Mitochondrial D-Loop Variations for Discrimination of Commercial Korean Native Chicken Populations |
Sultana, Hasina
(Department of Animal Science and Biotechnology, Chungnam National University)
Hoque, Md. Rashedul (Department of Animal Science and Biotechnology, Chungnam National University) Seo, Dong-Won (Department of Animal Science and Biotechnology, Chungnam National University) Kang, Bo-Seok (Poultry Science Division, National Institute of Animal Science, RDA) Heo, Kang-Nyeong (Poultry Science Division, National Institute of Animal Science, RDA) Jo, Cheorun (Department of Animal Science and Biotechnology, Chungnam National University) Lee, Jun-Heon (Department of Animal Science and Biotechnology, Chungnam National University) |
1 | Cho CY, Lee PY, Ko YG, Kim HK, Park MN, Yeon SH 2011 Multiple maternal origins of Korean native chicken based on the mtDNA D-loop variation. Korean J Poult Sci 38(1):5-12. 과학기술학회마을 DOI ScienceOn |
2 | Coble MD, Just RS, O'Callaghan JE, Letmanyi IH, Peterson CT, Irwin JA, Parsons TJ 2004 Single nucleotide polymorphisms over the entire mtDNA genome that increase the power of forensic testing in Caucasians. Int J Legal Med 118:137-146. DOI |
3 | Fumihito A, Miyake T, Sumi S, Takada M, Ohno S, Kondo N 1994 One subspecies of the red jungle fowl (Gallus gallus gallus) suffices as the matriarchic ancestor of all domestic breeds. Proc Natl Acad Sci USA 91:12505-12509. DOI ScienceOn |
4 | Fumihito A, Miyake T, Takada M, Shingu R, Endo T, Gojobori T, Kondo N, Ohno S 1996 Monophyletic origin and unique dispersal patterns of domestic fowls. Proc Natl Acad Sci USA 93:6792-6795. DOI ScienceOn |
5 | Harpending HC, Batzer MA, Gurven M, Jorde LB, Rogers AR, Sherry ST 1998 Genetic traces of ancient demography. Proc Natl Acad Sci USA 95:1961-1967. DOI |
6 | Harumi T, Sano A, Minematsu T, Naito M 2011 Allele-specific PCR and sequencing of the mitochondrial D-loop region in four layer breeds. Anim Sci J 82(2):223-226. DOI ScienceOn |
7 | Hoque MR, Jung KC, Park BK, Choi KD, Lee JH 2009 Genetic variability of mtDNA D-loop region in Korean native chickens. Korean J Poult Sci 37(4):323-328. 과학기술학회마을 DOI ScienceOn |
8 | Hoque MR, Lee SH, Jung KC, Kang BS, Park MN, Lim HK, Choi KD, Lee JH 2011 Discrimination of Korean native chicken populations Using SNPs from mtDNA and MHC polymorphisms. Asian-Aust J Anim Sci 24(12):1637-1643. DOI ScienceOn |
9 | Lee YJ, Bhuiyan MSA, Chung HJ, Jung WY, Choi KD, Jang BG, Paek WK, Jeon JT, Park CS, Lee JH 2007 Mitochondrial DNA diversity of Korean Ogol chicken. Asian-Aust J Anim Sci 20(4):477-481. DOI |
10 | Miller SA, Dykes DD, Polesky HF 1988 A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Res 16(3):1215-1215. DOI ScienceOn |
11 | Moore WS, Defilippis VR 1997 The window of taxonomic resolution for phylogenies based on mitochondrial cytochrome b. In: Avian Molecular Evolution and Systematic (Ed. Mindell DP). Academic press, San Diego pp. 84-119. |
12 | Nijman IJ, Otsen M, Verkaar EL, de Ruijter C, Hanekamp E 2003 Hybridization of banteng (Bos javanicus) and zebu (Bos indicus) revealed by mitochondrial DNA, satellite DNA, AFLP and microsatellites. Heredity 90:10-16. DOI ScienceOn |
13 | Niu D, Fu Y, Luo J, Ruan H, Yu XP, Chen G, Zhang YP 2002 The origin and genetic diversity of Chinese native chicken breeds. Biochem Genet 40:163-174. DOI ScienceOn |
14 | Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S 2011 MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 10:1093. |
15 | Thompson JD, Higgins DG, Gibson TJ, Clustal W 1994 Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680. DOI ScienceOn |
16 | Vallone PM, Just RS, Coble MD, Butler JM, Parsons TJ 2004 A multiplex allele specific primer extension assay for forensically informative SNPs distributed throughout the mitochondrial genome. Int J Legal Med 118:147-157. DOI |
17 | Bandelt HJ, Forster P, Rohl A 1999 Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16: 37-48. DOI ScienceOn |
18 | Baker AJ, Marshall HD 1997 Mitochondrial control region sequences as tools for understanding evolution. In: Avian Molecular Evolution and Systematic (Ed. Mindell DP). Academic press, San Diego pp. 51-82. |
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