Browse > Article

Expressed Sequence Tags of Trichinella spiralis Muscle Stage Larvae  

Park, Hae-Kyung (Department of Internal Medicine, School of Medicine, Pusan National University)
Chang, Seong-Won (Department of Parasitology, School of Medicine, Pusan National University)
Kang, Se-Won (Department of Parasitology and Malariology, PICR, College of Medicine and Frontier Inje Research for Science and Technology, Inje University)
Cho, Min-Kyoung (Department of Parasitology, School of Medicine, Pusan National University)
Choi, Sun-Hee (Department of Parasitology, School of Medicine, Pusan National University)
Hong, Yeon-Chul (Department of Parasitology, School of Medicine, Kyungpook National University)
Lee, Yong-Seok (Department of Parasitology and Malariology, PICR, College of Medicine and Frontier Inje Research for Science and Technology, Inje University)
Jeong, Hae-Jin (Department of Parasitology, School of Medicine, Pusan National University)
Yu, Hak-Sun (Department of Parasitology, School of Medicine, Pusan National University)
Publication Information
Parasites, Hosts and Diseases / v.46, no.2, 2008 , pp. 59-63 More about this Journal
Abstract
In order to obtain greater insight into the relevant genomic expression patterns of Trichinella spiralis, 992 expressed sequence tags (ESTs) were collected from a cDNA library of T. spiralis muscle stage larvae and assembled into 60 clusters and 385 singletons. Of them, 445 (44.7%) ESTs were annotated to their homologous genes, and small fractions were matched to known genes of nematodes. The annotated ESTs were classified into 25 eukaryotic orthologous groups (KOG). Cytochrome C oxidase (34 clones) was found to be most frequent species.
Keywords
Trichinella spiralis; Expressed sequence tags; muscle stage larva; eukaryotic orthologous groups (KOG);
Citations & Related Records

