• Journal of Oral Medicine and Pain
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• 제21권2호
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• pp.317-329
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• 1996

Allelic frequency and genotype distribution of short tandem repeat(STR) F13A01 locus was analysed by polymerase chain reaction, polyacrylamide gel electrophoresis and silver staining from human genomic deoxyribonucleic acid(DNA) was extracted from 205 unrelated Korean to be applied to forensic identification and parentage testing as a database. The results were as follows : 1. 5 alleles and 11 genotypes of F13A01 locus were detected and heterozygosity value was 62.0% and the observed each alleles and allelic frequency was 3.2(0.363), 4(0.105), 5(0.063), 6(0.466), 16(0.002). 2. The allelic diversity value was 0.639 and the power of discrimination was 0.804.3. Compared with observed number of alleles and allele frequency in ethnic difference, result was appeared to be similar to that of Japanese and Asians, while was appeared to be much different to that of Blacks and Caucasians in the observed number of alleles and frequency of allele 3.2, 5, 7. From the above result of this investigation, the allelic frequency of STR F13A01 locus in the Korean was considerd to be useful for individual identification and parentage testing as a database.

• Animal cells and systems
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• 제1권1호
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• pp.129-134
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• 1997

HLA-A2 is one of the most diversified HLA-class I antigen with 17 subtypes so far identified at the molecular level. HLA-A*02 subtyping has significant implications on the tissue typing for organ and bone marrow transplantations. Recently, DNA-based typing methods have been successfully applied to the elucidation of HLA gene polymorphisms. In the present study, HLA-A*O2 genotyping was established by using nested polymerase chain reaction-sequence specific primers (PCR-SSP) and distribution of A*O2 alleles were determined in Korean individuals. Genomic DNA prepared from four B-lymphoblastoid cell lines and lymphocytes from serologically defined 48 HLA-A2 Korean individuals by phenol/chloroform extractions was typed. The results of the four B-lymphoblastoid cells were consistent with the previous data typed by PCR analysis. Five A*O2 alleles-A*0201, A*0203, A*0206, A*0207 and A*0210-were commonly observed in a total of 17 A*02 alleles. Of these, A*0207 (f=49.0%) was the most frequent allele in Korean population. A*0206 (f=28.3%) and A*0201 (f=17.0%) were also found frequently while A*0203 and A*0210 types were observed in less than 5%. In conclusion, the high level of discrimination for HLA-A*O2 alleles will prove useful and informative in the study of transplant survival, and may identify the importance of allelic differences not readily detectable by serology on host and donor compatibility.

• Asian-Australasian Journal of Animal Sciences
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• 제32권2호
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• pp.176-182
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• 2019

Objective: This study was conducted to investigate basic information on genetic structure and characteristics of Limousin population in Hungary. Obtained results will be taken into consideration when adopting the new breeding strategy by the Association of Hungarian Limousin and Blonde d'Aquitaine Breeders (AHLBB). Methods: Genetic diversity and phylogenetic relationship of 3,443 Limousin cattle from 16 different herds were investigated by performing genotyping using 18 microsatellite markers. Amplified DNA was genotyped using an automated genetic analyzer. Results: Mean of effective alleles ($n_e$) of the populations was 3.77. Population C had the lowest number of effective alleles (3.01) and the lowest inbreeding coefficient ($F_{IS}$) value (-0.15). Principal component analysis of estimated genetic distance ($F_{ST}$) values (p<0.000) revealed two herds (C and E) distinct from the majority of other Limousin herds. The pairwise $F_{ST}$ values of population C compared to the others (0.066 to 0.120) fell into the range of moderate genetic distance: 0.050 to 0.150, while population E displayed also moderate genetic distance ($F_{ST}$ values in range 0.052 to 0.064) but only to six populations (G, H, J, L, N, and P). $F_{ST(C-E)}$ was 0.148, all other pairs -excluding C and E herds- displayed low genetic distance ($F_{ST}$<0.049). Population D, F, I, J, K, L, N, O, and P carried private alleles, which alleles belonged to 1.1% of the individuals. Most probable number of clusters (K) were 2 and 7 determined by Structure and BAPS software. Conclusion: This study showed useful genetic diversity and phylogenetic relationship data that can be utilized for the development of a new breeding strategy by AHLBB. The results presented could also contribute to the proper selection of animals for further whole genome scan studies of Limousins.

