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Intraspecific sequence variation of trnL/F intergenic region (cpDNA) in Sedum takesimense Nakai (Crassulaceae) and aspects of geographic distribution  

Lee, Woong (Department of Biology, College of Natural Science, Kyungpook National University, Research Institute for Dokdo and Ulleungdo Island, Kyungpook National University)
Pak, Jae-Hong (Department of Biology, College of Natural Science, Kyungpook National University, Research Institute for Dokdo and Ulleungdo Island, Kyungpook National University)
Publication Information
Korean Journal of Plant Taxonomy / v.40, no.3, 2010 , pp. 157-162 More about this Journal
Abstract
Sequences of the trnL/F intergenic spacer of chloroplast DNA were used to investigate the intraspecific evoution and phylogeography of Sedum takesimense (Crassulaceae). The trnL/F intergeneric spacer sequences from 32 individuals of S. takesimense were either 291 bp (17 samples "without indel" in the following) or 297 bp (15samples "with indel 1") in length due to an indel of 6 bp. Two main cpDNA haplotypes were detected within S. takesimense. The haplotype with indel was found on Ulleung Island and without indel on Ulleung Island and Dok Island. This confirmed the existence of two cpDNA lineages with different geographical distributions. The cpDNA sequence analysis also suggested a putative long-distance dispersal event between Ulleung Island and Dok Island.
Keywords
Sedum takesimense; trnL/F intergenic spacer; haplotype; intraspecific evolution; phylogeography; long-distance dispersal;
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1 Amano, M. 1990. Biosystematic study of Sedum L. subgenus Aizoon. Bot. Mag. Tokyo 103: 67-85.   DOI
2 Amano, M. and H. Ohba. 1992. Biosystematie study of Sedum L. subgenus Aizoon. Bot. Mag. Tokyo 105: 431-441.   DOI
3 Carlquist, S., B. G. Baldwin and G. D. Carr. 2003. Tarweeds & silverswords: evolution of the Madiinae (Asteraceae). Missouri Bot. Gard. Press, St. Louis.
4 Cavers, S., C. Navarro and A. J. Lowe. 2003. Chloroplast DNA Phylogeography reveals colonization history of a Neotropical tree, Cedrela ocorata L., in Mesoamerica. Mol. Ecology 12: 1451-1460.   DOI   ScienceOn
5 Chung. Y. H. and J. H. Kim. 1989. A taxonomic study of Sedum section Aizoon in Korea. Korean J. PI. Taxon. 19: 189-227.
6 Hewitt, G. 2000. The genetic legacy of the Ice Ages. Nature 405: 907-913.   DOI   ScienceOn
7 Ito, M., A. Soejima and M. Ono. 1998. Genetic diversity of tile endemic plants of Bonin (Ogasawara) Islands. In Evolution and speciation of island plants. Stuessy, T. F., Ono, M. (eds.). Cambridge: Cambridge University Press, 141-154.
8 Kim, Y. K. 1985. Petrology of Ulleung volcanic island, Korea - Part 1. Geology. Journal of Jap. Ass. Minerolog. Petrolog. and Eco. Geolog. 80: 128-135.
9 Kwon, S. T. and J. H. Jeong. 1999. Genetic relationship among Sedum species based on morphoIogical characteristics and RAPD analysis. Kor. J. Hort. Sci. Technol. 17(4): 489-493.
10 Lee, D. H., S. H. Cho and J. H. Pak. 2007. The analysis of vascular plant species composition in Dok-do islad. Korean J. PI. Taxon. 37: 545-563.
11 Lee, G. B., Y. G. Yoo and K. R. Park. 2003. Morphological relationships of Korean species of Sedum L. subgenus Aizoon (Crassulaceae). Koren J. PI. Taxon 33(1): 1-15.
