• Proceedings of the Korean Information Science Society Conference
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• 2006.06a
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• pp.13-15
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• 2006

microRNA는 유전자의 전사 후 과정에서 negative regulation을 담당하는 small noncoding RNA의 한 증류이다. 최근까지 330여개의 인간 microRNA가 발견되었지만 그들의 기능이 밝혀진 것은 소수에 불과하다. microRNA의 기능은 3'UTR에 불완전 상보결합을 통해 negative regulation을 받게 되는 유전자의 기능으로부터 유추되는 것이 일반적이다. 특별히 유전체상에 군집화 된 microRNA들은 하나의 전사체로부터 발현되는 것으로 판단되며, 같은 또는 관련된 기능을 하거나 같은 목표 유전자를 조절하기 위한 functional family일 가능성이 높다. 또한 이러한 functional family는 하나의 전사체로부터 발현되기 때문에, 조직별로 조건별로 같은 발현 패턴을 보여야 한다. 본 연구에서는 발현데이터로부터 microRNA functional family를 탐색하기 위해, 5개의 연구 그룹에서 공개한 조직별 microRNA 발현데이터를 표준화 작업을 거친 후 통합하고 k-nearest neighbor 알고리즘을 이용해 결측치를 보정한 후 microRNA 발현사이의 correlation을 계산한다. 이때 데이터 통합에서 생기는 문제에 robust한 결과를 얻기 위해 실제 발현데이터가 아닌 rank 데이터부터 correlation을 측정한다. 계산된 spearman ranked correlation 결과와 microRNA의 genomic coordination 정보로부터 34개의 functional family를 정의할 수 있었다.

• Journal of Applied Biological Chemistry
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• v.66
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• pp.484-491
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• 2023

Maize is one of the major crops consumed in worldwide, which nutrients accounts for a large amount of starch, but also functional components, and phenolic acid is known to have a high content. Maize is divided into waxy maize, sweet maize, and normal maize with its shape and use, therefore there is also a difference in nutritional composition. This study was conducted to analyze the content of functional components according to the type of maize and to produce natural variation data in consideration of environmental factors. 3 shapes of maize (waxy maize, sweet maize, and normal maize) samples cultivated in 3 regions (Suwon, Daegu, and Hongcheon) were analyzed using HPLC and GC-TOF-MS. Comparing with type through ANOVA, multivariate statistical analysis, Pearson correlation analysis, 28 components, including carotenoids and tocopherols, showed significant differences among a total of 32 components (p <0.05), 15 of them showed very significant differences (p <0.001). When comparing with regions, 15 components showed significant differences and only vanillate, syringate, C23-ol of them showed most significant differences (p <0.001). As a result of principal component analysis, cluster classification was distinguished by shape than by region, with α-carotene, cholesterol for waxy maize, vanillate and stigmasterol for sweet maize, lutein and β-carotene for normal maize had a great effect on cluster formation. It suggests that the content of functional components is more affected by genetic factors than environmental factors.

• KIPS Transactions on Software and Data Engineering
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• v.6 no.6
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• pp.321-328
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• 2017

We have implemented a technique to correct the brightness, saturation, and contrast of an image according to the degree of light, and further compensate the backlight. Backlight compensation can be done automatically or manually. For manual backlight compensation, we have to select the region of interest (ROI). ROI can be selected by connecting the outline of the desired object. We make users select the region delicately with the new magnetic lasso tool. The previous lasso tool has a disadvantage that the start point and the end point must be connected. However, the proposed lasso tool has the advantage of selecting the region of interest without connecting the start point and the end point. We can automatically obtain various results of backlight compensation by adjusting the number of k-means clusters for texture extraction and the threshold value for binarization.

• Journal of Biomedical Engineering Research
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• v.16 no.4
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• pp.425-430
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• 1995

The correlation technique has been widely used in ctRl data processing. The proposed CLT (clus- tering threshold) technique is a modified CCT (correlation coefficient threshold) technique and has many advantages compared with the conventional CCT technique. The CLT technique is explained by the following two steps. First, once the correlation coefficient map above the proper TH value is obtained using the CCT technique which is discrete and includes splash noise data, then the spurious pixels are rejected and the real neural activity pixels extracted using an nxn matrix box. Second, a clustering operation is performed by the two correction rules. The real neuronal activated pixels can be clustered and the false spurious pixels can be suppressed by the proposed CLT technique. The proposed CLT technique used in the post processing in ctRl has advantages over other existing techniques. It is especially proved to be robust in noisy environment.