• Korean Journal of Mathematics
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• 제31권1호
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• pp.17-23
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• 2023

For a locus with two alleles (I^A and I^B), the frequencies of the alleles are represented by $$p=f(I^A)={\frac{2N_{AA}+N_{AB}}{2N}},\;q=f(I^B)={\frac{2N_{BB}+N_{AB}}{2N}}$$ where N_AA, N_AB and N_BB are the numbers of I^AI^A, I^AI^B and I^BI^B respectively and N is the total number of populations. The frequencies of the genotypes expected are calculated by using p², 2pq and q². Choi defined the density and operator for the value of the frequency of one gene and found the adapted partial differential equation as a follow-up for the frequency of alleles and applied this adapted partial differential equation to several diploid model [1]. In this paper, we find adapted equations for the model for selection against recessive homozygotes and in case that the alley frequency changes after one generation of selection when there is no dominance. Also we consider the triploid model with three alleles I^A, I^B and i and determine whether six genotypes observed are in Hardy-Weinburg for equilibrium.

• 농업과학연구
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• 제25권1호
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• pp.68-78
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• 1998

한우집단의 혈액단백질 및 효소의 유전적 다형과 유전적 구성을 조사하기 위하여 축협중앙회에서 사육중인 한우집단에 대한 transferrin(Tf), post-transferrin-2(pTf-2), albumin(Alb), post-albumin(pAlb), ceruloplasmin(Cp), amylase-I(Am-I) 및 hemoglobin(Hb)의 유전적 변이체를 PAGE(polyacrylamide gel electrophoresis와 STAGE(starch gel electrophoresis) 방법으로 분석하였다. 혈청단백질의 유전적 변이체에 있어서 Tf유전자좌는 Tf A, $D_1$, $D_2$ 및 E 대립유전자의 지배를 받는 것으로 추정되었으며, 이들의 유전자빈도는 각각 0.249, 0.248, 0.260, 0.243이었다. pTf-2 유전자좌는 pTf-2 F와 S 대립유전자의 지배를 받는 것으로 확인되었으며, 이들의 유전자빈도는 각각 0.662 및 0.338이었고, pAlb 유전자좌는 pAlb F와 S 대립유전자의 지배를 받는 것으로 확인되었으며, 이들의 유전자빈도는 pAlb F와 S에서 각각 0.600 및 0.400이었다. 혈청효소의 유전적 변이체에 있어서 Cp유전자좌는 Cp F와 S, 그리고 Am-I유전자좌는 Am-IB와 C 대립유전자의 지배를 받는 것으로 확인되었으며, 이들의 유전자빈도는 Cp F와 S 에서 각각 0.319 및 0.681 이었고, Am-I B와 C에서 각각 0.318 및 0.682 이었다. Hb의 유전적 변이체에 있어서 Hb 유전자형 분포는 Hb AA, Ab 및 BB형에서 76.5, 21.2 및 2.3% 이었고, 유전자빈도는 Hb A 및 B에서 각각 0.871 및 0.129이었다. 산육형질에 대한 혈액단백질의 유전적 변이체의 효과에 있어서는 Tf $D_1D_1$, $D_2D_2$ 및 $D_2E$ 유전자형이 6개월 체중과 일당증체량에서 유의적으로 높았다.

