| 1 |
Klein-Marcuschamer, D., Santos, C. N., Yu, H. and Stephanopoulos, G. 2009. Mutagenesis of the bacterial RNA polymerase alpha subunit for improvement of complex phenotypes. Appl. Environ. Microbiol. 75, 2705-2711.
DOI
|
| 2 |
Koressaar, T. and Remm, M. 2012. Characterization of species- specific repeats in 613 prokaryotic species. DNA Res. 19, 219-230.
DOI
|
| 3 |
Lee, D. G. and Lee, S. H. 2015. Investigation of conservative genes in 711 prokaryotes. J. Life Sci. 25, 1007-1013.
DOI
|
| 4 |
Mann, S. and Chen, Y. P. 2010. Bacterial genomic G + C composition-eliciting environmental adaptation (Review). Genomics 95, 7-15.
DOI
|
| 5 |
Merhej, V., Royer-Carenzi, M., Pontarotti, P. and Raoult, D. 2009. Massive comparative genomic analysis reveals convergent evolution of specialized bacteria. Biol. Direct. 10, 13.
|
| 6 |
Nakabachi, A., Ueoka, R., Oshima, K., Teta, R., Mangoni, A., Gurgui, M., Oldham, N. J., van Echten-Deckert, G., Okamura, K., Yamamoto, K., Inoue, H., Ohkuma, M., Hongoh, Y., Miyagishima, S., Hattori, M., Piel, J. and Fukatsu, T. 2013. Defensive bacteriome symbiont with a drastically reduced genome. Curr. Biol. 23, 1478-1484.
DOI
|
| 7 |
Caspi, R., Altman, T., Dreher, K., Fulcher, C. A., Subhraveti, P., Keseler, I. M., Kothari, A., Krummenacker, M., Latendresse, M., Mueller, L. A., Ong, Q., Paley, S., Pujar, A., Shearer, A. G., Travers, M., Weerasinghe, D., Zhang, P. and Karp, P. D. 2012. The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/ genome databases. Nucleic Acids Res. 40, D742-D753.
DOI
|
| 8 |
Firrao, G., Gibb, K. and Streten, C. 2005. Short taxonomic guide to the genus 'Candidatus Phytoplasma'. J. Plant Pathol. 87, 249-263.
|
| 9 |
ftp://ftp.ncbi.nih.gov/pub/COG/COG2014/data
|
| 10 |
Galperin, M. Y., Makarova, K. S., Wolf, Y. I. and Koonin, E. V. 2015. Expanded microbial genome coverage and improved protein family annotation in the COG database. Nucleic Acids Res. 43, D261-D269.
DOI
|
| 11 |
Han, K., Li, Z. F., Peng, R., Zhu, L. P., Zhou, T., Wang, L. G., Li, S. G., Zhang, X. B., Hu, W., Wu, Z. H., Qin, N. and Li, Y. Z. 2013. Extraordinary expansion of a Sorangium cellulosum genome from an alkaline milieu. Sci. Rep. 3, 2101.
DOI
|
| 12 |
Himmelreich, R., Plagens, H., Hilbert, H., Reiner, B. and Herrmann, R. 1997. Comparative analysis of the genomes of the bacteria Mycoplasma pneumoniae and Mycoplasma genitalium. Nucleic Acids Res. 25, 701-712.
DOI
|
| 13 |
http://biocyc.org/organism-summary?object=NEQU228908
|
| 14 |
Hutchison III, C. A., Chuang, R. Y., Noskov, V. N., Assad- Garcia, N. and Deerinck, T. J., et al. 2016. Design and synthesis of a minimal bacterial genome. Science 351, aad6253.
DOI
|
| 15 |
Klappenbach, J. A., Dunbar, J. M. and Schmid, T. M. 2000. rRNA operon copy number reflects ecological strategies of bacteria. Appl. Environ. Microbiol. 66, 1328-1333.
DOI
|
| 16 |
Ochman, H. and Davalos, L. M. 2006. The nature and dynamics of bacterial genomes. Science 311, 1730-1733.
DOI
|
| 17 |
Shoji, S., Dambacher, C. M., Shajani, Z., Williamson, J. R. and Schultz, P. G. 2011. Systematic chromosomal deletion of bacterial ribosomal protein genes. J. Mol. Biol. 413, 751-761.
DOI
|
| 18 |
Tautz, D. and Domazet-Loso, T. 2011. The evolutionary origin of orphan genes. Nat. Rev. Genet. 12, 692-702.
|
webmaster
