• 제목/요약/키워드: 2R method

검색결과 8,569건 처리시간 0.045초

Genetic Differentiation of Pseudomonas syringae Pathovar tomato from Other P. syringae Pathovars using REP-PCR and URP-PCR

  • Cho, Min-Seok;Park, Dong-Suk;Yun, Yeo-Hong;Kim, Seong-Hwan;Shim, Myung-Yong;Choi, Chang-Won;Kim, Young-Shick
    • The Plant Pathology Journal
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    • 제28권1호
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    • pp.60-67
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    • 2012
  • For the genetic differentiation of $Pseudomonas$ $syringae$ pathovar $tomato$, a total of 51 $P.$ $syringae$ pv. strains infecting 33 different host plants were analyzed using repetitive element PCR(REP-PCR) and universal rice primer PCR(URP-PCR). The entire DNA fingerprint profiles were analyzed using unweighted pair-group method with arithmetic averages (UPGMA). The 51 $P.$ $syringae$ pv. strains could be divided into five clusters based on 65% similarity by Rep-PCR using BOX, ERIC, and REP primers. $P.$ $syringae$ pv. $tomato$ cluster was well separated from other 31 $P.$ $syringae$ pathovars. $P.$ $syringae$ pv. $tomato$ cluster included only $P.$ $syringae$ pv. $maculicola$ and $P.$ $syringae$ pv. $tomato$. $P.$ $syringae$ pv. $tomato$ strains could be divided into two genetic groups. Meanwhile, the Pseudomonas pv. strains could be divided into four clusters based on 63% similarity by URP-PCR using 2F, 9F, and 17R primers. $P.$ $syringae$ pv. $tomato$ cluster was also well separated from 30 other $P.$ $syringae$ pathovars. In this case, $P.$ $syringae$ pv. $tomato$ cluster included $P.$ $syringae$ pv. $maculicola$, $P.$ $syringae$ pv. $berberidi$, and $P.$ $syringae$ pv. $tomato$. $P.$ $syringae$ pv. $tomato$ strains was also separated into two genetic groups by URP-PCR analysis. Overall, our work revealed that $P.$ $syringae$ pv. $tomato$ can be genetically differentiated from other $P.$ $syringae$ pathovars by the DNA fingerprint profiles of REP-PCR and URP-PCR. We first report that there are two genetically diverged groups in $P.$ $syringae$ pv. $tomato$ strains.

면역세포의 cytokine 유리에 미치는 substance P의 영향 (Effects of Substance P on the Release of Cytokines from Immune Cell Lines)

  • 이진용;김수아;서석란;김형섭
    • Journal of Periodontal and Implant Science
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    • 제27권2호
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    • pp.425-441
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    • 1997
  • The neuropeptide substance P(SP) has been implicated in the mediation of inflammation and immune-mediated disease such as arthritis. Recently, it was reported that SP was markedly increased around the blood vessels in inflamed gingiva as well as in close association with the inflammatory cell infiltrate. These results support that SP may contribute to the pathophysiology of neuronal inflammation in human periodontal tissues. SP may regulate inflammatory/immune responses by stimulating the proliferation of human T cells, differentiation and antibody-secreting potential of B cells, macrophage respiratory burst, connective tissue proliferation, and the secretion of cytokines from monocytes and T cells. Here, I studied potential role of SP as a costimulatory chemical signal in inflammatory/immune responses, by determining the released proinflammatory cytokines such as $MIP-1{\alpha}$, $IL-1{\beta}$, and IL-6 from culture supernatants of homogeneous immune cell lines. Serum free cell supernatants were concentrated with TCA precipitation, fractionated with SDS-PAGE, and subjected into western blot analysis. Among 15 cell lines tested, macrophage/monocyte cell line RAW264.7 and WRl9m.1 showed the highest level of induction of $MIP-1{\alpha}$ when stimulated with LPS. Discrete IL-6 bands with multiple forms of molecular mass were detected from supernatants of B cell lines A20(32kDa), Daudi(32, 35kDa), and SKW6.4(29kDa), which were expressed constitutively. $IL-1{\beta}$ could not be detected by the method of western blot analysis from supernatants of all cell lines tested except RAW264.7, WRl9m.1, and erythroid cell line K562 which showed the least amount of $IL-{\beta}$ secretion. SP $10^{-9}M$ with suboptimal dose of LPS treatment showed synergistic induction of $MIP-1{\alpha}$ release from RAW264.7 or WR19m.1, and also IL-6 release from A20, but this synergism is not the case in costimulation of RAW264.7 or WRl9m.1 with SP $10^{-9}M$ and TPA. Although treatment of T cell line CTLL-R8 with SP $10^{-7}M$ or PHA+TPA induced modest level of $MIP-1{\alpha}$ secretion, synergism was not observed when they are applied together. These findings all together suggest the possibility of a regulatory role of SP in inflammatory/immune reaction through differential modulation of bioactivities of other chemical cosignals.

