Cloning, Sequencing, and Expression of the Gene Encoding a Multidomain Endo--1,4-Xylanase from Paenibacillus curdlanolyticus B-6, and Characterization of the Recombinant Enzyme |
Waeonukul, Rattiya
(School of Bioresources and Technology, King Mongkut's University of Technology Thonburi)
Pason, Patthra (School of Bioresources and Technology, King Mongkut's University of Technology Thonburi) Kyu, Khin Lay (School of Bioresources and Technology, King Mongkut's University of Technology Thonburi) Sakka, Kazuo (Graduate School of Bioresources, Mie University) Kosug, Akihiko (Japan International Research Center for Agricultural Sciences) Mori, Yutaka (Japan International Research Center for Agricultural Sciences) Ratanakhanokchai, Khanok (School of Bioresources and Technology, King Mongkut's University of Technology Thonburi) |
1 | Ali, M. K., T. Kimura, K. Sakka, and K. Ohmiya. 2001. The multidomain xylanase Xyn10B as a cellulose-binding protein in Clostridium stercorarium. FEMS Microbiol. Lett. 198: 79-83 DOI ScienceOn |
2 | Ali, M. K., H. Hayashi, S. Karita, M. Goto, T. Kimura, K. Sakka, and K. Ohmiya. 2001. Importance of the carbohydrate-binding module of Clostridium stercorarium Xyn10B to xylan hydrolysis. Biosci. Biotechnol. Biochem. 65: 41-47 DOI ScienceOn |
3 | Charnock, S. J., D. N. Bolam, J. P. Turkenburg, H. J. Gilbert, L. M. A. Ferreira, G. J. Davies, and C. M. A. Fontes. 2000. The X6 "thermostabilizing” domains of xylanases are carbohydratebinding modules: Structure and biochemistry of the Clostridium thermocellum X6b domain. Biochemistry 39: 5013-5021 DOI ScienceOn |
4 | Gilbert, H. J. and G. P. Hazlewood. 1993. Bacterial cellulases and xylanases. J. Gen. Microbiol. 139: 187-194 DOI |
5 | Henrissat, B. and A. Bairoch. 1996. Updating the sequence-based classification of glycosyl hydrolases. Biochem. J. 316: 695-696 DOI PUBMED ScienceOn |
6 | Irwin, D., E. D. Jung, and D. B. Wilson. 1994. Characterization and sequence of a Thermomonospora fusca xylanase. Appl. Environ. Microbiol. 60: 763-770 PUBMED ScienceOn |
7 | Lee, Y.-E., S. E. Lowe, B. Henrissat, and J. G. Zeikus. 1993. Characterization of the active site and thermostability regions of endoxylanase from Thermoanaerobacterium saccharolyticum B6ARI. J. Bacteriol. 175: 5890-5898 DOI PUBMED |
8 | Ratanakhanokchai, K., K. L. Kyu, and M. Tanticharoen. 1999. Purification and properties of a xylan-binding endoxylanase from alkaliphilic Bacillus sp. strain K-1. Appl. Environ. Microbiol. 65: 694-697 PUBMED ScienceOn |
9 | Tsujibo, H., T. Ohtsuki, T. Iio, I. Yamazaki, K. Miyamoto, M. Sugiyama, and Y. Inamori. 1997. Cloning and sequence analysis of genes encoding xylanases and acetyl xylan esterase from Streptomyces thermoviolaceus OPC-520. Appl. Environ. Microbiol. 63: 661-664 PUBMED ScienceOn |
10 | Whistler, R. L. and E. L. Richard. 1970. Hemicellulose in the carbohydrates, pp. 447-469. In W. Pigman and D. Horton (eds.), The Carbohydrates: Chemistry and Biochemistry, 2nd Ed. Academic Press, New York, NY |
11 | Adelsberger, H., C. Hertel, E. Glawischnig, V. V. Zverlov, and W. H. Schwarz. 2004. Enzyme system of Clostridium stercorarium for hydrolysis of arabinoxylan: Reconstitution of the in vivo system from recombinant enzymes. Microbiology 150: 2257-2266 DOI ScienceOn |
12 | Devillard, E., C. Bera-Maillet, H. J. Flint, K. P. Scott, C. J. Newbold, R. J. Wallace, J. P. Jouany, and E. Forano. 2003. Characterization of XYN10B, a modular xylanase from the ruminal protozoan Polyplastron multivesiculatum, with a family 22 carbohydratebinding module that binds to cellulose. Biochem. J. 373: 495-503 DOI ScienceOn |
13 | Gill, J., J. E. Rixon, D. N. Bolam, S. McQueen-Mason, P. J. Simpson, M. P. Williamson, G. P. Hazlewood, and H. J. Gilbert. 1999. The type II and X cellulose-binding domains of Pseudomonas xylanase A potentiate catalytic activity against complex substrates by a common mechanism. Biochem. J. 342:473-480 DOI ScienceOn |
