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Molecular phylogeny of Indonesian Lymantria Tussock Moths (Lepidoptera: Erebidae) based on CO I gene sequences

  • Sutrisno, Hari
    • Journal of Species Research
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    • v.3 no.1
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    • pp.7-16
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    • 2014
  • Many species of Lymantria are important forestry pests, including L. dispar which is well known distributed from Asia to North America as an invasive species. Like of most other genera of moths, the systematic of this genus is still in dispute, especially on the monophyly and the relationship within this genus due to the fact that genus is very large and varied. This genus was morphologically defined only by a single aphomorphy. To clarify the monophyly of the genus Lymantria, to reveal the phylogenetic relationship among the Indonesian species, and to establish the genetic characters of Indonesian Lymantria, we analyzed 9 species of Indonesian Lymantria involving 33 other species distributed around the world based on nucleotide sequence variation across a 516-bp region in the CO I gene. The results showed that the base composition of this region was a high A+T biased (C: 0.3333). The results also showed that the monophyly of Lymantria was not supported by bootstrap tests at any tree building methods. Indonesian species was distributed into four different groups but the relationship among them was still in dispute. It indicates that relationships among the basal nodes (groups) proposed here were least valid due to the fact that the number of species may not be enough to represent the real number of species in the nature. Moreover CO I gene sequences alone were not able to resolve their relationships at the basal nodes. More investigations were needed by including more species and other genes that the more conserved.

Four new species of the genus Pholcus Walckenaer (Araneae, Pholcidae) from Korea

  • Lee, Jun-Gi;Lee, Jun-Ho;Choi, Doo-Young;Park, Sun-Jae;Kim, A-Young;Kim, Sam-Kyu
    • Journal of Species Research
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    • v.10 no.1
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    • pp.86-98
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    • 2021
  • The genus Pholcus Walckenaer, 1805 is the largest genus among the cellar spider family Pholcidae C.L. Koch, 1850, including 339 species. To date, 33 species in the genus are known to be distributed in Korea, being placed into three species-groups(crypticolens-group, phalangioides-group, and phungiformes-group). About 91% of these species are endemic to Korea. In this study, four new species of the genus Pholcus were discovered in Korea, viz, Pholcus chuncheonensis Lee, Choi and Kim sp. nov., Pholcus pajuensis Lee, Choi and Kim sp. nov., Pholcus pocheonensis Lee, Choi and Kim sp. nov., and Pholcus unaksanensis Lee, Choi and Kim sp. nov. These new species are classified as members of the phungiformes-group, having morphological characteristics such as male chelicerae with a frontal apophysis, palpal tibia with a prolateroventral tubercle, and genital bulb without appendix or having pseudo-appendix, but can be distinguished from congeners by characteristics of the male palp and female genitalia. Detailed descriptions and a key to new species are provided with accompanying photographs.

Genomic Insights into Paucibacter aquatile DH15, a Cyanobactericidal Bacterium, and Comparative Genomics of the Genus Paucibacter

  • Ve Van Le;So-Ra Ko;Hee-Mock Oh;Chi-Yong Ahn
    • Journal of Microbiology and Biotechnology
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    • v.33 no.12
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    • pp.1615-1624
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    • 2023
  • Microcystis blooms threaten ecosystem function and cause substantial economic losses. Microorganismbased methods, mainly using cyanobactericidal bacteria, are considered one of the most ecologically sound methods to control Microcystis blooms. This study focused on gaining genomic insights into Paucibacter aquatile DH15 that exhibited excellent cyanobactericidal effects against Microcystis. Additionally, a pan-genome analysis of the genus Paucibacter was conducted to enhance our understanding of the ecophysiological significance of this genus. Based on phylogenomic analyses, strain DH15 was classified as a member of the species Paucibacter aquatile. The genome analysis supported that strain DH15 can effectively destroy Microcystis, possibly due to the specific genes involved in the flagellar synthesis, cell wall degradation, and the production of cyanobactericidal compounds. The pan-genome analysis revealed the diversity and adaptability of the genus Paucibacter, highlighting its potential to absorb external genetic elements. Paucibacter species were anticipated to play a vital role in the ecosystem by potentially providing essential nutrients, such as vitamins B7, B12, and heme, to auxotrophic microbial groups. Overall, our findings contribute to understanding the molecular mechanisms underlying the action of cyanobactericidal bacteria against Microcystis and shed light on the ecological significance of the genus Paucibacter.