• Proceedings of the National Institute of Ecology of the Republic of Korea
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• 제3권4호
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• pp.191-198
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• 2022

Natural habitats of the Korean long-tailed goral (Naemorhedus caudatus) have been fragmented by anthropogenic activities in South Korea in the last decades. Here, the individual identity, genetic variation, and population differentiation of the endangered species were examined via the multiple-tube approach using a non-invasive genotyping method. The average number of alleles was 3.16 alleles/locus for the total population. The Yanggu population (1.66) showed relatively lower average number of alleles than the Inje population (3.67). Of the total 19 alleles, only seven (36.8%) alleles were shared by the two populations. Using five polymorphic out of six loci, four and six different goral individuals from the captive Yanggu (n=24) and the wild Inje (n=28) population were identified, respectively. The allele distribution was not identical between the two populations (Fisher's exact test: P<0.01). A considerably low migration rate was detected between the two populations (no. of migrants after correction for size=0.294). Additionally, the F statistics results indicated significant population differentiation between them, however, quite low (F_ST=0.327, P<0.01). The posterior probabilities indicated that the two populations originated from a single panmictic population (P=0.959) and the assignment test results designated all individuals to both populations with nearly equal likelihood. These could be resulted from moderate population differentiation between the populations. No significant evidence supported recent population bottleneck in the total Korean goral population. This study could provide us with useful population genetic information for conservation and management of the endangered species.

• Korean Journal of Mathematics
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• 제30권1호
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• pp.67-72
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• 2022

For a locus with two alleles (I^A and I^B), the frequencies of the alleles are represented by $$p=f(I^A)={\frac{2N_{AA}+N_{AB}}{2N},\;q=f(I^B)={\frac{2N_{BB}+N_{AB}}{2N}$$ where N_AA, N_AB and N_BB are the numbers of I^AI^A, I^AI^B and I^BI^B respectively and N is the total number of populations. The frequencies of the genotypes expected are calculated by using p², 2pq and q². Choi showed the method of whether some genotypes is in these probabalities. Also he calculate the probability generating function for offspring number of genotype under a diploid model( [1]). In this paper, let x(t, p) be the probability that I^A become fixed in the population by time t-th generation, given that its initial frequency at time t = 0 is p. We find adapted equations for x using the mean change of frequence of alleles and fitness of genotype. Also we apply this adapted equations to several diploid model and it also will apply to actual examples.

• Asian-Australasian Journal of Animal Sciences
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• 제21권4호
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• pp.465-470
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• 2008

This study describes genetic variability in the BoLA-DRB3 gene in Iranian native cattle (Bos Indicus and Taurus) and relationships between these breeds. This is the first study of genetic polymorphism of the BoLA-DRB3 gene in Iranian native cattle. We examined exon 2 of the major histocompatibility complex (MHC) class II DRB3 gene from 203 individuals in four populations of Iranian native cattle (52 Sarabi, 52 Najdi, 49 Sistani, 50 Golpayegani cattle) using the hemi-nested PCR-RFLP method. We identified the 36 previously reported alleles and one novel pattern (*eac). Analysis of the frequencies of the various BoLA-DRB3.2 alleles in each breed indicated that DRB3.2*52 in Sarabi cattle (23%), DRB3.2 *14 and *24 alleles in Najdi cattle (13%), DRB3.2 *8 allele in Sistani cattle (22%) and DRB3.2*16 allele in Golpayegani cattle (14%), were the most frequent alleles. Allelic frequencies ranged from 1 to 23% among the 36 alleles and there were some alleles that were found only in Iranian cattle. Effective number of alleles in the four breeds was estimated to be 7.86, 11.68, 7.08 and 3.37 in Sarabi, Najdi, Sistani and Golpayegani, respectively. Observed heterozygosities were the highest in Sarabi (94%) and Najdi (94%). A population tree based on the frequency of BoLA-DRB3.2 alleles in each breed suggested that Najdi, Sarabi and Golpayegani cattle clustered together and Najdi and Sarabi were the closest breeds. Sistani cattle differed more from these three breeds. These new data suggest that allele frequencies differ between Iranian cattle breeds.