12 Lee, T. B. 2003. Coloured Flora of Korea. Hyangmoonsa, Seoul (in Korean).
13 Lee, W. T. 1996. Standard Illustrations of Korean Plants. Academy press, Seoul (in Korean).
14 Mort, M. E., D. E. Soltis, P. S. Soltis, J. Francisco-Ortega and A.SantosGuerra. 2002. Phylogenetics and evolution of the Macaronesian clade of Crassulaceae inferred from nuclear and chloroplast sequence data. Syst. Bot. 27: 271-288.
15 Nakai, T. 1919. Report on the Vegetation of the Island Ooryongto or Dagelet Isl., Corea.
16 Nakai, T. 1919. The vegetation of Dagelet Island: Its formation and floral relationship with Korea and Japan. Proc. 3rd Pan-Pacific Sci. Congr. 1: 911-914.
17 Ohba, H. 1978. Generic and infrageneric classification of the old world sedoideae. J. Fac. Sci. Univ. Tokyo 12: 139-198.
18 Oh, S. Y. 1978. Floral studies on the vascular plants of the Dagelet Island. Research Review of Kyungpook National University 25: 131-201.
19 Pfosser, M. F., G. Jakubowsky, P. M. Schluter, T. Fer, H. Kato, T. F. Stuessy and B.-Y. Sun. 2006. Evolution of Dystaenia takesimana(Apiaceae) endemic to Ullung island, Korea. PI. Syst. Evol. 256: 159-170.
20 Petit, R. J., U. M. Csaikl, S. Bordacs, K. Burg, E. Coart, J. Cottrell, B. van Dam, J. D. Deans, S. Dumolin-Lapegue, S. Fineschi, R. Finkeldey, A. Gillies, I. Glaz, P. G. Goicoechea, J. S. Jensen, A. O. Konig, A. J. Lowe, S. F. Madsen, G. Matyas, R. C. Munro, M. Olalde, M.-H. Pemonge, F. Popescu, D. Slade, H. Tabbener, D. Taurchini, S. G. M. de Vries, B. Ziegenhagen and A. Kremer. 2002. Chloroplast DNA variation in european white oaks. Phylogeography and patterns of diversity based on data from more than 2006 populations. For. Ecol. Manage. 156: 5-26.   DOI   ScienceOn
21 Pfosser, M. F., J. Guzy-Wrobelska and B.-Y. Sun. 2002. Origin of species of Acer (Sapindaceae) endemic to Ulleung Island, Korea. Syst. Bot. 27: 351-367.
22 Rendell, S. and R. A. Ennos. 2003. ChIoroplast DNA diversity of the dioecious European tree Ilex aquifolium L. (Englishholly). Mol. Ecol. 12: 2681-2688.   DOI   ScienceOn
23 Sin, J. H., Y. G. Yoo and K. R. Park. 2002. A palynotaxonomic study of the korean Crassulaceae. Korean J. Electron Microscopy 32(4): 345-360.   과학기술학회마을
24 Soltis, D. E., M. A. Gitzendanner, D. D. Strenge and P. S. Soltis. 1997. Chloroplast DNA interspecific phylogeography of plants from the pacific northwest of north America. PI. Syst. Evol. 206: 353-373.   DOI   ScienceOn
25 Sun, B.-Y., M. R. SuI, J. A. Im, C. H. Kim and T. J. Kim. 2002. Evolution of endemic vascular plants of Ulleungdo and Dokdo in Korean - floristic and cytotaxonomic characteristics of vascular flora of Dokdo. Korean J. PI. Taxon. 32(2): 143-158.   과학기술학회마을
26 Sun, B.-Y. and T. F. Stuessy. 1998. Preliminary observations on the evolution of endemic angiosperms of Ulleung Island, Korea. In Evolution and speciation of island plants. Stuessy, T. F., Ono, M. (eds). Cambridge: Cambridge University Press, 181-202.
27 Taberlet, P., L. Gielly, G. Pautou and J. Bouvert. 1991. Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Molecular Biology 17: 1105-1109.   DOI   ScienceOn
28 Yang, I. S. 1956. The flora of Ulreung Is. Research Review of Kyungpook National University 1: 245-274.
29 Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin and D. G. Higins. 1997. The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25(24): 4876-4882.   DOI