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기계설계분야 중견 엔지니어의 일과 학습에 관한 내러티브 연구 - 엔지니어의 직무관련 학습의 맥락과 공학교육에 대한 시사점 찾기 (A narrative research on the job and the job-related learning of a mechanical engineer - an exemplary study on the characteristic of job-related learning of engineer in work place and it's implication on engineering education)

  • 임세영
    • 대한공업교육학회지
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    • 제38권2호
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    • pp.1-26
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    • 2013
  • 이 연구는 기계설계 분야의 중견엔지니어 한 사람을 중심으로 그가 수행하는 구체적인 과업은 무엇이며 그와 관련하여 이루어지는 학습은 무엇인지, 일터에서 이루어지는 직무관련 학습의 맥락은 무엇인지 내러티브 연구방법에 의해 탐구하였으며, 이것이 공학교육에 주는 시사점을 논의하였다. 연구결과 연구참여자는 취업 후 수입대체를 위한 초창기 반도체 검사장비 개발을 위해 독립적으로 개발할 장비에 관한 기초지식을 습득하고 장비의 개념설계를 하였으며, 볼 타입 반도체 검사장비개발 동료들과 함께 장비의 구체설계를 하였고, 근무하던 회사의 폐업 후 잔류 엔지니어들과 함께 창업, 인터뷰 당시 이 기업의 경영자로 일하였다. 그가 엔지니어로서 수행한 주요 실무는 공학적 문제해결이었으며, 비형식적 학습의 과정이었다. 그는 실무수행 과정에서 프로젝트 관리, 자기주도적 과업수행, 기능분석, 추론과 검증, 긴밀한 협동, 대화와 토론, 시행착오, 암묵적 경험지식의 체계화, 총체적 사고, 환경변화의 지각과 기술수요 예측, 인간관계와 업무의 조화, 리더십 등을 경험하였다. 이를 바탕으로 공학교육이 프로젝트 학습, 자기주도적 학습, 대화와 토론 능력 교육을 위한 협동학습, 성찰학습, 실무적 경험을 이론화하는 학습, 인간관계와 리더십 교육 등을 강화해야 한다는 시사점을 얻었다.

Diversity of bacterial community during ensiling and subsequent exposure to air in whole-plant maize silage