Taxonomic Study on Volvariella in Korea

  • Seok, Soon-Ja;Kim, Yang-Sup;Won, Hang-Yeon;Lee, Kang-Hyo;Park, Ki-Moon;Min, Kyong-Hee;Yoo, Kwan-Hee
    • Mycobiology
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    • v.30 no.4
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    • pp.183-192
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    • 2002
  • Diversities of Korean species belonging to the genus Volvariella have been studied through forty five dried specimens collected throughout the Korean peninsula for 28 years, from 1972 to 2000, and preserved in NIAST's herbarium. We have found one unrecorded species of the genus Volvariella in Korea: V. villosavolva(Lloyd) Sing, Stirp Taylori Korean common names were designated. Ten species of the genus Volvariella including the recorded Korean species of Volvariella have been identified and the keys to the species were constructed.

An undescribed genus of skate (Pisces, Elasmobranchii, Rajoidei) from Korea

  • ;Tetsuji NAKABO
    • Proceedings of the Zoological Society Korea Conference
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    • 1998.04a
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    • pp.33-33
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    • 1998
  • The most recent, Jeong and Nakabo (1997) described Raja koreana as a new species based on an adult female specimen collected from the southwestern coast of Korean Peninsula. Raja koreana has several unique characters not shared with any other supraspecific taxa of Rajoidei, but it was provisionally included in the genus Raja because of having no information of its clasper. Later, two mature males and a few specimens of the species were collected from near the type locality. Therefore, a new genus should be erected for this species. The new genus is characterized by the followings: Rostral shaft straight, narrow and thick in depth: unsegmented base with filamentous cartilage. Dorsal surface of tail with a row of distinct thorns along midline, patches of distinct thorns anterior to first dorsal fin and between first and second dorsal fins in bathe sexes; most thorns directed anteriorly, and thornlets directed posteriorly. Scapulocoracoid comparatively short and high, rear corner high, without anterior bridge, postventral fenestra expanded. Distal tip of accessory terminal 1 claspser cartilage well separated from the tip of accessory terminal 2 clasper cartilage.

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Taxonomic Study on the Lichen Genus Xanthoparmelia (Ascomycotina, Parmeliaceae) in Korea

  • Wang, Xin Yu;Koh, Young-Jin;Hur, Jae-Seoun
    • Mycobiology
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    • v.36 no.4
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    • pp.203-210
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    • 2008
  • In previous studies investigating the genus Xanthoparmelia, thirteen different species have been reported from South Korea alone. However, there currently has been no revisional study performed until now. To explore the genus Xanthoparmelia, a phenotypic analysis was performed based on morphological, anatomical and chemical characters, while an investigation of Xanthoparmelia phylogeny was based on nuclear ribosomal (nr) DNA ITS sequences. A thorough examination of the specimens deposited in the Korean Lichen Research Institute (KoLRI) confirmed that eight species of Xanthoparmelia occur inside South Korea. Our analysis further confirmed the colors of the lower surface and medullar chemistry are important taxonomic characters in Xanthoparmelia. This study also presents a detailed description of each species and a key to the genus.

Giardella ricoensis n. sp. from the West Indies and the Proposal of the New Genus Goodingius (Copepoda: Cyclopoida: Clausidiidae)

  • Kim, Il-Hoi
    • Animal Systematics, Evolution and Diversity
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    • v.23 no.2
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    • pp.127-133
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    • 2007
  • A new genus Goodingius is proposed to incorporate Hemicyclops adhaerens(Williams), H. arenicolae Gooding, H. elongatus Wilson and H. subadhaerens Gooding, all of which bear the six-segmented female urosome, three mandibular elements (or three elements plus one rudimentary setule), five setae on the first antennular segment, and no inner coxal seta of leg 4. The genus Giardella Canu, a sister taxon of Goodingius, is redefined as possessing eight elements on the third exopodal segment of leg 3, only a single inner seta on the second endopodal segment of leg 4, four spines on the third endopodal segment of leg 4. To the genus Giardella, Hemicyclops caissarum Kihara and Rocha and H. carinifer Humes are assigned, in addition to Giardella ricoensis n. sp., Giardella callianassae Canu, and G. thompsoni A. Scott. Keys to the species of both genera are provided.

