• Journal of Microbiology and Biotechnology
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• v.17 no.5
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• pp.705-711
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• 2007

Two novel strains of the Cytophaga-Flexibacter-Bacteroides(CFB) group, designated Gsoil $219^T$ and Gsoil $238^T$, were isolated from soil of a ginseng field of Pocheon Province in Korea. Both strains were Gram-negative, aerobic, nonmotile, nonspore-forming, and rod-shaped. Phylogenetic analysis based on 16S rRNA gene sequences indicated that both isolates belong to the genus Chitinophaga but were clearly separated from established species of this genus. The sequence similarities between strain Gsoil $219^T$ and type strains of the established species and between strain Gsoil $238^T$ and type strains of the established species ranged from 91.4 to 94.7% and 91.6 to 94.2%, respectively. Phenotypic and chemotaxonomic data(major menaquinone, MK-7; major fatty acids, $iso-C_{15:0}\;and\;C_{16:1}\omega5c$; major hydroxy fatty acid, $iso-C_{17:0}3-OH$; major polyamine, homospermidine) supported the affiliation of both strains Gsoil $219^T$ and Gsoil $238^T$ to the genus Chitinophaga. Furthermore, the results of physiological and biochemical tests allowed genotypic and phenotypic differentiation of both strains from the other validated Chitinophaga species. Therefore, the two isolates represent two novel species, for which the name Chitinophaga soli sp. nov.(type strain, Gsoil $219^T=KCTC\;12650^T=DSM\;18093^T$) and Chitinophaga terrae sp. nov.(type strain, Gsoil $238^T=KCTC\;12651^T=DSM\;18078^T$) are proposed.

• The Korean Journal of Ecology
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• v.16 no.1
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• pp.75-91
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• 1993

Structure and dynamics of Abies koreana community in Mt. Gaya were studied to provide the basic data for conservation of Abies koreana community, an endemic species in Korea. A. koreana community of this study site was composed of tree layer (4~7m), subtree layer (2~4m), shrub layer (1~2m), and herb layer (below 1m). The heights of tree and subtree layers were low. Floristic composition showed that this study site was subalpine and dry site. In frequency distribution diagram of diameter classes of major species consisting of A. koreana community, those of both A. koreana and other species showed reverse J-shaped types. From these results, it was estimated that A. koreana community of this site might be maintained continuously as a stable climax state like present state. In the spatal distribution diagram of major species, saplings of A. koreana were established under the canopy of A. koreana and Pinus koraiensis and under the dead tree of A. koreana. From these results, it was known that A. koreana saplings were recruited before the community was disturbed and regeneration was accomplished by advance regeneration pattern, in which these saplings established before occurrence of disturbance fill with open site originated from death of mature tree. Growth of annual rings was variable among individuals, it was estimated that such variation was originated in that growth of each individual relates to microclimatic conditions rather than macroclimatic ones. Ecological longevity of A. koreana in this study site estimated by disturbance types and age of dead trees was about 120 years.

• BMB Reports
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• v.37 no.4
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• pp.487-492
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• 2004

The extent of codon usage in the protein coding genes of the mycobacteriophage, Bxz1, and its plating bacteria, M. smegmatis, were determined, and it was observed that the codons ending with either G and / or C were predominant in both the organisms. Multivariate statistical analysis showed that in both organisms, the genes were separated along the first major explanatory axis according to their expression levels and their genomic GC content at the synonymous third positions of the codons. The second major explanatory axis differentiates the genes according to their genome type. A comparison of the relative synonymous codon usage between 20 highly- and 20 lowly expressed genes from Bxz1 identified 21 codons, which are statistically over represented in the former group of genes. Further analysis found that the Bxz1- specific tRNA species could recognize 13 out of the 21 over represented synonymous codons, which incorporated 13 amino acid residues preferentially into the highly expressed proteins of Bxz1. In contrast, seven amino acid residues were preferentially incorporated into the lowly expressed proteins by 10 other tRNA species of Bxz1. This analysis predicts for the first time that the Bxz1-specific tRNA species modulates the optimal expression of its proteins during development.

