Soil Chemical Property and Microbial Community under Organic and Conventional Radish Farming Systems |
Kang, Ho-Jun
(제주특별자치도농업기술원 친환경연구과)
Yang, Sung-Nyun (제주특별자치도농업기술원 친환경연구과) Song, Kwan-Cheol (제주특별자치도농업기술원 친환경연구과) Cho, Young-Yuen (제주특별자치도농업기술원 친환경연구과) Kim, Yu-Kyoung (제주특별자치도농업기술원 친환경연구과) |
1 | Li, P., L. Chen, J. Zhang, J. Yin, and S. Huang. 2017. Bacterial community structure after long-tem organic and inorganic fertilization reveals important associations between soil nutrients and specific Taxa involved in nutrient transformations. Front Microbiol. 8: 187. doi: 10.3389/fmicb.2017.00187. |
2 | Liao, J. L., Y. Liang, and D. Huang. 2018. Organic farming improves soil microbial abundance and diversity under greenhouse condition: A case study in Shanghai (Eastern China). Sustainability 10: 3825. doi: 10.3390/su10103825. DOI |
3 | Lori, M., S. Symnaczik, P. Mader, G. D. Deyn, and A. Gattinger. 2017. Organic farming enhances soil microbial abundance and activity-A meta-analysis and meta-regression. PLoS ONE 12(7): e0180442. DOI |
4 | Lupatini, M., G. W. Korthals, M. de Hollander, T. K. S. Janssens, and E. Kuramae. 2017. Soil Microbiome is more heterogeneous in organic than in conventional farming system. Front. Microbiol. 7: 2064. doi: 10.3389fmicb.2016.02064. |
5 | Mader, P. A. Fliessbach, D. Dubois, L. Gunst, P. Fried, and U. Niggli. 2002. Soil fertility and biodiversity in organic farming. Science. 296: 1694-1697. doi: 10.1126/science.1071148. DOI |
6 | Lamberti, P. W., A. P. Mahtey, A. Borras, M. Casas, and A. Plastino. 2008. On the metric character of the quantum Jensen-Shannon divergence. Phys. Res. A, 77(5): 052311. |
7 | RDA. 2012. Standard analysis method of agricultural scientific technique (5th edition). Suwon-si, Korea. |
8 | Schlesner, H. 1994. The development of media suitable for the microorganisms morphologically resembling Planctomyces spp., Pirellula spp., and other planctomycetales from various aquatic habitats using dilute media. Syst. Appl. Microbiol. 17: 135-145. DOI |
9 | Segata, N., J. Izard, L. Waldron, D. Gevers, L. Miropolsky, W. S. Garrett, and C. Huttenhower. 2011. Metagenomic biomarker discovery and explanation. enome Biology 12:R60. http://genomebiology.com/2011/11/6/R60. DOI |
10 | Sivan, A., L. Corrales, N. Hubert, J. B. Williams, K. Aquino-Michaels, Z. M. Earley, F. W. Benyamin, Y. M. lei, B. Jabri, M. L. Alegre, E. B. Chang, and T. F. Gajewski. 2015. Commensal Bifidobacterium promotes antitumor immunity and facilitates anti-PD-L1 efficacy. Science. Nov. 27; 350(6264): 1084-9. |
11 | Song, K. C., S. B. Lee, D. B. Lee, B. K. Huyn, and Y. K. Sonn. 2014. Taxonomical classification of Korean soils. National Academy of Agricultural Science. Suwon-si, Korea. |
12 | Sugiyama, A. and J. M. Vivanco. 2010. Pyrosequencing Assesment of soil microbial communities in organic and conventional potato farms. Plant Dis. 94: 1329-1335. DOI |
13 | Tilman, D., K. G. Cassman, P. A. Matson, R. Naylor, and S. Polasky. 2002. Agricultural sustainability and intensive production practices. Nature. 418: 671-677. DOI |
14 | Ugolini, F. C. and R. A. Dahlgren. 2002. Soil development in volcanic ash. Glob. Environ. Res. 6(2): 69-81. |
15 | Vance, E. D., P. C. Brookes, and D. S. Jenkinson. 1987. An extraction method for measuring soil micobial biomass C. Soil Biol. Biochem. 19: 703-707. DOI |
16 | Wang, S. Z. Li, and G. Fan. 2012. Soil quality and microbes in organic and conventional farming systems. African J. of Micro. Research. 6(24): 5077-5085. |
17 | Wang, W., H. Wang, Y. Feng, L. Wang, X. Xiao, Y. Xi, X. Luo, R. Sun, X. Ye, Y. Huang, Z. Zhang, and Z. Cui. 2016. Consistent responses of the microbial community structure to organic farming along the middle and lower reaches of the Yangtzw River. Sci. Rep. 6: 35046. DOI |
18 | Whalen, J. K., C. Chang, G. W. Clayton, and P. Carefoot. 2000. Cattle manure amendments can increase the pH of acid soils. Soil Sci. Am. J. 64: 962-966. DOI |
