• Title/Summary/Keyword: 유전체 분석

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Assessment of Genetic Diversity of Horse Breeds Using Microsatellite Makers (Microsatellite makers를 이용한 마품종 간의 평가 및 유전적 다양성)

  • Jung, Ji-Hye;Lee, Mi-Rang;Ha, Tae-Yong;Kim, Seon-Ku;Shin, Teak-Soon;Kang, Han-Seok;Lee, Hong-Gu;Cho, Gil-Jae;Park, Kyung-Do;Cho, Byung-Wook
    • Journal of Life Science
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    • v.19 no.2
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    • pp.169-173
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    • 2009
  • To assist in selection schemes we estimate the genetic diversity of the horse breeds. Genetic diversity at 13 microsatellite loci was compared in six horse breeds : Jeju Native Horse, American Quarter, Jeju Racing Horse, Mongolian Horse, Japanese Horse and Thoroughbred. All of the equine microsatellite used in this study were amplified and were polymorphic. The expected total heterozygosity over all the populations varied between 0.669 and 0.869 and the expected heterozygosity within population range from 0.569 to 0.219 in this study. The low coefficient of gene differentiation value showed that only 0.118 of the diversity was between horses breeds. The constructed dendrogram from the genetic distance matrix showed little differentiation between horse breeds using DISPAN program. The genetic distance using 13 microsatellites ranged between 0.137 and 0.414 for the six horse breeds. These results confirm the potential use of equine microsatellite loci as a tool for genetic studies in horse populations. The genetic diversity of the six horse breeds to each other closed to their geographical distribution. Suggesting that the loci would be suitable for horse breeds parentage testing. Therefore, Microsatellite marker seems to be very useful for clarifying the evolutionary relationships of closely related populations.

Genetic Analysis of Somaclones Derived from Different Cytotype Plants of Scilla scilloides Complex using RAPD (PCR-RAPD 기법을 이용한 세포 유형이 다른 무릇 (Scilla scilloides Complex) 체세포클론의 유전적 분석)

  • 오정순;방재욱
    • Korean Journal of Plant Tissue Culture
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    • v.26 no.4
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    • pp.235-240
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    • 1999
  • The usefulness of randomly amplified polymorphic DNA (RAPD) was evaluated to access the genetic variation in somaclones derived from different cytotype plants of Scilla scilloides Complex, AA (2n=16), BB (2n=18) and AABB (2n=34). Three arbitrary decamer primers were successfully used to amplify genomic DNA from the somaclones. DNA polymorphism was observed between cytotypes. The total number of bands in AA, BB and AABB somaclones were 110, 116 and 103, and marker bands examined were 15, 19 and 26, respectively. The diversity of types using PCR in AA, AABB and BB somaclones were 39.2%, 72.3% and 45.7%, respectively. RAPD band patterns suggest that type AA is more stable than type BB and AABB. The frequencies of specific band in AA, BB or AABB somaclones were 0.9%, 4.3% and 4.9%, respectively. The applicability and reliability of RAPD markers for evaluating the somaclones are discussed.

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대기압 플라즈마의 바이오필름 제거 효과의 화학적 분석

  • Park, Ju-Yeong;Park, Sang-Hu;Kim, Gi-Jung;Choe, Won-Ho
    • Proceedings of the Korean Vacuum Society Conference
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    • 2016.02a
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    • pp.203.2-203.2
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    • 2016
  • 미생물이 스스로 생성한 고분자 물질에 싸이며 군집체를 형성한 바이오필름은 고체 표면에 부착되며 우리 생활 속에 다양한 형태로 발견할 수 있다. 바이오필름은 미생물에 적합하지 않은 외부 환경으로부터 미생물 스스로 보호하는 기능을 하며, 형성된 바이오필름은 오랜 기간 동안 생존하여 살균제나 항생제로부터 저항성을 가져 살균과정에서 제거되지 않고 2차오염을 야기할 수 있어 식품 가공 기계 및 수도관, 의료기기 등에 형성되었을 경우 식품 오염, 상처 감염 등의 원인이 된다. 이 때문에 위생과 바이오필름의 상관관계를 인지하고 이를 제어하기 위한 연구가 여러 방법으로 진행되고 있다. 대표적인 방법으로는 천연 향균제 개발, 쿼럼 센싱(Quoroum sensing)과 같이 미생물의 신호전달 체계를 차단하는 물질 개발 및 플라즈마 처리 등이 있다. 본 연구에서는 격자형식의 유전장벽방전(DBD) 형식의 플라즈마 소스를 개발하여 바이오필름의 효과적인 제어 가능성을 확인하고, 제어 방식의 관계를 파악하였다. 플라즈마 처리 대상의 화학적 분석을 위하여 유기물질 등을 사용해 플라즈마 처리수 내 화학물질 분석 시스템을 구축하여 이를 기반으로 플라즈마로 생성된 HNO2, NO2-, H2O2 등의 화학종이 가지는 바이오필름 제어 관계를 살펴보았으며, 화학적 방법인 제어효과와 비교하여 플라즈마의 바이오필름 제어 특성에 대해 살펴보았다. 본 발표에서 플라즈마의 바이오필름 제어효과에 대한 분석에 대해 더 자세한 결과가 발표될 예정이다.