  • Hu, Zongfu;Chang, Jie;Yu, Jianhua;Li, Shuguo;Niu, Huaxin
    • Asian-Australasian Journal of Animal Sciences
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    • 제31권9호
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    • pp.1464-1473
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    • 2018
  • Objective: To describe in-depth sequencing, the bacterial community diversity and its succession during ensiling of whole-plant maize and subsequent exposure to air. Methods: The microbial community dynamics of fermented whole-plant maize for 60 days (sampled on day 5, 10, 20, 40, 60) and subsequent aerobic exposure (sampled on day 63 after exposure to air for 3 days) were explored using Illumina Miseq sequence platform. Results: A total of 227,220 effective reads were obtained. At the genus level, there were 12 genera with relative abundance >1%, Lactobacillus, Klebsiella, Sporolactobacillus, Norank-c-cyanobacteria, Pantoea, Pediococcus, Rahnella, Sphingomonas, Serratia, Chryseobacterium, Sphingobacterium, and Lactococcus. Lactobacillus consistently dominated the bacterial communities with relative abundance from 49.56% to 64.17% during the ensiling process. Klebsiella was also an important succession bacterium with a decrease tendency from 15.20% to 6.41% during the ensiling process. The genus Sporolactobacillus appeared in late-ensiling stages with 7.70% abundance on day 40 and 5.32% on day 60. After aerobic exposure, the Lactobacillus decreased its abundance from 63.2% on day 60 to 45.03% on d 63, and Klebsiella from 5.51% to 5.64%, while Sporolactobacillus greatly increased its abundance to 28.15%. These bacterial genera belong to 5 phyla: Firmicutes (relative abundance: 56.38% to 78.43%) was dominant, others were Proteobacteria, Bacteroidetes, Cyanobacteria, and Actinobacteria. The bacterial communities clearly clustered into early-ensiling (d 5), medium-ensiling (d 10, d 20), late-ensiling (d 40, d 60), and aerobic exposure (d 63) clusters, with early- and late-ensiling communities more like each other than to the aerobic exposure communities. Conclusion: High-throughput sequencing based on 16S rRNA genes proved to be a useful method to explore bacterial communities of silage. The results indicated that the bacterial communities varied during fermentation and more dramatically during aerobic exposure. The study is valuable for understanding the mechanism of population change and the relationship between bacteria and ensilage characteristics.

Analysis of Mammographic Breast Density in a Group of Screening Chinese Women and Breast Cancer Patients

  • Liu, Jing;Liu, Pei-Fang;Li, Jun-Nan;Qing, Chun;Ji, Yu;Hao, Xi-Shan;Zhang, Xue-Ning
    • Asian Pacific Journal of Cancer Prevention
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    • 제15권15호
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    • pp.6411-6414
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    • 2014
  • Background: A dense breast not only reduces the sensitivity of mammography but also is a moderate independent risk factor for breast cancer. The percentage of Western women with fat breast tissue is higher aged 40 years or older. To a certain extent, mammography as a first choice of screening imaging method for Western women of this group is reasonable. Hitherto, the frequency and age distribution of mammographic breast density patterns among Chinese women had not been characterized. The purpose of this study was to investigate the frequency and age distribution of mammographic breast density patterns among a group of Chinese screening women and breast cancer patients in order to provide useful information for age-specific guidelines for breast cancer screening in Chinese women. Methods: A retrospective review of a total of 3,394 screening women between August and December 2009 and 2,527 breast cancer patients between July 2011 and June 2012 was conducted. Descriptive analyses were used to examine the association between age and breast density. The significance of differences of breast density between the screening women and the breast cancer patients was examined using nonparametric tests. Results: There was a significant inverse relationship between age and breast density overall (r=-0.37, p< 0.01). Breast density of the breast cancer patients in the subgroups of 40-49 years old was greater compared with that of the screening women, the same in those aged 50-54 years and in those 55 years old or older, less than in the screening group. Conclusions: With regard to the Chinese women younger than 55 years old, the diagnostic efficiency of breast cancer screening imaging examinations may be potentially improved by combining screening mammography with ultrasound.

Estimation of genetic parameters of the productive and reproductive traits in Ethiopian Holstein using multi-trait models

