Molecular Identification of Zoysia japonica and Zoysia sinica (Zoysia Species) Based on ITS Sequence Analyses and CAPS |
Hong, Min-Ji
(Faculty of Biotechnology, Jeju National University)
Yang, Dae-Hwa (Subtropical Horticulture Research Institute, Jeju National University) Jeong, Ok-Cheol (Subtropical Horticulture Research Institute, Jeju National University) Kim, Yang-Ji (Faculty of Biotechnology, Jeju National University) Park, Mi-Young (Subtropical Horticulture Research Institute, Jeju National University) Kang, Hong-Gyu (Subtropical Horticulture Research Institute, Jeju National University) Sun, Hyeon-Jin (Subtropical Horticulture Research Institute, Jeju National University) Kwon, Yong-Ik (Subtropical Horticulture Research Institute, Jeju National University) Park, Shin-Young (Department of Clinical Pathology, Cheju Halla College) Yang, Paul (Department of Agronomy, Chungnam National University) Song, Pill-Soon (Subtropical Horticulture Research Institute, Jeju National University) Ko, Suk-Min (Omicsis. Inc. BVC, Korea Research Institute of Bioscience & Biotechnology) Lee, Hyo-Yeon (Faculty of Biotechnology, Jeju National University) |
1 | Murashige T, Skoog F (1962) A revised medium for rapid growth and bio assays with tobacco tissue cultures. Physiologia Plantarum 15:473-497 DOI |
2 | Yu TY, Yeam DY, Kim YJ, Kim SJ (1974) Morphological studies on Korean lawn grasses (Zoysia spp). J Kor Soc Hortic Sci 15(1):79-91 |
3 | Konieczny A , Ausubel FM (1993) A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCR-based markers. Plant J 4:403-410 DOI |
4 | Gehrig H, Gaussmann O, Marx H, Schwarzott D, Kluge M (2001) Molecular phylogeny of the genus Kalanchoe (Crassulaceae) inferred from nucleotide sequences of the ITS-1 and ITS-2 regions. Plant Sci 160:827-835 DOI |
5 | Thompson JD, Higgins DG, Gibsom TJ (1994) Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucl Acids Res 22:4673-4680 DOI |
6 | Wu L, Lin H (1994) Identifying buffalograss [Buchloe dactyloides (Nutt) Engelm] cultivar breeding lines using random amplified polymorphic DNA (RAPD) markers. J Am Soc Hortic Sci 119:126-130 |
7 | Yang GM, Ahn BJ, Choi JS (1995) Identification of native zoysiagrasses (Zoysia spp) using morphological characteristics and esterase isozymes. J Kor Soc Hortic Sci 36(2):240-247 |
8 | Kubik C, Sawkins M, Meyer WA, Gaut BS (2001) Genetic diversity in seven perennial Ryegrass (Lolium perenne L) cultivars based on SSR markers. Crop Sci 41:1565-1572 DOI |
9 | Renganayaki K, Read JC, Fritz AK (2001) Genetic diversity among Texas bluegrass genotypes (Poa arachnifera Torr) revealed by AFLP and RAPD markers. Theor Appl Genet 102:1037-1045 DOI |
10 | Hebert PDN, Cywinska A, Ball SL, Waard JR de (2003) Biological identifications through DNA barcodes. Proc R Soc Lond B 270:313-321 DOI |
11 | Kunihisa M, Fukino N, Matsumoto S (2003) Development of cleavage amplified polymorphic sequence (CAPS) markers for identification of strawberry cultivars. Euphytica 134:209-215 DOI |
12 | Budak H, Shearman RC, Parmaksiz I, Gaussoin RE, Riordan TP, Dweikat I (2004) Molecular characterization of buffalograss germplasm using sequence-related amplified polymorphism markers. Theor Appl Genet 108:328-334 DOI |
13 | Kress WJ, Wurdack KJ, Zimmer EA, Weigt LA, Janzen DH (2005) Use of DNA barcodes to identify flowering plants. Proc Natl Acad Sci USA 102:8369-8374 DOI |
14 | Han HS, Kim DY, Lee KY, Park WG, Cho IK, Jung JS (2006) Comparative Analysis of Acanthopanax senticosus Harms from Korea, China and Russia Based on the ITS Sequences of Nuclear Ribosomal DNA. Korean J Plant Res 19:54-58 |