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연속압입 분석을 통한 HfN 박막의 질소 분압에 따른 고온 열처리후 물리적 특성 분석

  • Park, Myeong-Jun;Kim, Su-In;Kim, Gyeong-Jin;Park, Yun-Ha;Lee, Chang-U
    • Proceedings of the Korean Vacuum Society Conference
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    • 2013.08a
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    • pp.216.2-216.2
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    • 2013
  • Nano-indenter는 팁을 박막 표면으로부터 일정 깊이까지 일정한 비율로 힘을 팁에 인가하여 그에 따른 박막의 반응을 in-situ로 확인하기 위하여 고안된 장치이며, 박막은 물론 나노 구조물까지 다양한 범위에서 기계적 특성을 분석하기 위하여 사용되고 있다. 이 연구에서는 유전체 및 확산방지막으로 사용되는 Hf을 rf magnetron sputter로 증착하였으며 이때 Ar 가스와 함께 $N_2$ 가스의 혼합 비율을 다르게 하여 HfN을 증착하였다. 질소 분압에 따라 증착된 HfN 박막은 고온중에서 질소의 영향을 확인하기 위하여 $800^{\circ}C$로 질소 분위기에서 20분간 열처리하여 이후 박막의 nano-mechanical 특성을 nanoindenter를 사용하여 확인하였고 최대 압입력을 250 ${\mu}N$으로 고정하였다. 측정결과 고온 열처리후 HfN 박막은 증착시 질소 분압이 0%에서 5%로 증가함에 따라 surface hardness는 8.6 GPa에서 8.1 GPa로 elastic modulus는 123.7 GPa에서 134 GPa로 각각 변화되는 것을 확인할 수 있었다. 특히, 질소 분압이 2.5%로 증착된 HfN 박막은 열처리후 박막 표면의 물리적 특성이 깊이 방향으로 층을 이루고 있어 nano-indenter 압입시 다수의 pop-in이 나타남을 확인하였다.

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Fruiting body development and genetic analysis of somatic hybrids by protoplast fusion in edible fungi (식용버섯의 원형질체 융합체의 자실체 발생 및 유전분석)

  • Yoo, Young Bok;Kong, Won Sik;Oh, Se Jong;Jhune, Chang Sung;Shin, Pyung Gyun;Kim, Beom Gi;Kim, Gyu Hyun;Park, Minsun;Min, Byung Re
    • Journal of Mushroom
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    • v.2 no.3
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    • pp.115-126
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    • 2004
  • Somatic hybrids of inter-compatible and inter-incompatible strains were obtained by protoplast fusion. The fusion products between compatible strains, Pleurotus ostreatus and P. florida, formed heterokaryons, while fusants between incompatible strains such as P. cornucopiae + P. florida, P. ostreatus + Ganoderma applanatum, P. florida + Ganoderma lucidum, and P. ostreatus + Flammulina velutipes formed synkaryons that retained genes from both parents. The heterokaryons showed the same level of basidioma development. In contrast, the synkaryons showed unique characteristics including clamp connection formation at mitosis, either partner basidioma development, and abnormal segregation and recombination compared with inter-compatible strains. Synkaryons can be classified into homokaryoyic and heterokaryotic type. A comparison of somatic hybrids with compatible and incompatible strains was made using random amplified polymorphic DNA (RAPD) analysis. The heterokaryons between compatible species showed the same level of variability and contained both parental RAPD bands. In contrast, most of the synkaryons between incompatible species showed similarity to those of either parental bands and non-parental RAPD bands. Synkaryons can be classified into microgenome insertion type and macrogenome insertion type. A tetrapolar mating system was found among monospore isolates in somatic hybrids and wild type P. ostreatus. Homokaryons from each somatic hybrid combination were paired with tester homokaryons of the initial wild type of P. ostreatus. The changed mating types were identified in progenies. The pattern of mating type switching in somatic hybrids depends on compatibility of fusion partner. There are several factors related to the mechanism of clamp connection formation and fruiting body development of synkaryons. Of these,the major factor may be associated with self-fertility and mating type switching such as homokaryotic fruiting of wild type P. ostreatus. This review will discuss these aspects.