Taxonomy on Freshwater Canthocamptid Harpacticoids (Copepoda) from South Korea - 1. Genus Canthocamptus (한국 담수산 딱정장수노벌레과 갈고리노벌레류의 분류 - 1. 딱정장수노벌레( Canthocamptus)속)

  • Cheon Young Chang;Ji Min Lee
    • Animal Systematics, Evolution and Diversity
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    • v.19 no.1
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    • pp.149-159
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    • 2003
  • A taxonomic study on the freshwater harpacticoids of the genus Canthocamptus has been accomplished as one of the serial researches on the family Canthocarnptidae in South Korea. As a result of it, a total of seven species of the genus are listed, two of which are new to Korean fauna: C. kitaurensis Kikuchi and C. macrosetifer Ishida. Additional materials of five species belonging to Canthocamptus mirabilis species group are recorded. A key to the seven species of the genus Canthocamptus known from Korea is prepared.

A Brief Chronicle of the Genus Cordyceps Fr., the Oldest Valid Genus in Cordycipitaceae (Hypocreales, Ascomycota)

  • Shrestha, Bhushan;Tanaka, Eiji;Han, Jae-Gu;Oh, Junsang;Han, Sang-Kuk;Lee, Kang-Hyo;Sung, Gi-Ho
    • Mycobiology
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    • v.42 no.2
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    • pp.93-99
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    • 2014
  • The earliest pre-Linnaean fungal genera are briefly discussed here with special emphasis on the nomenclatural connection with the genus Cordyceps Fr. Since its valid publication under the basidiomycetous genus Clavaria Vaill. ex L. (Clavaria militaris L. Sp. Pl. 2:1182, 1753), the genus Cordyceps has undergone nomenclatural changes in the post-Linnaean era, but has stood firmly for approximately 200 years. Synonyms of Cordyceps were collected from different literature sources and analyzed based on the species they represent. True synonyms of Cordyceps Fr. were defined as genera that represented species of Cordyceps Fr. emend. G. H. Sung, J. M. Sung, Hywel-Jones & Spatafora. The most common synonyms of Cordyceps observed were Clavaria and Sphaeria Hall, reported in the 18th and in the first half of the 19th century, respectively. Cordyceps, the oldest genus in the Cordyceps s. s. clade of Cordycipitaceae, is the most preferred name under the "One Fungus = One Name" principle on priority bases.

A Study on the Herbal Name and Four Qi(四性) of Genus Curcuma in the Korea Pharmacopoeia Ninth Edition ($\ll$대한약전$\gg$ 제9개정에서 Curcuma속(屬)의 한약명과 약성에 관한 연구)

  • Kim, In-Rak
    • The Korea Journal of Herbology
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    • v.24 no.3
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    • pp.21-28
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    • 2009
  • Objectives : The purpose of this study is to determine the herbal name and four Qi(四性) of genus curcuma in the Korea Pharmacopoeia ninth Edition. Methods : Compare with the name and four qi of genus curcuma from the Korea Pharmacopoeia ninth Edition and the other nation's Pharmacopoeia and main herbal medicine books. Results : 1. The Rhizoma of Curcuma longa is called Kanghwang in KP 9, but is called Ulgeum in the main herbal medicine book. 2. The Rhizoma of genus curcuma except Curcuma longa is called Achul in KP 9, but is called Kanghwang in the main herbal medicine book. 3. The root of genus curcuma is called Ulgeum in KP 9, but is called Achul in the main herbal medicine book. 4. The four qi of the Rhizoma and Radix of genus curcuma is recorded worm and cold in the Ch. p 2005, but is recorded cold and worm in the main herbal medicine book. Conclusions : Kanghwang, Achul, Ulgeum in the KP 9 is equivalent Ulgeum, Kanghwang, Achul in the main herbal medicine book. The four qi of Rhizoma is cold, Radix is warm.