Times Cited By Web Of Science : 2  (Related Records In Web of Science)
Times Cited By SCOPUS : 2
연도 인용수 순위
1 Campbell WC. Trichinella and trichinosis. New York, USA. Plenum Press. 1983.
2 Wolfsberg TG, Landsman D. A comparison of expressed sequence tags (ESTs) to human genomic sequences. Nucleic Acids Res 1997; 25: 1626-1632.   DOI
3 de Koning AP, Tartar A, Boucias DG, Keeling PJ. Expressed sequence tag (EST) survey of the highly adapted green algal parasite, Helicosporidium. Protist 2005; 156: 181-190.   DOI   ScienceOn
4 Ramirez M, Graham MA, Blanco-Lopez L, Silvente S, Medrano- Soto A, Blair MW, Hernandez G, Vance CP, Lara M. Sequencing and analysis of common bean ESTs. Building a foundation for functional genomics. Plant Physiol 2005; 137: 1211-1227.   DOI   ScienceOn
5 Akao T, Sano M, Yamada O, Akeno T, Fujii K, Goto K, Ohashi- Kunihiro S, Takase K, Yasukawa-Watanabe M, Yamaguchi K, Kurihara Y, Maruyama J, Juvvadi PR, Tanaka A, Hata Y, Koyama Y, Yamaguchi S, Kitamoto N, Gomi K, Abe K, Takeuchi M, Kobayashi T, Horiuchi H, Kitamoto K, Kashiwagi Y, Machida M, Akita O. Analysis of expressed sequence tags from the fungus Aspergillus oryzae cultured under different conditions. DNA Res 2007; 14: 47-57.   DOI
6 Schwartz EF, Diego-Garcia E, Rodriguez de la Vega RC, Possani LD. Transcriptome analysis of the venom gland of the Mexican scorpion Hadrurus gertschi (Arachnida: Scorpiones). BMC genomics 2007; 8: 119.   DOI   ScienceOn
7 Pertea G, Huang X, Liang F, Antonescu V, Sultana R, Karamycheva S, Lee Y, White J, Cheung F, Parvizi B, Tsai J, Quackenbush J. TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets. Bioinformatics 2003; 19: 651-652.   DOI   ScienceOn
8 Moczon T, Wranicz M. Trichinella spiralis: proteinases in the larvae. Parasitol Res 1999; 85: 47-58.   DOI
9 Pozio E, Darwin Murrell K. Systematics and epidemiology of Trichinella. Adv Parasitol 2006; 63: 367-439.   DOI   ScienceOn
10 Cap\ VA, Despommier DD, Polvere RI. Trichinella spiralis: vascular endothelial growth factor is up-regulated within the nurse cell during the early phase of its formation. J Parasitol 1998; 84: 209-214.   DOI   ScienceOn
11 Arita M, Suematsu T, Osanai A, Inaba T, Kamiya H, Kita K, Sisido M, Watanabe Y, Ohtsuki T. An evolutionary intermediate state of mitochondrial translation systems found in Trichinella species of parasitic nematodes: co-evolution of tRNA and EF-Tu. Nucleic Acids Res 2006; 34: 5291-5299.   DOI   ScienceOn
12 Ohtsuki T, Sato A, Watanabe Y, Watanabe K. A unique serine-specific elongation factor Tu found in nematode mitochondria. Nat Struct Biol 2002; 9: 669-673.   DOI   ScienceOn
13 Capaldi RA. Structure and assembly of cytochrome c oxidase. Arch Biochem Biophys 1990; 280: 252-262.   DOI   ScienceOn
14 Appleton JA, Romaris F. A pivotal role for glycans at the interface between Trichinella spiralis and its host. Vet Parasitol 2001; 101: 249-260.   DOI   ScienceOn
15 Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin EV, Krylov DM, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Smirnov S, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA. The COG database: an updated version includes eukaryotes. BMC Bioinformatics 2003; 4: 41.   DOI   ScienceOn
16 Michel H, Behr J, Harrenga A, Kannt A. Cytochrome c oxidase: structure and spectroscopy. Annu Rev Biophys Biomol Struct 1998; 27: 329-356.   DOI   ScienceOn
17 Yu HS, Park SK, Lee KH, Lee SJ, Choi SH, Ock MS, Jeong HJ. Anisakis simplex: analysis of expressed sequence tags (ESTs) of third-stage larva. Exp Parasitol 2007; 117: 51-56.   DOI   ScienceOn
18 Hudson DF, Morrison C, Ruchaud S, Earnshaw WC. Reverse genetics of essential genes in tissue-culture cells: 'dead cells talking'. Trends Cell Biol 2002; 12: 281-287.   DOI   ScienceOn
19 Katz M, Despommier DD, Gwadz RW. Parasitic Diseases. 2nd ed. New York, USA. Springer-Verlag. 1989.
20 Altschul SF, Lipman DJ. Protein database searches for multiple alignments. Proc Natl Acad Sci USA 1990; 87: 5509-5513.   DOI
21 Wakelin D, Lloyd M. Immunity to primary and challenge infections of Trichinella spiralis in mice: a re-examination of conventional parameters. Parasitology 1976; 72: 173-182.   DOI
22 Trap C, Fu B, Le Guerhier F, Liu M, Le Rhun D, Romand T, Perret C, Blaga R, Boireau P. Cloning and analysis of a cDNA encoding a putative serine protease comprising two trypsin-like domains of Trichinella spiralis. Parasitol Res 2006; 98: 288-294.   DOI   ScienceOn
23 Lavrov DV, Brown WM. Trichinella spiralis mtDNA: a nematode mitochondrial genome that encodes a putative ATP8 and normally structured tRNAS and has a gene arrangement relatable to those of coelomate metazoans. Genetics 2001; 157: 621-637.   PUBMED
24 Tetteh KK, Loukas A, Tripp C, Maizels RM. Identification of abundantly expressed novel and conserved genes from the infective larval stage of Toxocara canis by an expressed sequence tag strategy. Infect Immun 1999; 67: 4771-4779.   PUBMED
25 Ng ST, Sanusi Jangi M, Shirley MW, Tomley FM, Wan KL. Comparative EST analyses provide insights into gene expression in two asexual developmental stages of Eimeria tenella. Exp Parasitol 2002; 101: 168-173.   DOI   ScienceOn
26 Blaxter M, Daub J, Guiliano D, Parkinson J, Whitton C, Filarial Genome Project. Pathogen genomes and human health. The Brugia malayi genome project: expressed sequence tags and gene discovery. Trans R Soc Trop Med Hyg 2002; 96: 7-17.   DOI   ScienceOn
27 Altschul MS. The circumcision controversy. Am Fam Physician 1990; 41: 817-820.   PUBMED
28 Clausen MR, Meyer CN, Krantz T, Moser C, Gomme G, Kayser L, Albrectsen J, Kapel CM, Bygbjerg IC. Trichinella infection and clinical disease. QJM 1996; 89: 631-636.   DOI   PUBMED   ScienceOn
29 Thompson FJ, Mitreva M, Barker GL, Martin J, Waterston RH, Mc- Carter JP, Viney ME. An expressed sequence tag analysis of the lifecycle of the parasitic nematode Strongyloides ratti. Mol Biochem Parasitol 2005; 142: 32-46.   DOI   ScienceOn
30 Maizels RM, Tetteh KK, Loukas A. Toxocara canis: genes expressed by the arrested infective larval stage of a parasitic nematode. Int J Parasitol 2000; 30: 495-508.   DOI   ScienceOn
31 Ewing B, Hillier L, Wendl MC, Green P. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 1998; 8: 175-185.   DOI   PUBMED
32 Mitreva M, Jasmer DP. Biology and genome of Trichinella spiralis. WormBook 2006; 1-21.
33 Ewing B, Green P. Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res 1998; 8: 186-194.   DOI   PUBMED
34 Serruto D, Rappuoli R. Post-genomic vaccine development. FEBS lett 2006; 580: 2985-2992.   DOI   ScienceOn
35 Mahida YR. Host-parasite interactions in rodent nematode infections. J Helminthol 2003; 77: 125-131.   DOI   ScienceOn