14 | Laemmli, U. K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227: 680-685 DOI PUBMED ScienceOn |
15 | Henrissat, B. and P. Coutinho. [Online] Glycosyl hydrolase families. Architecture et Fonction des Macromolules Biologiques, CNRS, Marseille, France. http://afmb.cnrs-mrs.fr/~pedro/CAZY/ghf.html |
16 | Nelson, N. 1944. A photometric adaptation of the Somogyi method for the determination of glucose. J. Biol. Chem. 153: 375-380 |
17 | Sun, J. L., K. Sakka, S. Karita, T. Kimura, and K. Ohmiya. 1998. Adsorption of Clostridium stercorarium xylanase A to insoluble xylan and the importance of the CBDs to xylan hydrolysis. J. Ferment. Bioeng. 85: 63-68 DOI ScienceOn |
18 | Lee, J.-H. and S. H. Choi. 2006. Xylanase production by Bacillus sp. A-6 isolated from rice bran. J. Microbiol. Biotechnol. 16:1856-1861 ScienceOn |
19 | Zemnukhova, L. A., S. V. Tomshich, V. A. Mamontova, N. A. Komandrova, G. A. Fedorishcheva, and V. I. Sergienko. 2004. Composition and properties of polysaccharides from rice husk. Russ. J. Appl. Chem. 77: 1883-1887 DOI ScienceOn |
20 | Kosugi, A., K. Murashima, Y. Tamaru, and R. H. Doi. 2002. Cellsurface anchoring role of N-terminal surface layer homology domains of Clostridium cellulovorans EngE. J. Bacteriol. 184:884-888 DOI ScienceOn |
21 | Black, G. W., J. E. Rixon, J. H. Clarke, G. P. Hazlewood, M. K. Theodorou, P. Morris, and H. J. Gilbert. 1996. Evidence that linker sequences and cellulose-binding domains enhance the activity of hemicellulases against complex substrates. Biochem. J. 319: 515-520 DOI PUBMED ScienceOn |
22 | Kubata, B. K., T. Suzuki, H. Horitsu, K. Kawai, and K. Takamizawa. 1994. Purification and characterization of Aeromonas caviae ME-1 xylanase V, which produces exclusively xylobiose from xylan. Appl. Environ. Microbiol. 60: 531-535 PUBMED ScienceOn |
23 | Heo, S., J. Kwak, H.-W. Oh, D.-S. Park, K. S. Bae, D. H. Shin, and H.-Y. Park. 2006. Characterization of an extracellular xylanase in Paenibacillus sp. HY-8 isolated from an herbivorous longicorn beetle. J. Microbiol. Biotechnol. 16: 1753-1759 ScienceOn |
24 | Lee, Y.-E., S. E. Lowe, and J. G. Zeikus. 1993. Gene cloning, sequencing, and biochemical characterization of endoxylanase from Thermoanaerobacterium saccharolyticum B6A-RI. Appl. Environ. Microbiol. 59: 3134-3137 PUBMED |
25 | Pason, P., G. H. Chon, K. Ratanakhanokchai, K. L. Kyu, O.-H. Jhee, J. Kang, et al. 2006. Selection of multienzyme complexproducing bacteria under aerobic cultivation. J. Microbiol. Biotechnol. 16: 1269-1275 ScienceOn |
26 | Meissner, K., D. Wassenberg, and W. Liebl. 2000. The thermostabilizing domain of the modular xylanase Xyn10A of Thermotoga maritima represents a novel type of binding domain with affinity for soluble xylan and mixed-linkage -1,3/-1,4-glucan. Mol. Microbiol. 36: 898-912 DOI ScienceOn |
27 | St. John, F. J., J. D. Rice, and J. F. Preston. 2006. Paenibacillus sp. strain JDR-2 and XynA1: A novel system for methylglucuronoxylan utilization. Appl. Environ. Microbiol. 72: 1496-1506 DOI ScienceOn |
28 | Mesnage, Stphane., T. Fontaine, Tm Mignot, M. Delepierre, Michle Mock, and Agns. Fouet. 2000. Bacterial SLH domain proteins are non-covalently anchored to the cell surface via a conserved mechanism involving wall polysaccharide pyruvylation. EMBO J. 19: 4473-4484 DOI ScienceOn |
29 | Boraston, A. B., A. L. Creagh, M. M. Alam, J. M. Kormos, P. Tomme, C. A. Haynes, R. A. J. Warren, and D. G. Kilburn. 2001. Binding specificity and thermodynamics of a family 9 carbohydratebinding module from Thermotoga maritima xylanase 10A Biochemistry 40: 6240-6247 DOI ScienceOn |
30 | Lee, H.-J., D.-J. Shin, N. C. Cho, H. O. Kim, S. Y. Shin, S. Y. Im, H. B. Lee, S. B. Chun, and S. Bai. 2000. Cloning, expression and nucleotide sequences of two xylanase genes from Paenibacillus sp. Biotechnol. Lett. 22: 387-392 DOI ScienceOn |