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Analysis of Vasopressin Receptor Type 2(AVPR2) Gene in a Pedigree with Congenital Nehrogenic Diabetes Insipidus : Identification of a Family with R202C Mutation in AVPR2 Gene (신성요붕증 가계에서 바소프레신 V2 수용체(AVPR2) 유전자 분석 : AVPR2 유전자 R202C 돌연변이의 발견)

  • Park June-Dong;Kim Ho-Sung;Kim Hee-Joo;Lee Yoon-Kyung;Kwak Young-Ho;Ha Il-Soo;Cheong Hae-Il;Choi Yong;Park Hye-Won
    • Childhood Kidney Diseases
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    • v.3 no.2
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    • pp.209-216
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    • 1999
  • Purpose : Nephrogenic diabetes insipidus (NDI) is a rare X-linked disorder associated with renal tubule resistance to arginine vasopressin (AVP). The hypothesis that the defect underlying NDI might be a dysfunctional renal AVPR2 has recently been proven by the identification of mutations in the AVPR2 gene in NDT patients. To investigate the association of mutations in th AVPR2 gene with NDI, we analyzed the AVPR2 gene located on the X chromosome. Methods : We have analyzed the AVPR2 gene in a kindred with X-linked NDI. The proband and proband's mother were analyzed by polymerase chain reaction-single strand conformational polymorphism(PCR-SSCP) and DNA sequencing of the AVPR2 gene. We also have used restriction enzyme analysis of genomic PCR product to evaluate the AVPR2 gene. Results : C to T transition at codon 202, predictive of an exchange of tryptophan 202 by cysteine(R202C) in the third extracellular domain was identified. This mutation causes a loss of Hae III site within the gene. Conclusion : We found a R202C missense mutation in the AVPR2 gene causing X-linked NDI, and now direct mutational analysis is available for carrier screening and early diagnosis.

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Experiment on the Sterilization Performance of Airborne Bacteria in Indoor Spaces using the Variation of Ozone Concentration Generated According to the Discharge Time of a Plasma Module with a Dielectric Barrier Discharge Technology (유전체 장벽방전 플라즈마 방전시간에 따른 오존 발생 농도변화의 값을 통한 실내 공간 내 부유세균 살균성능에 대한 실험)

  • Su Yeon Lee;Chang Soo Kim;Gyu Ri Kim;Jong Eon Im
    • Journal of the Society of Disaster Information
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    • v.19 no.2
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    • pp.344-351
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    • 2023
  • Purpose: This study aimed to evaluate the effectiveness of a dielectric barrier discharge (DBD) plasma module for sterilizing airborne bacteria in indoor spaces and measure the concentration of ozone generated during plasma discharge. Method: The DBD plasma module was installed in a 76m3 space, and air samples were collected under various discharge times to compare the reduction of airborne bacteria. Result: The results showed a significant decrease in airborne bacteria, ranging from 92.057% to 99.999%, with an average ozone concentration of 0.04 ppm, below the reference value. Conclusion: The study suggests that plasma discharge can be used as a means of preventing the spread of airborne bacteria and viruses, while ensuring safety for human exposure.