15 | Baigalmaa J, Kim MK, Noh JH, Hua S, Yang DC (2009) Phylogenetic analysis of Schizonepeta Spike on the basis of DNA sequences. K J Med Crop Sci 17:46-53 |
16 | Li RF, Wei JH, Wang HZ, He J, Sun ZY (2006) Development of highly regenerable callus lines and Agrobacterium -mediated transformation of Chinese lawngrass (Zoysia sinica Hance) with a cold inducible transcription factor, CBF1. Plant Cell Tiss Org 85:297-305 DOI |
17 | Choi DK, Yang GM, Choi JS (2008) Flowering periods, genetic characteristics, and cross-pollination rate of Zoysia spp In natural openpollination. Kor Turfgrass Sci 22:13-24 |
18 | Kress WJ, Erickson DL (2008) DNA barcodes: genes, genomics, and bioinformatics. Proc Natl Acad Sci USA 105:2761-2762 DOI |
19 | Ahn SY, Cho KS, Yoo KO, Suh JT (2010) Phylogenetic relationship of Ligularia species based on RAPD and ITS sequence analysis. Korean J Hortic Sci Technol 28:638-647 |
20 | Gao T, Yao H, Song J, Liu C, Zhu Y, MA X, Pang X, Xu H, Chen S (2010) Identification of medicinal plants in the family Fabaceae using a potential DNA barcode ITS 2. J Ethnopharmacol 130:116-121 DOI |
21 | Kim HK, Lee SJ (2010) Turfgrass and golf course. Sunjinmunhwa Publishing 99-180 |
22 | Koch H (2010) Combining morphology and DNA barcoding resolves the taxonomy of Western Malagasy Liotrigona Moure, 1961. African Invertebrates 51:413-421 DOI |
23 | Peterson PM, Romaschenko K, Johnson G (2010) A classification of the Chloridoideae (Poaceae) based on multi-gene phylogenetic trees. Mol Phylogenet Evol 55:580-598 DOI |
24 | China Plant BOL Group (2011) Comparative analysis of a large dataset indicates that internal transcribed spacer(ITS) should be incorporated into the core barcode for seed plants. Proc Natl Acad Sci USA 108:19641-19646 DOI |
25 | Rodionov AV, Nosov NN, Kim ES, Machs EM, Punina EO, Probatova NS (2010) The origin of polyploidy genomes of bluegrasses Poa L and gene flow between Northern Pacific and sub-Antarctic islands. Genetika 4612:1598-1608 |
26 | Sun HJ, Song IJ, Bae TW, Lee HY (2010) Recent development in biotechnological improvement of Zoysia japonica Steud. J Plant Biotechnol 37:400-407 DOI |
27 | Yao H, Song J, Liu C, Luo K, Han J, Li Y, Pang X, Xu H, Zhu Y, Xiao P, Chen S (2010) Use of ITS2 region as the universal DNA barcode for plants and animals. PLoS ONE 5:e13102 DOI |
28 | CBOL Plant Working Group (2009) A DNA barcode for land plants. Proc Natl Acad Sci USA 106:12794-12797 DOI |
29 | Hong SY, Cho KS, Yoo KO (2012) Phylogenetic analysis of Korean native Aster plants based on internal transcribed spacer (ITS) sequence. Korean J Hortic Sci Technol 30:178-184 DOI |
30 | Hyun YH, Choi BJ, Kim YJ, Joo YK (2012) Analysis of Research Trend on Zoysiagrass (Zoysia spp). Asian J Turfgrass Sci 26:89-95 |
31 | Kim HJ, Lee HR, Hyun JY, Won DC, Hong DO, Harn CH (2012) CAPS Marker Linked to Tomato Hypocotyl Pigmentation. Korean J Hortic Sci Technol 30:56-63 DOI |
32 | Chung SJ, Park SJ, Choi YI, Kim IK, Lee KY, Kim HJ, Lee GJ (2013) SCAR markers were developed to identify zoysiagrass mutants exhibiting fine leaf characteristics. CNU J of Agri Sci 40:115-121 |
33 | Kim SJ, Cho KS, Yoo KO, Lim KB, Hwang YJ, Chang DC, Kim KS (2015) Sequence analysis of the internal transcribed spacer (ITS) region of the nuclear ribosomal DNA (nrDNA) Chrysanthemum species in Korea. Hortic Environ Biotechnol 56:44-53 DOI |
34 | Moon BC, Lee YM, Ji Y, Choi G, Chun JM, Kim HK (2013) Molecular Authentication and Phylogenetic Analysis of Plant Species for Breeae and Cirsii Herba based on DNA barcodes. Kor J Herbology 28:75-84 |
35 | Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: Molecular evolutionary genetics analysis version 60. Mol Biol Evol 30:2725-2729 DOI |