  • Ayalew, Wondossen;Aliy, Mohammed;Negussie, Enyew
    • Asian-Australasian Journal of Animal Sciences
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    • 제30권11호
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    • pp.1550-1556
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    • 2017
  • Objective: This study estimated the genetic parameters for productive and reproductive traits. Methods: The data included production and reproduction records of animals that have calved between 1979 and 2013. The genetic parameters were estimated using multivariate mixed models (DMU) package, fitting univariate and multivariate mixed models with average information restricted maximum likelihood algorithm. Results: The estimates of heritability for milk production traits from the first three lactation records were $0.03{\pm}0.03$ for lactation length (LL), $0.17{\pm}0.04$ for lactation milk yield (LMY), and $0.15{\pm}0.04$ for 305 days milk yield (305-d MY). For reproductive traits the heritability estimates were, $0.09{\pm}0.03$ for days open (DO), $0.11{\pm}0.04$ for calving interval (CI), and $0.47{\pm}0.06$ for age at first calving (AFC). The repeatability estimates for production traits were $0.12{\pm}0.02$, for LL, $0.39{\pm}0.02$ for LMY, and $0.25{\pm}0.02$ for 305-d MY. For reproductive traits the estimates of repeatability were $0.19{\pm}0.02$ for DO, and to $0.23{\pm}0.02$ for CI. The phenotypic correlations between production and reproduction traits ranged from $0.08{\pm}0.04$ for LL and AFC to $0.42{\pm}0.02$ for LL and DO. The genetic correlation among production traits were generally high (>0.7) and between reproductive traits the estimates ranged from $0.06{\pm}0.13$ for AFC and DO to $0.99{\pm}0.01$ between CI and DO. Genetic correlations of productive traits with reproductive traits were ranged from -0.02 to 0.99. Conclusion: The high heritability estimates observed for AFC indicated that reasonable genetic improvement for this trait might be possible through selection. The $h^2$ and r estimates for reproductive traits were slightly different from single versus multi-trait analyses of reproductive traits with production traits. As single-trait method is biased due to selection on milk yield, a multi-trait evaluation of fertility with milk yield is recommended.

우주에서 작물 생산을 위한 공학적 접근 (Engineering Approach to Crop Production in Space)

  • 김용현
    • 생물환경조절학회지
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    • 제14권3호
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    • pp.218-231
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    • 2005
  • 본고에서는 우주에서 장기간에 걸쳐 임무를 수행하는 인간의 생명지원을 목적으로 CELSS를 이용한 식물생산, 물과 공기의 정화 및 재생, 폐기물 처리 등을 위한 공학적 접근을 검토하였다. 이러한 공학적 접근에는 미소중력 또는 저압과 같은 우주 환경에 적용 가능한 폐쇄형 식물생산 시스템, 물질 순환, 물의 재생, 폐기물의 처리, 미량 유해가스의 제거, 조명, 배양액의 공급 등이 포함된다. 우주에서 재배 가능한 작물의 선택 기준으로 높은 생산성, 식용성, 소화성, 조리성, 자동화 가능성, 짧은 줄기, 높은 증산속도 등이 제기되고 있다. 화성 표면에서의 낮은 압력은 작물 생산용 온실을 설계할 때 주요 장애물에 해당한다. 때문에 저압하에서 식물 재배가 가능한 팽창식 온실의 개발에 관심이 집중되고 있다. 팽창식 온실의 구조, 내부 압력, 자재, 조명 방식, 방사선 차폐 등은 주요 설계 인자에 해당한다. 팽창식 온실 내의 낮은 압력은 구조물의 질량과 가스의 누출속도를 줄일 수 있다. 저압 조건에서는 증산속도가 급격하게 증가하여 식물의 수분요구도가 높게 나타난다. 증산 또는 수경재배시스템으로부터의 증발에 의해서 수분이 대기 중으로 방출될 때 증기압이 증가한다. 저압 조건에 있는 폐쇄계에서는 증기압의 변화가 전체 압력에 커다란 영향을 미친다. 그러므로 저압 조건의 수경재배시스템은 누수로 인하여 기화되는 수분 손실을 줄이기 위해서 고도로 밀폐되어야 한다. 또한 저압으로 유지되는 온실내의 상대습도를 높게 유지할 수 있는 환경제어 기술이 개발되어야 한다. 향후 폐쇄생태계 생명유지 시스템의 핵심 기술은 우주뿐만 아니라 지구상의 사막, 극지방 또는 해저와 같은 열악한 환경 조건에서도 생명 지원을 가능케 할 것이다.

