Characteristics of the Microbial Community Responding to the Vertical Distribution of TPH Concentrations in the Petroleum-Contaminated Site |
Song, Soo Min
(Groundwater Environment Research Center, Climate Change Response Division, Korea Institute of Geoscience and Mineral Resources (KIGAM))
Moon, Hee Sun (Groundwater Environment Research Center, Climate Change Response Division, Korea Institute of Geoscience and Mineral Resources (KIGAM)) Han, Ji Yeon (Hanwool Life Science Ltd.) Shin, Jehyun (Groundwater Environment Research Center, Climate Change Response Division, Korea Institute of Geoscience and Mineral Resources (KIGAM)) Jeong, Seung Ho (Groundwater Environment Research Center, Climate Change Response Division, Korea Institute of Geoscience and Mineral Resources (KIGAM)) Jeong, Chan-Duck (Future Rural Research Office, Rural Research Institute, Korea Rural Community Corporation) Cho, Sunghyen (National Instrumentation Center for Environmental Management (NICEM), Seoul National University) |
1 | Adams, R.H., Ojeda-Castillo, V., Guzman-Osorio, F. J., Alvarez-Coronel, G., and Dominguez-Rodriguez, V.I., 2020, Human health risks from fish consumption following a catastrophic gas oil spill in the Chiquito River, Veracruz, Mexico, Environ. Monit. Assess., 192(12), 1-15. DOI |
2 | Barker, J.P., Patrick, G.C., and Major, D., 1987, Natural attenuation of aromatic hydrocarbons in a shallow sand aquifer, Ground Water Monit. Remediat., 7(1), 64-71. |
3 | Chaudhary, D.K., Bajagain, R., Jeong, S.W., and Kim, J., 2021, Insights into the biodegradation of diesel oil and changes in bacterial communities in diesel-contaminated soil as a consequence of various soil amendments, Chemosphere, 285, 131416. DOI |
4 | Lopez-Echartea, E., Strejcek, M., Mukherjee, S., Uhlik, O., and Yrjala, K., 2020, Bacterial succession in oil-contaminated soil under phytoremediation with poplars, Chemosphere, 243, 125242. DOI |
5 | Han, J.S., Kim, C.S., and Han, G.S., 2008, Pollution control & remediation of contaminated groundwater. J. Korean Geo Environ. Soc., 9(3), 5-21. |
6 | Edgar, R.C., 2010, Search and clustering orders of magnitude faster than BLAST, Bioinform., 26(19), 2460-2461. DOI |
7 | Gray, N.D., Sherry, A., Grant, R.J., Rowan, A.K., Hubert, C.R.J., Callbeck, C.M., Aitken, C.M., Jones, D.M., Adams, J.J.,Larter, S.R., and Head, I.M., 2011, The quantitative significance of Syntrophaceae and syntrophic partnerships in methanogenic degradation of crude oil alkanes, Environ. Microbiol., 13(11), 2957-2975. DOI |
8 | Gutierrez, T., Singleton, D.R., Berry, D., Yang, T., Aitken, M.D., and Teske, A., 2013, Hydrocarbon-degrading bacteria enriched by the deepwater horizon oil spill identified by cultivation and DNA-SIP, ISME J., 7(11), 2091-2104. DOI |
9 | James, E.K., Gyaneshwar, P., Mathan, N., Barraquio, W.L., Reddy, P.M., Iannetta, P.P., Olivres, F.L., and Ladha, J.K., 2002, Infection and colonization of rice seedlings by the plant growthpromoting bacterium Herbaspirillum seropedicae Z67, Mol. Plant Microbe Interact., 15(9), 894-906. DOI |
10 | Ji, J.H., Zhou, L., Mbadinga, S.M., Irfan, M., Liu, Y.F., Pan, P., Qi, Z.Z., Chen, J., Liu, J.F., Yang, S.Z., Gu, J.D., and Mu, B.Z., 2020, Methanogenic biodegradation of C9 to C12 n-alkanes initiated by Smithella via fumarate addition mechanism. AMB Express, 10(1), 1-9. DOI |
11 | Jiao, S., Liu, Z., Lin, Y., Yang, J., Chen, W., and Wei, G., 2016, Bacterial communities in oil contaminated soils: biogeography and co-occurrence patterns, Soil Biol. Biochem., 98, 64-73. DOI |
12 | Kim, J.S., 2010, Findings of microbial community structure and dominant species in soils near army bases and gas stations, Environ. Eng., 32(3), 227-233. |