• Journal of Microbiology
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• v.45 no.1
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• pp.1-5
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• 2007

The bacterial compositions between the dental unit water system and human saliva were characterized and compared by direct sequence analysis of 16S rDNA clone libraries. Based on the species richness estimation, bacterial diversity in the dental unit water system (DUW) was more diverse than that of the human saliva (HS). The Chaol estimates of species richness in HS and DUW samples were 12.0 and 72.4, respectively. The total numbers of OTUs observed in the combined libraries accounted for 83% (HS) and 59% (DUW) of the Chaol diversity estimate as defined at the 80% similarity threshold. Based on the sequence analysis, the phylum Proteobacteria was the major group in both clone libraries at phylum level. DUW clone library contained 80.0% Proteobacteria, 8.0% Bacteroides, 4.0% Nitrospira, 4.0% Firmicutes, 2.0% Planctomycetes and 2.0% Acidobacteria. On the other hand, human saliva (HS) clone library contained 55.5% Proteobacteria, 36.1% Firmicutes and 8.4% Bacteroides. The majority of bacteria identified belonged to phylum Proteobacteria in both samples. In dental unit water system (DUW), Alphaproteobacteria was detected as the major group. There was no evidence of the bacterial contamination due to a dental treatment. Most sequences were related to microorganisms derived from biofilm in oligotrophic environments.

• Journal of Korean Society on Water Environment
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• v.39 no.4
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• pp.288-301
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• 2023

This study aims to identify benthic macroinvertebrate fauna inhabiting at the mountain valley stream (Mt. Cheonggye) in Korea and the relationship between physical environmental factors and biological indices. Benthic macroinvertebrates were collected at five locations on August 24 and October 14, 2020, and were identified as 4 phyla, 7 classes, 16 orders, 42 families, and 72 species. Dominance ranged from 0.38 to 0.59, diversity 2.81 to 3.75, richness 3.25 to 4.63, evenness 0.65 to 0.84, and %EPT (Ephemeroptera-PlecopteraTrichoptera) richness value 42% to 73%, respectively. All sites were evaluated as a very good status by mostly biological indices based on tolerance of indicator organisms in Korea. As a result of principal component analysis, biological indices are classified into species-level indices and higher cartegory-level indices according to the taxonomic level of the indicator organism considered in each index. As a result of canonical correspondence analysis, it was confirmed that current velocity was a major factor that increased species richness and classified biological indices according to taxonomic category level. Water depth was a major factor related to the community indices, and the deeper the water depth, the lower the diversity and the evenness.

• Journal of the Korean Institute of Landscape Architecture
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• v.23 no.3
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• pp.113-131
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• 1995

This study was conduced out to analyze the price trends of landscape woody plants during the past ten years. The method of this study was applied to secendary data analysis and the data were collected from "Government Specified Monthly Price Book" and "Monthly Price Book" The results of this study were as follows : 1. The annual average increasing rate of the GSP price was 3.9% while the KPRC price was 8.9% for the past ten years. The ratio of the KPRC price by GSP price was 94.7% in 1985 and it increased by 147.3% in 1994. This increase indicates a large price margin between two prices. The GSP price should be readjusted to a realistic level. 2. For the same period, the prices of native Korean tree were raised by 3.8% and 9.5% in annual average rate. Meanwhile, the exotic tree prices were raised by 3.6% for and 7.8% for in annual average rate. The prices of native Korean tree were raised more than those the exotic tree. 3. The annual average increasing rates of the twenty for species prices which were high ranked among all species prices were 12% for and 21.5% for . These top twenty species drove to markup trend of tree prices. 4. The annual average price increasing rate of major species which are used frequently for landscaping was higher than total increasing rate of all species. This result shows that the prices of the major species markup more than others. 5. From 1985 to 1994, the prices of 29 new species were listed on "The government specified monthly price book" and the prices of 40 species were newly listed on "Monthly price book". On the contrary, 3 species from "The government specified Monthly Book" and 10 species from "Monthly Price Book" were eliminated. The number of new listed on the native Korean species were twice as many as the exotic species. In addition, there is a need to study and explain reaon of the elimination.

• Journal of Korean Society for Atmospheric Environment
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• v.15 no.4
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• pp.393-402
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• 1999

