, and increases of exchangeable phases may also increase the bioavailability of heavy metals in the drained conditions.

Evaluation of Sequential Extraction Techniques for Selected Heavy Metal Speciation in Contaminated Soils

  • Lee, Jin-Ho;Doolittle, James J.;Oh, Byung-Taek
    • Korean Journal of Environmental Agriculture
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    • v.25 no.3
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    • pp.236-246
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    • 2006
  • In this study, we give insight into questionable results that can be encountered in the conventional sequential extraction of heavy metals (Cd, Cu, and Zn) from soils. Objectives of this study were to determine the extraction variability of exchangeable (EXC)-metals as using six different EXC-extractants commonly accepted, and to investigate selectivity problems with carbonates bound (CAB)-metal fraction, a buffered acetate (1.0 M NaOAc; pH 5.0) extractable-metal fraction, leading to erratic results in especially non-calcareous soils. The contents of EXC-metals were markedly varied with the different extractability of various EXC-metal extractants used. The contents of EXC-Cd fraction were ranged from 2.0 to 74.3% of total Cd content in all of the metal spiked soils studied. The contents of EXC-Zn fraction extracted with the different EXC-extractants were varied with soil types, which were from 0.4 to 3.9% of total Zn in the calcareous soils, from 7.6 to 17.9% in the acidic soil, and from 13.6 to 56.8% in the peat soil. However, the contents of EXC-Cu fraction were relatively similar among the applications of different EXC-meal extractants, 0.2 to 2.1 % of total Cu, in all soils tested. Also, these varied amounts of EXC-metal fractions, especially Cd and Zn, seriously impacted the contents of subsequent metal fractions in the procedure. Furthermore, the CAB-Cd, -Cu, and -Zn fractions extracted by the buffered acetate solution were in critical problem. That is, the buffered acetate solution dissolved not only CAB-metals but also metals that bound or occupied to subsequent fractions, especially OXD-metal fraction, in both calcareous and non-calcareous soils. The erratic results of CAB-fraction also seriously impacted the amounts of subsequent metal fractions. Therefore, the conventional sequential extraction should be reconsidered theoretically and experimentally to quantify the target metal fractions or might be progressively discarded.

A Study on the Amino Acid Components Soil Humus Composition (토양부식산(土壤腐植酸)의 형태별(形態別) Amino 산(酸) 함량(含量)에 관(關)한 연구(硏究))

  • Kim, Jeong-Je;Lee, Wi-Young
    • Korean Journal of Soil Science and Fertilizer
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    • v.21 no.3
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    • pp.254-263
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    • 1988
  • Contents and distribution of amino acids in the humic acid and fulvic acid fractions of different types ($R_p$, B, A, P) were investigated. Extracted humic and fulvic acids were purified and analyzed. The results are summarized as the following: (1) Composition of Humus The total humus ($H_T$), amount of humic acid (a), amount of fulvic acid (b), and ${\Delta}logK$ all decrease in the order of $R_p$ > B > A > P type. The same trend was observed in the total nitrogen and carbon. (2) Contents and composition of amino acids in humic acids. 1) The total amounts of amino acids in the humic acid fraction of different types were in the following order for soils under coniferous forest trees: $R_p$ > B > A > P type, but for soils under deciduous forest trees the order was P > A > $R_p$ > B type. There were positive correlationships between total amino acids and total carbon and ${\Delta}logK$ for humic acids from soils under coniferous forest trees, but a negative correlationship was existed. between total amino acids and C/N ratios. No significant correlation was found for samples taken from soils under deciduous forest trees. 2) The ratios of one group of amino acids to the others were compared. The ratios of acidic amino acids were in the order of P > $R_p$ > B > A type. those of neutral amino acids followed the order of $R_p$ > B > A > P type and those of the basic amino acids were in the order of B > A >$R_p$ > P type for soils under coniferous forest trees. Contents of total amino acids were in the order of the neutral > the acidic > the basic amino acids. For the soils under deciduous forest trees the order of the ratio was different. Acidic amino acids followed the order of A > P > B > $R_p$ type, neutral ones followed the order of P > $R_p$ > A > B type, and the basic amino acids did the order of $$P{\geq_-}$$ A > B $$\geq_-$$ $-R_p$ type where the difference was very small. 3) In general aspartic aicd, glycine and glutamic acid were the major components in all samples. Histidine, tyrosine and methionine belonged to the group contained in a small amount. (3) Contents and composition of amino acids in fulvic acids. 1) The total amounts of amino acids of different types of fulvic acids were in the order of $R_p$ > B > P > A type regardless of origin of samples. There were positive correlationships observed between the toal amino acids and total carbon and ${\Delta}logK$ for soils under coniferous forest trees. For soils under deciduous forest trees, positive correlationships were observed among total amino aicds, total nitrogen, total humus ($H_T$), total humic aicd (a), and ${\Delta}logK$, but a negative correlationship existed between total amino acids and C/N ratio. 2) Thr ratio among acidic amino acids, neutral amino acids and basic amino acids of different types were $R_p$ > B > P > A type. In this respect there was no difference between the two soils. 3) In general glycine, aspartic acid, and alanine were the major constituents in all samples of different types, while tyrosine and methionine were contained in a small amount. Virtually no amount of arginine was measured.

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