Gas Chromatographic and Mass Spectrometric Determination of Alcohol Homologues in the Korean Folk Sojues (Distilled Liquor) (기체크로마토그래피 및 질량분석법에 의한 민속 소주중의 알코올 동족체 분석)

  • Lee, Dong Seon;Park, Hye Seong;Kim, Geon;Lee, Taek Su;No, Bong Su
    • Journal of the Korean Chemical Society
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    • v.38 no.9
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    • pp.640-652
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    • 1994
  • This work is undertaken to determine alcohol homologues so-called fusel oil that may be present in the Korean folk sojues (distilled liquor) made from grains and to describe sample preparation and analytical method by GC-FID-MS. Solid phase extraction method for sample preparation by using porous styrene divinyl benzene polymer (Porapak Q) was compared with steam distillation and solvent extraction method. Retention behaviors of homologous series of alcohols were also studied. Log values of retention time, molecular weight, boiling point, and capacity factor of alcohols showed linear correlations to the carbon number of an alcohol, to the oven temperature, and to the dielectric constant. Components such as methyl alcohol, n-propyl alcohol, isobutyl alcohol, isopentyl alcohol, and phenethyl alcohol have been identified. The more amount of isopentyl alcohol than other alcohols are contained in the Korean folk sojues, while that of n-propyl alcohol are contained in Chinese kaoliangchiew. Degree of similarity or dissimilarity and classification of the individual samples were discussed using multivariate statistical analysis(principal components analysis) based on GC data.

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Principles of Archaeogenetics and the Current Trends of Ancient Genome Studies (고고유전학의 분석 원리와 최근 고유전체 연구 동향)

  • Kim, Taeho;Woo, Eun Jin;Pak, Sunyoung
    • Anatomy & Biological Anthropology
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    • v.31 no.4
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    • pp.105-119
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    • 2018
  • Archaeogenetics is an academic discipline that aims to establish scientific facts of human history by integrating ancient DNA analyses with archaeological and anthropological evidence. After ancient DNA research was initiated about 30 years ago, it has been innovated so rapidly that the range of analysis has been extended toward the whole genome sequence of ancient genomes in recent 10 years. By this development, researchers have been able to study in detail the origins and migration patterns of hominin species and ancient human populations by approaches of evolutionary genetics. This study has reviewed main principles of the archaeogenetic analysis and the current trends of ancient genome studies with recent achievements. While sampling techniques and statistical analyses have been improved, typical research methods have been established by the findings on hominins and ancient western Eurasia populations. Recently, archaeogenecists have been applying the methods to studying those in other geographical areas. Nonetheless, there is still the lack of ancient genome research about populations in Eastern Asia including the Korean peninsula. This review ultimately aims to predict possibilities and promise of future ancient genome studies of ancient Korean populations.

Interorder Hybridization between Pleurotus ostreatus and Elfvingia applanata by Protoplast Fusion (원형질체(原形質體) 융합(融合)에 의한 느타리버섯과 잔나비걸상버섯의 이목간(異目間) 교잡(交雜))

  • Yoo, Young-Bok
    • The Korean Journal of Mycology
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    • v.22 no.1
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    • pp.107-116
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    • 1994
  • Interorder somatic hybrids were obtained by protoplast fusion between Pleurotus ostreatus in the order Agaricales and Elfvingia applanata in the order Aphyllophorales. The fusants were classified into stable heterokaryons and spontaneously segregated heterokaryons. Hyphae of all fusion products except two strains did not form clamp connections. Out of them, two clamped and three clampless fusants produced mature fruiting bodies by light-dark cycle on sawdust rice bran medium. All of these basidiocarps had clamp connections. Three fusants were analysed with the distribution of progenies and segregation of genetic characters by random spore analyses. The genetic markers were shown to segregate and recombine in the first generation of monospores isolated from basidiocarps. Phenotypes of a large number of auxotrophic progenies were not detected in the two clamped fusants. The aberration ratio of segregants indicated the gene interaction resulting from different genome structure between distantly related species. The polymerase chain reaction (PCR) was adopted for the detection of somatic hybrids nuclear DNA. Four fusants showed a positive results in three kinds of primers. The prominent reaction products are represented by new bands in primer # 87 and # 125. Out of four fusants, two somatic hybrids had non-parental mtDNA patterns when digested with EcoR1 and HindIII. Comparison of somatic hybrids, tissue culture isolates(TC) and multispore germination isolates(MS) were made using esterase isozyme analysis. It is apparent that somatic hybrids had a minor banding patterns which are quite different from those of parents.

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