• Journal of KIISE:Computer Systems and Theory
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• v.32 no.11_12
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• pp.578-586
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• 2005

In this Paper we consider the problem of sequence alignment with quality scores. DNA sequences produced by a base-calling program (as part of sequencing) have quality scores which represent the confidence level for individual bases. However, previous sequence alignment algorithms do not consider such quality scores. To solve sequence alignment with quality scores, we propose a measure of an alignment of two sequences with orality scores. We show that an optimal alignment in this measure can be found by dynamic programming.

• Proceedings of the Korean Information Science Society Conference
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• 1998.10c
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• pp.633-635
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• 1998

RNA 분자의 이차 구조를 예측하고 예측된 구조를 분석, 평가하기 위하여 시각화하는 작업은 RNA의 구조에 대한 연구에 있어서 가장 필수적인 과정이다. 본 논문은 이차 구조를 시각화하는 알고리즘과 이를 구현한 프로그램을 소개한다. 이 알고리즘은 vector와 vector space를 이용하여 RNA 분자의 구조 요소가 배치될 방향과 공간을 나타낸다. 구조 요소가 겹치지 않도록 배치될 방향과 공간을 효율적으로 찾기 위하여, 구조 요소를 배치하는 순서에 관한 휴리스틱과 구조 요소를 배치하는 방법에 관한 휴리스틱을 사용한다. 기존의 시각화 알고리즘이 구조요소를 순차적으로 배치하면서 겹침 현상이 발생하면, 이를 제거 하기 위하여 이미 배치한 구조 요소들을 재배치 하거나 변형하는 것에 반하여, 이 알고리즘은 사용자의 판단이나 수작업에 의존하지 않고 겹침 현상이 거의 없는 이차 구조를 효율적으로 생성한다는 점에서 기존 방법을 많이 개선하였다.

• Journal of the Institute of Electronics Engineers of Korea SP
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• v.43 no.6 s.312
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• pp.85-96
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• 2006

This paper deal with a method for efficient placing 2 dimensional virtual labels on the view plane. The proposed method has suitable computational costs for realtime processing and it overcomes the local minima problem which is not solved in previous automatic label placement algorithms, and also it enhances readability by placing labels in less congestion area on the view plane. Background analysis must be considered for label placement. However previous works do not concern with this problem seriously. And furthermore, automatic label placement algorithm and background analysis algorithm have been studied separately in their own field. This paper proposed the background analysis method using background color and texture component to enhance readability, and it is the first research about analyzing the background of color image and applying it in automatic label placement field. This paper shown improved placement performance through combining automatic label placement algorithm and background analysis algorithm organically, and various experiments verified it.

• 한국ITS학회:학술대회논문집
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• 2008.11a
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• pp.205-210
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• 2008

• Journal of Intelligence and Information Systems
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• v.13 no.2
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• pp.55-68
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• 2007

DNA sequence alignment algorithms in computational molecular biology have been improved by diverse methods. In this paper, we proposed a DNA sequence alignment algorithm utilizing quality information and a fuzzy inference method utilizing characteristics of DNA sequence fragments and a fuzzy logic system in order to improve conventional DNA sequence alignment methods using DNA sequence quality information. In conventional algorithms, DNA sequence alignment scores were calculated by the global sequence alignment algorithm proposed by Needleman-Wunsch applying quality information of each DNA fragment. However, there may be errors in the process for calculating DNA sequence alignment scores in case of low quality of DNA fragment tips, because overall DNA sequence quality information are used. In the proposed method, exact DNA sequence alignment can be achieved in spite of low quality of DNA fragment tips by improvement of conventional algorithms using quality information. And also, mapping score parameters used to calculate DNA sequence alignment scores, are dynamically adjusted by the fuzzy logic system utilizing lengths of DNA fragments and frequencies of low quality DNA bases in the fragments. From the experiments by applying real genome data of NCBI (National Center for Biotechnology Information), we could see that the proposed method was more efficient than conventional algorithms using quality information in DNA sequence alignment.