• 한국작물학회지
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• 제35권2호
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• pp.146-150
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• 1990

분벽성 옥수수에 대한 esterase 동위효소의 유전양상을 알아보고자 acrylamide gel 6.5%를 사용하여 분벽성인 IK 계통과 대조구로 무벽성인 A-type 계통을 교배하여 얻은 $F_1$ 및 $F_2$ 종자를 28$^{\circ}C$ 암조건하에서 발아시킨 유조직 중심주를 공시하여 전기영동한 결과는 다음과 같다. 1. 본 실험에 공시된 중심주조직은 음극효소를 포함하여 총 13개의 동위효소가 확인되었으며 이동거리에 따라 유전분이 양상이 5개군으로 구분되었다. 2. 원점으로부터 0.5cm에 존재하는 E$_{0.3}$, E$_{0.4}$, E$_{0.5}$ 동위효소는 2개의 대립인자에 의해 지배되었고, E$_{0.3}$+E$_{0.4}$ 변이체는 공우성 대립인자에 의해 지배되었다. 3. 밴드의 이동거리가 1.0cm에서 1.8cm에 존재하는 E$_{1.0}$ , E$_{1.2}$ , E$_{1.5}$ , E$_{1.8}$ 의 4개의 동위효소는 2개의 대립인자에 의해 지배되었고 존재하지 않는 비활성 밴드가 우성으로 작용하였다. 한편 변이체로 나타난 E$_{1.2}$ +E$_{1.5}$ 의 동위효소는 공우성 대립인자로 작용하였다. 4. 밴드의 이동거리가 2.8cm에서 3.5cm에 존재하는 E$_{2.8}$ , E$_{3.0}$ , E$_{3.5}$ 인 세 개의 밴드는 이들 중에서 두 개씩 나타나는 밴드가 세 개 모두 나타나는 개체수보다 현저히 많이 나타났다. ($\chi$$^2$=0.327$^{**}$ ). 5. 밴드의 이동거리가 3.8cm 이상에서 나타난 동위효소는 활성이 매우 낮았고 이들 효소는 모두가 두 개의 대립인자에 의해 지배되었다. 따라서 분벽성 옥수수 중심주 조직에 대한 esterase 동위효소는 멘델식 유전법칙에 의해 지배된다고 생각된다.각된다.각된다.

• Journal of Plant Biotechnology
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• 제47권2호
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• pp.118-123
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• 2020

The black seed coat of soybeans contain anthocyanins which promote health. However, mature soybean seeds contain anti-nutritional factors like lipoxygenase, lectin and Kunitz Trypsin Inhibitor (KTI) proteins. Furthermore, these seeds can be used only after the genetic elimination of these proteins. Therefore, the objective of this study was to develop novel soybean genotypes with black seed coat and triple recessive alleles (lx1lx1lx2lx2lx3lx3, titilele) for lipoxygenase, lectin, and KTI proteins. From a cross of parent1 (lx1lx2lx3/lx1lx2lx3, ti/ti, Le/Le) and parent2 (lx1lx2lx3/lx1lx2lx3, Ti/Ti, le/le), 132 F₂ seeds were obtained. A 3:1 segregation ratio was observed during F₂ seed generation for the inheritance of lectin and KTI proteins. Between a cross of the Le and Ti genes, the observed independent inheritance ratio in the F₂ seed generation was 9: 3 : 3 : 1 (69 Le_Ti_: 32 leleTi_: 22 Le_titi: 9 leletiti) (χ²=2.87, P=0.5 - 0.1). From nine F₂ seeds with triple recessive alleles (lx1lx1lx2lx2lx3lx3, titilele genotype), one novel strain posessing black seed coat, and free of lipoxygenase, lectin and KTI proteins, was selected. The seed coat color of the new strain was black and the cotyledon color of the mature seed was green. The weight of 100 seeds belonging to the new strain was 35.4 g. This black soybean strain with lx1lx1lx2lx2lx3lx3, titilele genotype is a novel strain free of lipoxygenase, lectin, and KTI proteins.