• Korean Journal of Microbiology
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• v.45 no.4
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• pp.354-361
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• 2009

This study was carried out to develop an effective biocarrier-mediated bioaugmentation technology which will be useful for remediation of the crude oil-contaminated marine sediments. Enrichment of several microbial communities was made from several oil-polluted seashore sites and the two distinctively functional consortia have been successfully selected. These two consortia were grown together and used to manufacture the microbial agents for bioaugmentation of marine sediments polluted with crude oil. The most dominant species in the mixed culture was identified as Alcanivorax borkumensis based on pure culture and DGGE analysis. Bioaugmentation of oil-polluted marine sediments with the microbial agent MA-2 formulated using the mixed culture and biocarriers (activated carbon and minerals) was more effective, especially in combination with an oxygen producing (releasing) compound (ORC). Ninty percent of TPH was removed in the presence of ORC in 35 days while 74% in the absence of ORC. This indicated that the indigenous consortial degraders could be immobilized on the active carbon as a biocarrier to manufacture microbial agents and then effectively bioaugmented for remediation of the oil-polluted sediments.

• Journal of Digital Convergence
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• v.17 no.1
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• pp.9-27
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• 2019

The purpose of this study is to examine consumers' responses to mobile payment services by using a text-mining technique focusing on Samsung Pay as it is used in both online and offline transactions. We conducted text frequency analysis, text clustering analysis, and text network analysis using R programming. The major findings are as follows. First, the most frequently used key words referenced the brand names of the mobile devices, the replacement of traditional wallets and unique functions of Samsung Pay. Second, there was a clear split between positive and negative responses at the macro level. Third, replacement of traditional wallets played a great role in the positive responses and continuous use of mobile payment services. This study provides in-depth understanding of consumer responses toward mobile payment services. It also offers practical implications that may help mobile payment marketers correspond to consumer values and expectations, thus increasing consumer satisfaction.

• Korean Journal of Environmental Biology
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• v.35 no.2
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• pp.143-151
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• 2017

This study illustrates changes in the epilithic diatom assemblages in response to urban climatic conditions. We further assess the impact of abnormal urban climate to the urban stream environment. Epilithic diatoms, water chemical and physical variables were sampled every quarter, and assessed at 3 Oncheon stream sites, for a period of two years(from 2013~2014). The variation of physiochemical properties such as BOD, COD, T-N and T-P, show that the water quality was strongly influenced with long periods of drought and flood disturbance. Epilithic diatom assemblages were separated along the stream sites; however, the physical disturbance from urban drought and stormwater changed the composition of diatom assemblages instead of decreasing the taxonomic richness. Thus, our results suggest that epilithic diatom assemblages are altered in response to urban climatic changes, resulting in variations of stream conditions. Hence, strategies of climate change adaptation are required when considering urban stream environments.

• Journal of Soil and Groundwater Environment
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• v.11 no.1
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• pp.1-6
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• 2006

The analysis of functional population and its dynamics on the environment is essential for understanding bioremediation in environment. Here, we report a method for oligonucleotide microarray for the monitoring of aliphatic and aromatic degradative genes. This microarray contained 15 unique and group-specific probes which were based on 100 known genes involved pathways in biodegradation. Hybridization specificity tests with pure cultures, strain Pseudomonas aeruginosa KCTC 1636 indicated that the designed probes on the arrays appeared to be specific to their corresponding target genes. It was found that the presence of 8 genes encoding alkane, naphthalene, biphenyl, pyrene (PAH ring-hydroxylating) degradation pathway could be detected in oil contaminated soil sample. Therefore, the findings of this study strongly suggest that oligonucleotide microarray is an effective diagnostic tool for evaluating biodegradation capability in oil contaminated subsurface environment.

• KIISE Transactions on Computing Practices
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• v.23 no.7
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• pp.434-439
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• 2017

More and more people are suffering from sleep disturbance, which can have many different causes. The healthcare industry, which can help people with this disability, is one technology that is currently in the spotlight. However, current services are vulnerable to data concentration, because they are simple telemedicine services that transmit all data to a remote server and process the data on the server. They have a disadvantage in that the data cannot be streamed in real time by synchronizing the biometric data of remotely protected persons. In order to solve this problem, we propose a service structure for streaming biometric data of protected persons to a hospital or guardian in real time, using a self-organizing distributed middleware platform without a central server. We prove that it is possible to provide an effective streaming service by evaluating the service start time and average delay time.

• Korean Journal of Organic Agriculture
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• v.23 no.4
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• pp.767-779
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• 2015

soil microbial activities and diversities in a newly reclaimed soil. Soil chemical properties, population of microbe, microbial biomass, and properties of microbial community were investigated under 4 different treatment (animal manure compost+green manure, chemical fertilizer, and without fertilizer). The experiment was conducted for 3 years from 2012 to 2014. The most of chemical properties in the animal manure compost+green manure treatment were increased continually compare to chemical fertilizer and without fertilizer. The population of bacteria and fungi were higher in the animal manure compost+green manure treatment, however, there was no difference on actinomyces. Soil microbial biomass C content was higher in the animal manure compost+green manure treatment than in chemical fertilizer and without fertilizer. Biolog examination showed that catabolic diversities of bacterial communities were higher in the treatment of animal manure compost+green manure. It was showed that principle component analysis of the Biolog data differentiated the organic matter amended soils from NPK and control. These results indicated that application of animal manure compost+green manure had a beneficial effect on soil microbial properties.