Precipitation samples were collected by the wet-only sampling method in Iksan in the northwest of Chonbuk from March 1995 to February 1997. These samples were analyzed for the concentration of ion components, in addition to pH and electrical conductivity. The annual mean pH of precipitation was 4.8 and the seasonal trend of pH was shown to be low in Fall and Winter(4.5), middle-ranged in Spring(4.7) and high in Summer(5.0). The frequency of pH below 5.6 was about 71%. The seasonal pattern of pH frequency was found to be different in each season. In the case of the pH less than 5.0, the frequency was higher in Spring, Fall and Winter than in Summer, especially higher in Fall than in other seasons. The concentrations of analysed ions showed a pronounced seasonal pattern. However, major ion species for all seasons were $NH^+_4,;Ca^{2+};and;Na^+$ among cations and $SO^{2-}_4,;Cl^-;and;NO^-_3$ among anions. The major acidifying species appeared to be $nss-SO^{2-}_4;and;NO^-_3$, and the main bases responsible for the neutralization of precipitation acidity were $nss-Ca^{2+};and;NH^+_4$. The potential acidity of precipitation, pAi, was found to be between 3.0 and 5.0 for total samples, while the measured pH was approximately between 3.9 and 7.8. The seasonal trend of pAi showed a decreasing order: Summer (4.3), Winter(4.0), Spring and Fall(3.8). During the Fall, both pAi and pH were especially very low, which indicated that during this period the potential acidity of precipitation was high but the neutralizing capacity was low. For Spring, pAi was very low but pH was slightly high. This was likely due to the large amount of $CaCO_3$ in the soil particles transported over a long range from the Chinese continent that were incorporated into the precipitation, and then neutralized the acidifying species with its high concentraton.

• ALGAE
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• v.27 no.4
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• pp.249-258
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• 2012

Nongeniculate coralline red algae are a common element of the Brazilian coastal zone, especially associated to coral reefs. During the course of ecological studies at Parque Municipal Marinho do Recife de Fora, two species of non-geniculate Corallinales were the major organisms covering the reef. Analyses of the vegetative and reproductive features of the species were analyzed; indicating that one new species of the genus Lithothamnion is proposed here based on the combination of several features associated with anatomy of the tetrasporangial conceptacles in relation to other species of the genus for which modern accounts are available. This new proposal along with other new species, new combinations and range extension of some species of the genus based in similar features clearly suggest that stability in species delimitation is possible. The second species found Pneophyllum conicum represents a range extension of more than 6,000 km from the Pacific in to the Atlantic Ocean suggesting that some nongeniculate species are widely distributed. The occurrence and abundance of these species supports and emphasizes the need for an extensive taxonomic reassessment of coralline red algae in the context of Brazilian coral reef biodiversity.

• Journal of the korean society of oceanography
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• v.32 no.4
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• pp.202-207
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• 1997

Species composition and abundance of fish larvae were studied from May 1988 through August 1989 in the Han River Estuary and adjacent Kyunggi Bay, Korea. Of 23 taxa identified, Coilia nasus, llisha elongata, and Cyprinidae spp. were dominated. Maximum density (3,5771/1,000m)$^3$ occurred in August 1988 and minimum (3/1,m$^3$) in February 1989. O1igo- ormesohaline species dominated during ebb tides while polyhaline species during flood tides. Correspondence analysis revealed that three distinctive species groups; oligohaline species, Coilia nasus, Ilisha elongata and Cyprinidae spp., which dominated at both channels of Kwanghwa Island (stations 1, 2), mesohaline species, Sardinella zunasi and Gobiidae spp., at the mouth of Yeomha Channel (station 3), and polyhaline species, Engraulis japonicus and Syngnathus schlegeli, in the middle of Kyunggi Bay (station 4). Coilia nasus was the most abundant species and reported first time in the study area. Given the species composition and density of fish larvae, the Han River Estuary is considered to be a major spawning and nursery ground for brackish water species such as Coilia nasus, Ilisha elongata and some Cyprinidae spp.

• Korean Journal of Environment and Ecology
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• v.30 no.2
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• pp.139-145
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• 2016

To search for habitat characteristics of myrmecochory Melampyrum species, diaspores and related ant species, habitat characteristics, collecting fruits and diaspores of three Melampyrum species, cafeteria experiments, and the related ant species were studied from May 2012 to November 2014. The habitat of Melampyrum species was south-facing open forest edge with slightly acidic soil and relatively shallow soiil layers. Major plants coexisting with Melampyrum species were four woody species including Quercus mongolica and four herbaceous species including Carex siderosticta. These Plants might be host plants of the Melampyrum species. The shape of the diaspore was an oval seed attached to the white cap on one side. Significant differences is proved between three plant species in weight of diaspores, seeds and and elaiosome ratios. Mean values of diaspores weight showed 10.6mg, 8.0mg and 7.2mg in M. setaceum var. nakaianum, M. roseum var. ovalifolium and M. roseum, respectively. The heaviest elaiosome is M. roseum var. ovalifolium with 1.2mg, M. setaceum var. nakaianum has 1.0mg and the lightest elaiosome is M. roseum with 0.8mg. Major ant species frequently transporting the diaspores of Melampyrum species are Myrmicinae four species; Myrmica kotokui, M. excelsa, Myrmecina nipponica and Aphaenogaster japonica. Further studies on Melampyrum species, hemiparasite annual myrmecochorous plant, and related ant species should be needed.