• Title/Summary/Keyword: 스파이크

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SARS-CoV-2 Variant Prediction Algorithm Using the Protein-Protein Interaction Model with BERT Mask-Filling (BERT Mask-Filling과 단백질-단백질 상호작용 모델을 이용한 SARS-CoV-2 변이 예측 알고리즘)

  • Kong, Hyunseung
    • Proceedings of the Korean Society of Computer Information Conference
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    • 2021.07a
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    • pp.283-284
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    • 2021
  • 최근 SARS-CoV-2 백신들의 예방접종이 진행됨에 따라 코로나 19 팬데믹의 종결이 예상되고 있다. 하지만 계속해서 출현 중인 변종 바이러스들은 팬데믹 종결의 위험요소로 남아있다. 본 논문에서는 사전학습된 단백질 BERT와 단백질-단백질 상호작용 모델을 활용한 SARS-CoV-2 스파이크 단백질의 변이 예측 분석 알고리즘을 제안한다. 제안하는 기술은 변이 단백질 서열의 예측과 변이 단백질과 human ACE2 수용체의 친화도에 따른 자연선택으로 이루어진다. 이를 통해 시간이 지나며 나타날 수 있는 변종 바이러스들을 시뮬레이션 할 수 있어 변종 바이러스들의 해결에 기여할 것으로 기대된다.

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Transgenic Sweetpotato (Ipomoea batatas) Expressing Spike Gene of Porcine Epidemic Diarrhea Virus (돼지 유행성 설사병 바이러스의 스파이크 유전자 발현 형질전환 고구마)

  • Yang Kyoung-Sil;Lim Soon;Kwon Suk-Yoon;Kwak Sang-Soo;Kim Hyun-Soo;Lee Haeng-Soon
    • Journal of Plant Biotechnology
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    • v.32 no.4
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    • pp.263-268
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    • 2005
  • Porcine epidemic diarrhea virus (PEDV) causes acute enteritis in pigs of all ages and is often fatal for neonates. In order to develop sweetpotato plants expressing PEDV antigen, we constructed the vector expressing spike gene of PEDV under the control of sweetpotato sporamin promoter or constitutive CaMV 35S promoter. The spike protein region of PEDV was synthesized by PCR and linked to each promoter, Transgenic sweetpotato [Ipomoea batatas (L.) Lam. cv. Yulmi] plants were developed from embryogenic calli following Agrobacterium tumefaciens-mediated transformation. The co-cultured embryogenic calli transferred to selective MS medium containing 1 mg/L 2,4-D, 100 mg/L kanamycin, and 400 mg/L claforan. These embryogenic calli were subcultured to the same selection medium at 3 weeks interval. Kanamycin-resistant calli transferred to hormone-free MS medium with kanamycin gave rise to somatic embryos and then converted into plantlets in the same medium. Southern blot analysis confirmed that the spike gene of PEDV was inserted into the genome of the sweetpotato plants. RT-PCR revealed that the spike gene of PEDV was highly expressed in transgenic sweetpotato plants.

The Conservation Value of Coral Communities in Moonseom Ecosystem Protected Area (문섬 등 주변해역 생태계보호구역 내 산호군락지의 보전가치)

  • Park, So-Yeon;Lee, Chang-Su;Kim, Min-Seop;Jo, In-Young;Yoo, Seung-Hoon
    • Journal of the Korean Society of Marine Environment & Safety
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    • v.24 no.1
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    • pp.101-111
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    • 2018
  • The Korean government has been trying to conserve a marine ecosystem that has been shifting due to climate change. As part of this effort, the government designated seventy-seven marine species that have been disappearing and deserve to be protected as endangered managing them specially. To generate basic data to guide policy for these endangered species, their value must be measured. OOf the species declared endangered, coral is particularly threatened by climate change, and its management is important. Accordingly, understanding the potential value of reefs, can be an effective way of proving the benefits of continuous management to decision makers and the general public alike. To this end, we have applied the contingent valuation method (CVM), an economic technique of for valuing a environmental and non-market goods such as a coral reef. A national face-to-face survey of 1,000 randomly selected households was conducted in order to determine the public's willingness to pay (WTP) for conserving coral reefs. A one-and-one-half-bound (OOHB) model was adopted to interpret WTP responses, and a spike model was employed to deal with zero WTP responses. The results show that the conservation value of a coral reef can be estimated at 3,016 won per household per year, statistically significant at the 1 % level. Expanding values to the national population gives an annual value of 58.9 billion won. We can conclude that the public is willing to pay a significant amount to conserve coral reefs.