체표온도특성(體表溫度特性)과 맥율(脈率)의 상관성(相關性) 연구(硏究) (A Study of Correlation between Pulse-Respiration Ratio and Characteristics of Thermal Temperature)

  • 이혁재;박영재;박영배;오환섭
    • 대한한의진단학회지
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    • 제12권1호
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    • pp.103-130
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    • 2008
  • Background: For standardizing of Han-Yeol [寒熱], which is a kind of diagnosis method in oriental medicine, it is necessary to investigate into relationship of symptoms and signs representative of Han-Yeol [寒熱] to the biofunctional medical signals; thermal temperature by Thermography, Pulse-Respiration Ratio and so on. By correlation analysis of these data items acquired from patients, it could be provides the fundamental data for standardizing of Han-Yeol [寒熱]. Objectives: We performed this study to check the characteristics of thermal temperature with Han-Yeol [寒熱] statue by pulse-respiration ratio. Methods: We selected nine regions around acupoints including Yin dang[印堂], Sugu[水溝, GV26], Ch'ondol[天突, CV22], Chonjung[CV17], Chung-wan[中脘, CV12], Chonchu[天樞 S25], No-gung[勞官, P8], and calculated based on the utility of R.O.I.(Region of Integer) by IR-2000 these points temperature from 68 subjects. In practicing pulse-respiration ratio over 4.0 means the statues of Yeol [熱], pulse-respiration ratio below 4.0 means the statues of Han [寒]. To optimum conditions thermal temperature, which are not effected by internal and external variables, we studied preceding research. The results shows that optimal time period is 20minutes after undressed and the optimal region is the region around acupoints including Sugu [水溝, GV26]. Based on a preceding research results, we analyzed these data by Paired T-test between GV26 Region and 8-Thermography Regions and two-way repeated ANOVA with thermography$({\Delta}T)$ and Han-Yeol [寒熱] statue by pulse-respiration ratio. Results: 1. In applying of two-way repeated ANOVA with thermography$({\Delta}T)$ and Han-Yeol [寒熱] statue by pulse-respiration ratio, Sugu [水溝穴, GV26] - [印堂穴, HN1], Sugu 水溝, GV26] - Chonjung[CV17], Sugu [水溝, GV26] -Chung-wan[中脘, CV12]had significant differences. 2. In applying of Paired T-test between Sugu [水溝穴, GV26] Region and 8- Thermography Regions, there were significant differences except of Sugu [水溝穴, GV26] -Chondolp[天突, CV22]. 3. In the difference of Sugu [水溝, GV26] -Chung-wan[中脘, CV12], thermal temperature increases a lot in the statues of Yeol [熱], thermal temperature decreases a lot in the statues of Han [寒]. Conclusions: On the analysis of Thermography, we obtain the measurement conditions were considered the individual variations. And it is different that the thermal temperature change on Thermography according to Han-Yeol [寒熱] statue by pulse-respiration ratio.

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정맥내 통증 자가조절법을 이용한 말기 암환자의 통증조절 (Intravenous PCA for Pain Management in Terminal Cancer Patients during the Last Days of Life)

  • 송선옥;여정은;김흥대;박대팔;구본업;이병용;허남석;이경숙
    • The Korean Journal of Pain
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    • 제9권1호
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    • pp.75-82
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    • 1996
  • Background: Nerve blocks, including epidural analgesia, can be risky for terminal cancer pain patients in generally poor conditions. We performed this study to evaluate the efficacy of intravenous patient-controlled analgesia(PCA) to treat severe pain of terminally ill cancer patients during the last days of life. Methods: We explained the patient's poor general condition to relatives and received a written consent to administer PCA. The starting dose of opioid for PCA in cancer pain management was based on previous 24-hour dose. Previous 24-hour opioid dose was converted to intramuscular morphine equivalent. The concentration of opioid mixed into Basal Bolus $Infusor^{(R)}$ was controlled to allow for one half of the previous 24-hour equianalgesic dose to infuse continuously. Patients controlled their pain by pushing the PCA module themselves. Patients were observed by pain service team. Some discharged patients were treated at home until death. Results: Forty eight patients received PCA for last two years. The most common reason receiving a PCA was the patient's poor general condition(52.0%). The mean starting dose of PCA was $20.6{\pm}16.2$ mg of morphine. Over eighty percents of the patients were in good or tolerable state of analgesia. Half of the patients expired within one week. The mean duration of PCA was $8.7{\pm}7.0$ days. The problems during PCA were: difficulty in maintaining intravenous routes, early loss of mentality after starting PCA, hypotension and nausea. Conclusion: We concluded that PCA, if correctly, is an effective, relatively safe and readily controllable method of pain management in terminally ill cancer patients during the last days of life. For future considerations, terminal patients may expire at the comfort of their own homes after the resolution of legal problems regarding using opioid in home care.