31 | Matuschek, M., K. Sahm, A. Zibat, and H. Bahl. 1996. Characterization of genes from Thermoanaerobacterium thermosulfurigenes EM1 that encode two glycosyl hydrolases with conserved S-layer-like domains. Mol. Gen. Genet. 252:493-496 PUBMED |
32 | Liu, S.-Y., F. C. Gherardini, M. Matuschek, H. Bahl, and J. Wiegel. 1996. Cloning, sequencing, and expression of the gene encoding a large S-layer-associated endoxylanase from Thermoanaerobacterium sp. strain JW/SL-YS 485 in Escherichia coli. J. Bacteriol. 178: 1539-1547 DOI PUBMED |
33 | Lupas, A., H. Enhgelhardt, J. Peters, U. Santarius, S. Volker, and W. Baumeister. 1994. Domain structure of the Acetogenium kivui surface layer revealed by electron crystallography and sequence analysis. J. Bacteriol. 176: 1224-1233 DOI PUBMED |
34 | Pason, P., K. L. Kyu, and K. Ratanakhanokchai. 2006. Paenibacillus curdlanolyticus strain B-6 xylanolytic-cellulolytic enzyme system that degrades insoluble polysaccharides. Appl. Environ. Microbiol. 72: 2483-2490 DOI ScienceOn |
35 | Millward-Sadler, S. J., D. M. Poole, B. Henrissat, G. P. Hazlewood, J. H. Clarke, and H. J. Gilbert. 1994. Evidence for a general role for high-affinity noncatalytic cellulose binding domains in microbial plant cell wall hydrolases. Mol. Microbiol. 11: 375-382 DOI ScienceOn |
36 | Ali, M. K., M. Fukumura, K. Sakano, S. Karita, T. Kimura, K. Sakka, and K. Ohmiya. 1999. Cloning, sequencing, and expression of the gene encoding the Clostridium stercorarium xylanase C in Escherichia coli. Biosci. Biotechnol. Biochem. 63: 1596-1604 DOI ScienceOn |
37 | Ito, Y., T. Tomita, N. Roy, A. Nakano, N. Sugawara-Tomita, S. Watanabe, N. Okai, N. Abe, and Y. Kamio. 2003. Cloning, expression, and cell surface localization of Paenibacillus sp. strain W-61 xylanase 5, a multidomain xylanase. Appl. Environ. Microbiol. 69: 6969-6978 DOI ScienceOn |
38 | Lowry, O. H., N. J. Rosebrough, A. L. Farr, and R. J. Randall. 1951. Protein measurement with the Folin phenol reagent. J. Biol. Chem. 193: 265-275 PUBMED |
39 | Ohmiya, K., K. Sakka, S. Karita, and T. Kimura. 1997. Structure of cellulases and their applications. Biotechnol. Genet. Eng. Rev. 14:365-414 DOI PUBMED ScienceOn |
40 | Okazaki, F., Y. Tamaru, S. Hashikawa, Y.-T. Li, and T. Araki. 2002. Novel carbohydrate-binding module of -1,3-xylanase from a marine bacterium, Alcaligenes sp. strain XY-234. J. Bacteriol. 184: 2399-2403 DOI ScienceOn |
41 | Moure, Andrs., P. Gulln, H. Domnguez, and J. C. Paraj. 2006. Advances in the manufacture, purification and applications of xylooligosaccharides as food additives and nutraceuticals. Proc. Biochem. 41: 1913-1923 DOI ScienceOn |
42 | Sunna, A., M. D. Gibbs, and P. L. Bergquist. 2000. A novel thermostable multidomain β-1,4-xylanase from Caldibacillus cellulovorans and effect of its xylan-binding domain on enzyme activity. Microbiology 146: 2947-2955 DOI PUBMED ScienceOn |
43 | Lee, T. H., P. O. Lim, and Y.-E. Lee. 2007. Cloning, characterization, and expression of xylanase A gene from Paenibacillus sp. DG-22 in Escherichia coli. J. Microbiol. Biotechnol. 17: 29-36 PUBMED ScienceOn |
44 | Morris, D. D., M. D. Gibbs, M. Ford, J. Thomas, and P. L. Bergquist. 1999. Family 10 and 11 xylanase genes from Caldicellulosiruptor sp. strain Rt69B.1. Extremophiles 3: 103-111 DOI ScienceOn |
45 | Feng, J. X., S. Karita, E. Fujino, T. Fujino, T. Kimura, K. Sakka, and K. Ohmiya. 2000. Cloning, sequencing, and expression of the gene encoding a cell-bound multi-domain xylanase from Clostridium josui, and characterization of the translated product. Biosci. Biotechnol. Biochem. 64: 2614-2624 DOI ScienceOn |
46 | Sunna, A. and G. Antranikian. 1997. Xylanolytic enzymes from fungi and bacteria. Crit. Rev. Biotechnol. 17: 39-67 DOI ScienceOn |
47 | Araki, R., M. K. Ali, M. Sakka, T. Kimura, K. Sakka, and K. Ohmiya. 2004. Essential role of the family-22 carbohydratebinding modules for β-1,3-1,4-glucanase activity of Clostridium stercorarium Xyn10B. FEBS Lett. 561: 155-158 DOI PUBMED ScienceOn |