Effect of Stuffing of TiN on the Diffusion Barrier Property(I) : Al/TiN/Si Structure (TiN의 충진처리가 확산방지막 특성에 미치는 영향(I) : Al/TiN/Si 구조)

  • Park, Gi-Cheol;Kim, Gi-Beom
    • Korean Journal of Materials Research
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    • v.5 no.1
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    • pp.87-95
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    • 1995
  • The effect of stuffing of TiN on the diffusion barrier property between A1 and Si was investigated. The stuffing of TiN was performed by annealing in a Nz ambient at $450^{\circ}C$ for 30min. By TEM analysis, it is identified that there are solid-free or open spaces of a b u t 10-20$\AA$ between the grains of asdeposited TiN. In the case of stuffed TiN, the width of solid-free or open spaces has been reduced to about 10$\AA$ or below. The combination of RBS and AES analyses showed that the asdeposited TiN had about 7at.% of oxygen, and that the stuffed TiN had about 10-15at.% of oxygen. The diffusion barrier test result shows that after annealing at $650^{\circ}C$ for lhour, the asdeposited TiN fails due to the formation of A1 spikes and Si pits in the Si substrate. However, in the case of stuffed TiN, there is no indication of Al spikes and Si pits at the same annealing condition. Thus, it is concluded that this stuffing of TiN significantly improves the diffusion barrier property of TiN between A1 and Si. It is considered that the stuffing effect results from the reduced diffusion through grain boundaries due to the reduced spacing of grain boundaries.

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The external benefit of combustible waste-to-energy: A contingent valuation study (가연성 폐기물 에너지화의 외부편익 : 조건부 가치측정법의 적용)

  • Lim, Seul-Ye;Kim, Ho-Young;Yoo, Seung-Hoon
    • Journal of Energy Engineering
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    • v.22 no.3
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    • pp.270-282
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    • 2013
  • Combustible waste into energy policy is an effective method to respond to climate change and depletion of fossil fuels. Combustible waste into energy is the process of generating energy in the form of electricity and/or heat from the combustible waste such as vinyl, paper and plastic. This study tries to estimate the external benefit of enhancing the ratio of combustible waste into energy to primary energy from 1.89% to 5% using contingent valuation(CV) method. To this end, we report the results from a CV survey to elicit the willingness to pay (WTP) for combustible waste into energy. A CV survey of 500 households was conducted in the Seoul by using person-to-person interviews. Thus, the procedures of applying and the findings from the one-and-one-half bounded dichotomous choice spike model used to deal with the zero WTP responses are provided in the paper. The results show that the average WTP is estimated to be 2,724 won per household per month and statistically significant at the 5% level. Expanding the value to the Seoul gives us an aggregate value of 13.7 billion won per year.

A Study on Gilded Ornamental Shoes Excavated from Beopcheon-ri, Wonju (원주(原州) 법천리출토(法泉里出土) 금동식리(金銅飾履)에 대한 연구(硏究))

  • Kwon, Hyuk-nam;Yu, Hei-sun
    • Conservation Science in Museum
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    • v.3
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    • pp.65-69
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    • 2001
  • Scientific analysis are carried on gilded ornamental shoes, which have been excavated from tomb No 1. and No 4. in Beopcheon-ri, Wonju dated from Baekje Period. This object is a very important because it provides valuable information on the development of metal-making techniques of that period. Thus, this article illustrates the investigation conducted to reveal how the object was created using what materials and techniques. Instead of the spikes-attached to the bottom plate of the object-that couldn't be sampled, a sample of a decorative rivet showing a similar structure to the spikes-attached to the other parts of the shoes-was prepared for a cross-section examination. Using radiography and microscopes, it was found that the head of a spike was placed and then punched to the gilded plate, so it can be held to the shoes. Under the SEM-EDS, the cross-section of the rivet shows that the gilding layer was applied before the attachment of the rivets. It also shows that the gilding layer is distributed unevenly and there are empty spaces indicating amalgam gilding was employed. This was confirmed as Mercury was detected on the SEM-EDS analysis of the object. The examination of the microstructure of the plate using the SEM-EDS revealed that the object is made of a single copper alloy plate with recrystallized twining and non-metallic white inclusions, which found to be lead in this case.