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집광채광 설비 입사부의 성능 평가방법에 관한 연구 (Study on the method to evaluate performance of Light Collector in Light-collecting System)

  • 윤용상;문선혜
    • 한국신재생에너지학회:학술대회논문집
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    • 한국신재생에너지학회 2011년도 추계학술대회 초록집
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    • pp.49.1-49.1
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    • 2011
  • 집광채광 설비는 건축물의 조명에너지 절감 및 자연광의 실내 유입을 위해 적용 가능한 태양에너지설비로써 다른 신 재생 에너지 설비와 다르게 연간에너지생산에 대한 정량적 데이터가 아직까지 부재하다. 집광채광 설비의 설치효과를 판단하기 위해서는 집광채광 설비 설치에 따른 연간 에너지생산량 산출이 필요하며, 이를 위해서는 각 구성부분(집광부, 전송부 및 산광부)의 광전송 효율에 대한 데이터가 구축되어야 한다. 본 연구는 집광채광 설비의 효율 분석에 관한 첫 번째 단계로써 외부광속에 대한 집광부 통과 직후의 내부광속의 비율을 예측하였다. 국내에 보급된 집광채광 설비는 대부분 프리즘형과 광덕트형이며, 우선적으로 집광부 입사면의 경사각과 방위각이 다양하여 내부광속 산출방법론이 매우 복잡한 프리즘형을 분석대상으로 삼았다. 전일사량, 외부조도 및 집광부 내부조도가 측정되었으며, 외부광속으로부터 내부광속을 산출하는 공식을 유도하기 위해 천공상태에 따라 전일사량 측정치가 직산분리 되었다. Perez model과 Liu and Jordon에 의해 제시된 계산식과 입사면 및 집광부 면적을 고려하여 수평면 외부조도 측정치로부터 외부광속이 그리고 내부조도로부터 내부광속이 산출되었다. 입사면의 투과율이 동일하다는 전제 하에 천공상태에 따른 태양광 투과 비율을 도출한 결과, 담천공(Kt ${\leq}$ 0.3)에서 0.39, 부분담천공(0.3${\geq}$ 0.78)에서 1.0으로 나타났다. 도출된 투과비율을 외부광속에 적용하여 내부광속을 계산한 결과치와 측정치는 약 ${\pm}9%$ 정도의 차이를 보였다. 연간 기상데이터에 위와 같은 방법론이 적용되면 프리즘형 집광부의 연간 내부광속이 산출될 수 있다. 또한 기존 연구에서 제시된 발광효율 산출식과 일사 파장에 따른 시감도를 고려하면 매 시간별 외부조도도 산출이 가능하다. 일사량 측정치와 외부조도 측정치 사이의 상관관계를 분석한 결과 결정계수 $R^2$이 0.99인데 반해 일사량 측정치와 외부조도 계산치 사이의 상관관계 결정계수는 0.95로 측정치 보다 약간 작은 값을 갖는다. 이렇게 산출된 외부조도는 각 입사면의 면적을 반영하여 외부광속으로 변환되고, 앞서 산출된 천공상태별 투과비율이 적용됨으로써 내부광속이 도출될 수 있다. 이와 같은 집광부에 대한 연구를 바탕으로 향후 전송부와 산광부 효율을 도출하고 궁극적으로 집광채광 설비를 통해 실내에 전달되는 연간 빛에너지를 예측할 수 있을 것이다. 또한 본 연구의 방법론은 다른 형태의 집광채광 설비에도 적용이 가능할 것으로 판단되며, 국내 집광채광 설비의 연간 에너지생산량에 대한 폭 넓은 데이터 구축이 가능할 것으로 기대된다.

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