19 | Wang, X., C. E. Sharp, G. M. Jones, S. E. Grasby, A. L. Brady, and P. F. Dunfield. 2015. Stable-Isotope probing identifies uncultured planctomycetes as primary degraders of a complex heteropolysaccharide in soil. Appl. Environ. Microb. 81: 4607-4615. DOI |
20 | Wepking, C., B. Avera, B. Badgley, J. E. Barrett, J. Franklin, K. F. Knowlton, P. P. Ray, C. Smitherman, and M. S. Strickland. 2017. Exposure to dairy manure leads to greater antibiotic resistance and increased mass-respiration in soil microbial communities. Proc. Biol. Sci. 284, 20162233. doi: 10.1098/rspb.2016.2233. |
21 | Wieczorek, A., S. Hetz, and S. Kolb. 2014. Microbial responses to chitin and chitosan in oxic and anoxic agricultural soil slurries. Biogeosciences. 11: 3339-3352. DOI |
22 | Xiong, W., Z. Li, H. Liu, C. Xue, R. Zhang, H. Wu, R. Li, and Q. Shen. 2015. The effect of long-term continuous cropping of Black Pepper on soil bacterial communities as determined by 454 pyrosequencing. PLoS ONE. 10. e0136946. DOI |
23 | Beilen, N. V. 2016. Effects of conventional and organic agricultural techniques on soil ecology. The center for development and strategy. 2016(1). |
24 | Adams, J. 2011. Altitudinal, land use and substrate variation in determining soil prokaryotic community on Jeju Island, Korea. Research report of Seoul National University. http://www.ndsl.kr/ndsl/search/detail/report/ |
25 | Armalyte, J., J. Skerniskyte, E. Bakiene, R. Krasauskas, R. Siugzdinient, V. Kareiviene, S. Kerziene, I. Klimiene, and E. Suziedeliene. 2019. Microbial diversity and antimicrobial resistance profile in microbiota from soils of conventional and organic farming systems. Frontiers in Microbiol. 10(892). |
26 | Bacon, C. W., E. R. Palencia, and D. M. Hinton. 2015. Abiotic and biotic plant stress tolerant and beneficial secondary metabolites produced by endophytic Bacillus species. Plant Micro. Sym.: 163-177. |
27 | Chao, A. and T. J. Shen. 2003. Nonparametric estimation of Shannon's index of diversity when there are unseen species in sample. Environmental and ecological statistics, 10(4): 429-443. doi: 10.1126/science.aac4255. Epub 2015 Nov 5. DOI |
28 | Bolger, A. M., M. Lohse, and B. Usadel. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30: 2114-2120. DOI |
29 | Buckley, D. H., and T. M. Schmidt. 2003. Diversity and dynamics of microbial communities in soils from agro-ecosystems. Environ. Microbiol. 5: 441-452. doi: 10.1046/j.1462-2920.2003.00404.x. DOI |
30 | Casida, L. E., D. A. Klein, and T. Santoro. 1964. Soil dehydrogenase activity. Soil Sci. 98: 371-376. DOI |
31 | Chaudhry, V., A. Rehman, A. Mishra, P. S. Chauhan, and C. S. Nautiyal. 2012. Change in bacterial community structure of agricultural land due to long-term organic and chemical amendments. Microb. Ecol. 64: 450-460. doi: 10.1007/s00248-012-0025-y. DOI |
32 | Deenik, J. 2006. Nitrogen mineralization potential in important agricultural soils of Hawai. Soil Crop Manage. 15: 1-5. |
33 | Gomiero, T., D. Pimentel, and M. G. Paoletti. 2011. Environmental impact of different agricultural management practices: Conventional vs. Organic agriculture. Crit. Rev. Plant. Sci. 30: 95-124. DOI |
34 | Hartmann, M., B. Frey, J. Mayer, P. Mader, and F. Widmer. 2015. Distinct soil microbial diversity under long-term organic and conventional farming. ISME J. 9: 1177-1194. doi: 10.1038/ismej.2014.210. DOI |
35 | Joa, J. H., S. G. Han, H. Y. Won, H. C. Lim, H. N. Hyun, and J. S. Suh. 2009. Effect of different fertilization management practices on soil microbial activities and community structure in volcanic ash citrus orchard soil. Kor. J. of Soil Sci. Fer. 42(3): 222-229. |
36 | Joa, J. H., K. H. Moon, K. S. Choi, S. C. Kim, and S. W. Koh. 2013. Soil dehydrogenase activity and microbial biomass C in croplands of Jeju Province. Kor. J. of Soil Sci. Fer. 46(2): 122-128. DOI |