Damage Status of Turnout System with Wooden Sleeper of Concrete Track on Urban Transit (도시철도 콘크리트궤도 목침목 분기기의 손상현황)

  • Choi, Jung-Youl;Han, Kyung-Sung;Bong, Jae-Gun;Jang, Cheol-Ju;Chung, Jee-Seung
    • The Journal of the Convergence on Culture Technology
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    • v.5 no.4
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    • pp.379-385
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    • 2019
  • The purpose of this study is to investigate the damage status of wood sleepers on concrete track of urban transit at different locations and to analyze the causes of damages. In addition, the turnout maintenance history during the service period of about 24 years was analyzed in conjunction with the train passing tonnage and that was to compare the current repair history. The most frequent damage components were rail, tie plate, spike and wooden sleeper. And, the damage caused by the defect of the rail fastening system such as spike and tie plate according to the deformation of the wooden sleeper was analyzed as the main type of damage. As a result, the damage of track components of turnout system was on the increase because they are directly affected by the train passing tonnage. The supplementary points of the check sheet for current turnout maintenance were derived and the improvement proposal was suggested based on the research results.

Numerical Analysis of Wave Transformation of Bore in 2-Dimensional Water Channel and Resultant Wave Loads Acting on 2-Dimensional Vertical Structure (2차원수조내에서 단파의 변형과 구조물에 작용하는 단파파력에 관한 수치해석)

  • Lee, Kwang Ho;Kim, Chang Hoon;Kim, Do Sam;Hwang, Young Tae
    • KSCE Journal of Civil and Environmental Engineering Research
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    • v.29 no.5B
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    • pp.473-482
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    • 2009
  • This study numerically discusses wave forces acting on a vertical wall such as breakwaters or revetments, subjected to incident undular or turbulent bores. Due to the complex hydrodynamics of bore, its wave forces have been predicted, mainly through laboratory experiments. Numerical simulations in this paper were carried out by CADMAS-SURF(CDIT, 2001), which is based on Navier-Stokes momentum equations and VOF method (Hirt and Nichols, 1981) for tracking free water surface. Its original source code was also partly revised to generate bore in the numerical water channel. Numerical raw data computed by CADMAS-SURF included great strong spike phenomena that show the abrupt jumps of wave loads. To resolve this undesired noise of raw data, the band-pass filter with the frequency of 5Hz was utilized. The filtered results showed reasonable agreements with the experimental results performed by Matsutomi (1991) and Ramsden (1996). It was confirmed that CADMASSURF can be applied to the design of coastal structures against tsunami bores. In addition, the transformation process and propagation speed of bores in the same 2-d water channel were discussed by the variations of water level for time and space. The numerical results indicated that the propagation speed of bore was changed due to the nonlinear interactions between negative and reflected waves.

Preconcentration of Copper(II) Using Mesoporous Organo-Silicas and Determination by Flame Atomic Absorption Spectrometry (메조다공성 유기-실리카를 이용한 구리(II)의 예비농축과 불꽃원자 흡수분광법으로의 정량)

  • Moghimi, Ali
    • Journal of the Korean Chemical Society
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    • v.52 no.2
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    • pp.155-163
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    • 2008
  • .A simple and reproducible method for the rapid extraction and determination of trace amounts of copper(II) ions using mesoporous organo-silicas mesoporous silica and atomic absorption spectrometry is presented. Common coexisting ions did not interfere with the separation and determination. The preconcentration factor was 100 (1 ml elution volume) for a 100 ml sample volume. The limit of detection of the proposed method is 1.0 ng ml-1. The maximum sorption capacity of sorbent under optimum conditions has been found to be 5mg of copper per gram of sorbent. The relative standard deviation under optimum conditions was 2.8% (n=10). Accuracy and application of the method was estimated by using test samples of natural and synthetic water spiked with different amounts of copper(II) ion.

Transient Heat Transfer and Structural Analyses for the Turbopump Turbine of a Liquid Rocket Engine (액체 로켓 터보 펌프 터빈의 천이 열전달 및 구조 해석)

  • Yoo, Jae-Han;Choi, Ji-Hoon;Lee, In;Han, Jae-Hung;Jeon, Seong-Min;Kim, Jin-Han
    • Journal of the Korean Society for Aeronautical & Space Sciences
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    • v.32 no.3
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    • pp.58-65
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    • 2004
  • Thermal and structural finite element analyses were performed for the turbopump turbine bladed disk model with shroud of a liquid rocket engine. The only 1/80 part model was analyzed which consists of 3D eight node isoparametric solid elements. The applied loading history consists of a startup condition with a thermal spike and a steady state. Heat transfer coefficient on the blade was predicted using the commercial Navier-Stokes solver, Fluent. Transient thermal responses during startup and steady states were calculated using a 3D finite element code developed. Maximum stress and shroud tip displacement under the influence of centrifugal and thermal loading were also determined.