• Proceedings of the Korea Information Processing Society Conference
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• 2023.05a
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• pp.18-19
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• 2023

최근 상품의 특성을 고려하지 않은 박스 크기 선택과 박스 공간 내 비효율적인 상품 배치로 인하여 박스의 파손 문제가 지속적으로 제기되고 있다. 이는 적재하고자 하는 상품의 특성을 고려하지 않고 상품을 대략적으로 배치하기 때문이다. 따라서 본 논문에서는 면적과 무게와 같은 상품의 특성을 고려한 상품 배치 최적화 알고리즘을 제안하여 공간 배치의 비효율성 문제를 최소화하고자 한다. 제안한 상품 배치 최적화 알고리즘은 검색 트리 (search tree)와 상품 특성 기반 평가 함수(evaluation function)로 구성되어 있다. 상품 특성 기반 평가 함수는 면적, 무게 및 바닥에 닿는 면적을 고려하여 설계되었다.

• Journal of Advanced Navigation Technology
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• v.10 no.4
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• pp.385-393
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• 2006

In this paper, we proposed a location estimation algorithm considering an extension of searching area in 2.45GHz band RTLS and analyzed its performance in terms of an average estimation error distance. The extendable searching area was assumed to be square of $300m{\times}300m$ and 2 dimensions. The arrangement shape of available readers was considered circle, rectangle, and shrinkage rectangle for extendable searching area. Also, we assumed that propagation path was LOS (Line-Of-Sight) environment, and analyzed the estimation error performance as a function of the number of received sub-blink considering an arrangement shape of available readers in searching area. From the results, compared with rectangle shape, circle shape showed the higher estimation accuracy. Also, we confirmed that the proposed location estimation algorithm provided high estimation accuracy in the shrinkage rectangle shape that was suitable for extension of searching area.

• Proceedings of the Korean Information Science Society Conference
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• 1998.10c
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• pp.66-68
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• 1998

이열 기계 배치 문제는 기계의 수가 많아지면 기존의 알고리즘으로는 실제적으로 해결이 불가능한 조합 최적화 문제이다. 본 논문에서는 최적의 기계 배치를 찾기 위하여 유전자 알고리즘을 사용하고 기존의 방법과 비교하여 선택 과정의 개선을 통해 최적화의 성능을 향상시키는 방법에 대하여 고찰한다. 실험을 통하여 제안된 방법의 성능을 분석하였다.

• Journal of the Korean Institute of Intelligent Systems
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• v.20 no.3
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• pp.406-412
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• 2010

In this paper, we formally define the problem of maximizing the coverage of sensor deployment, which is the optimization problem appeared in real-world sensor deployment, and analyze the properties of its solution space. To solve the problem, we proposed novel genetic algorithms, and we could show their superiority through experiments. When applying genetic algorithms to maximum coverage sensor deployment, the most important issue is how we evaluate the given sensor deployment efficiently. We could resolve the difficulty by using Monte Carlo method. By regulating the number of generated samples in the Monte Carlo evaluation of genetic algorithms, we could also reduce the computing time significantly without loss of solution quality.

• Journal of the Institute of Electronics Engineers of Korea SD
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• v.42 no.12
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• pp.61-70
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• 2005

In this paper, we propose an efficient global placement algorithm which is an enhanced version of Hybrid Placer$^{[25]}$, a standard cell placement tool, which uses a middle-down approach. Combining techniques used in the well-known partitioner hMETIS and the RBLS(Relaxation Based Local Search) in Hybrid Placer improves the quality of global placements. Partitioning techniques of hMETIS is applied in a top-down manner and RBLS is used in each level of the top-down hierarchy to improve the global placement. The proposed new approach resolves the problem that Hybrid Placer seriously depends on initial placements and it speeds up without deteriorating the placement quality. Experimental results prove that solutions generated by the proposed method on the MCNC benchmarks are comparable to those by FengShui which is a well known placement tool. Compared to the results of the original Hybrid Placer, new method is 5 times faster on average and shows improvement on bigger circuits.