13 | Li, D.C., Xu, W.F., Mu, Y., Yu, H.Q., Jiang, H., and Crittenden, J.C., 2018, Remediation of petroleum-contaminated soil and simultaneous recovery of oil by fast pyrolysis, Environ. Sci. Technol., 52(9), 5330-5338. DOI |
14 | Li, Q., You, P., Hu, Q., Leng, B., Wang, J., Chen, J., Wan, S., Wang, B., Yuan, C., Zhou, R., and Ouyang, K., 2020a, Effects of co-contamination of heavy metals and total petroleum hydrocarbons on soil bacterial community and function network reconstitution, Ecotoxicol. Environ. Saf., 204, 111083. DOI |
15 | Kim, J.Y. and Cho, K.S., 2006, Bioremediation of oil-contaminated soil using Rhizobacteria and plants, Microbiol. Biotechnol. Lett., 34(3), 185-195. |
16 | Lai, C.C., Huang, Y.C., Wei, Y.H., and Chang, J.S., 2009, Biosurfactant-enhanced removal of total petroleum hydrocarbons from contaminated soil, J. Hazard. Mater., 167(1-3), 609-614. DOI |
17 | Lee, G.B. and Chang, Y.Y., 2019, Treatability study on the remediation groundwater contaminated by TPH Cr6+: lab-scale experiment, J. Environ. Impact Assess., 28(3), 332-345. DOI |
18 | Lee, J. and Park, K., 2008, Microbial community in the TPH-contaminated aquifer for hot air sparging using terminal-restriction fragment length polymorphism, J. Environ. Impact Assess., 24(1), 19-29. |
19 | Li, W., Zhang, Y., Mao, W., Wang, C., and Yin, S., 2020b., Functional potential differences between Firmicutes and Proteobacteria in response to manure amendment in a reclaimed soil, Can. J. Microbiol., 66(12), 689-697. DOI |
20 | Yergeau, E., Sanschagrin, S., Beaumier, D., and Greer, C.W., 2012, Metagenomic analysis of the bioremediation of dieselcontaminated Canadian high arctic soils, PloS One, 7(1), e30058. DOI |
21 | Zheng, X., Ding, H., Xu, X., Liang, B., Liu, X., Zhao, D., and Sun, L., 2021, In situ phytoremediation of polycyclic aromatic hydrocarbon-contaminated agricultural greenhouse soil using celery, Environ. Technol., 42(21), 3329-3337. DOI |
22 | NIER (National Institute of Environmental Research), 2017, Soil pollution process test standards (National Institute of Environmental Research Notice No. 2017-22, Aug. 11th, 2017 enacted). |
23 | Obuekwe, C.O., Al-Jadi, Z.K., and Al-Saleh, E.S., 2009, Hydrocarbon degradation in relation to cell-surface hydrophobicity among bacterial hydrocarbon degraders from petroleum-contaminated Kuwait desert environment, Int. Biodeterior. Biodegrad., 63(3), 273-279. DOI |
24 | Park M.H., and Lee, M.H., 2012, TPH removal of the biodegradation process using 4 indigenous microorganisms for the diesel contaminated soil in a military camp, J. Soil Groundw. Environ., 17(3), 49-58. DOI |
25 | Toth, C.R. and Gieg, L.M., 2018, Time course-dependent methanogenic crude oil biodegradation: dynamics of fumarate addition metabolites, biodegradative genes, and microbial community composition, Front. Microbiol., 8, 2610. DOI |
26 | Wang, S.Y., Kuo, Y.C., Hong, A., Chang, Y.M., and Kao, C.M., 2016, Bioremediation of diesel and lubricant oil-contaminated soils using enhanced landfarming system, Chemosphere, 164, 558-567. DOI |
27 | Sutton, N.B., Maphosa, F., Morillo, J.A., Abu Al-Soud, W., Langenhoff, A.A., Grotenhuis, T., Rijnaarts, H.H., and Smidt, H., 2013, Impact of long-term diesel contamination on soil microbial community structure, Appl. Environ. Microbiol., 79(2), 619-630. DOI |
28 | Prenafeta-Boldu, F.X., Vervoort, J., Grotenhuis, J.T. C., and van Groenestijn, J.W., 2002, Substrate interactions during the biodegradation of benzene, toluene, ethylbenzene, and xylene (BTEX) hydrocarbons by the fungus Cladophialophora sp. strain T1, Appl. Environ. Microbiol., 68(6), 2660-2665. DOI |
29 | Siles, J.A. and Margesin, R., 2018, Insights into microbial communities mediating the bioremediation of hydrocarbon-contaminated soil from an alpine former military site, Appl. Microbiol. Biotechnol., 102(10), 4409-4421. DOI |