Genetic diversity and population structure of indigenous chicken of Bangladesh using microsatellite markers |
Rashid, Muhammad Abdur
(Department of Animal Breeding and Genetics, Bangladesh Agricultural University)
Manjula, Prabuddha (Division of Animal and Dairy Science, Chungnam National University) Faruque, Shakila (Poultry Production Research Division, Bangladesh Livestock Research Institute) Bhuiyan, A.K. Fazlul Haque (Department of Animal Breeding and Genetics, Bangladesh Agricultural University) Seo, Dongwon (Division of Animal and Dairy Science, Chungnam National University) Alam, Jahangir (Animal Biotechnology Division, National Institute of Biotechnology) Lee, Jun Heon (Division of Animal and Dairy Science, Chungnam National University) Bhuiyan, Mohammad Shamsul Alam (Department of Animal Breeding and Genetics, Bangladesh Agricultural University) |
1 | Dorji N, Duangjinda M, Phasuk Y. Genetic characterization of Bhutanese native chickens based on an analysis of Red Jungle fowl (Gallus gallus gallus and Gallus gallus spadecieus), domestic Southeast Asian and commercial chicken lines (Gallus gallus domesticus). Genet Mol Biol 2012;35:603-9. https://doi.org/10.1590/S1415-47572012005000039 DOI |
2 | Faruque S, Islam MN, Bhuiyan AKFH. Ex situ improvement of indigenous chicken in Bangladesh. Trop Agric Res 2015; 26:596-607. http://doi.org/10.4038/tar.v26i4.8122 DOI |
3 | Pirany N, Romanov NMN, Ganpule SP, Govindaiah D, Doddananjat P. Microsatellites analysis of genetic biodiversity in Indian chicken populations. J Poult Sci 2007;44:19-28. https://doi.org/10.2141/jpsa.44.19 DOI |
4 | Mwacharo JM, BjOrnstad G, Mobegi V, et al. Mitochondrial DNA reveals multiple introductions of domestic chicken in East Africa. Mol Phylogenet Evol 2011;58:374-82. https://doi.org/10.1016/j.ympev.2010.11.027 DOI |
5 | Van Marle-Koster E, Nel LH. Genetic characterization of native southern African chicken populations: evaluation and selection of polymorphic microsatellite markers. S Afr J Anim Sci 2000;30:1-6. http://dx.doi.org/10.4314/sajas.v30i1.3866 |
6 | Ferdaus AJM, Bhuiyan MSA, Hassin BM, Bhuiyan AKFH, Howlider MAR. Phenotypic characterization and productive potentialities of indigenous dwarf chicken of Bangladesh. Bang J Anim Sci 2016;45:52-61. https://doi.org/10.3329/bjas.v45i1.27489 |
7 | Das SC, Chowdhury SD, Khatun MA, Nishibori M, Isobe N, Yoshimura Y. Poultry production profile and expected future projection in Bangladesh. World's Poult Sci 2008;64:99-118. https://doi.org/10.1017/S0043933907001754 DOI |
8 | Bhuiyan AKFH. Implementation of National Livestock development Policy (2007) and National Poultry development Policy (2008): Impact on smallholder livestock rearers. Keynote paper presented at the South Asia Pro Poor Livestock Policy programme (SAPPLP)-BRAC workshop held at BRAC Centre Inn., 2011; Dhaka, Bangladesh. |
9 | Bhuiyan AKFH, Bhuiyan MSA, Deb GK. Indigenous chicken genetic resources of Bangladesh: Current status and future outlook. Anim Genet Resour Infor 2005;36:73-84. https://doi.org/10.1017/S1014233900001899 DOI |
10 | Bhuiyan MSA, Chen S, Faruque S, Bhuiyan AKFH, Beja-Pereira A. Genetic diversity and maternal origin of Bangladeshi chicken. Mol Biol Rep 2013;40:4123-8. https://doi.org/10.1007/s11033-013-2522-6 DOI |
11 | Cho N, Hoque R, Seo DW, et al. ISAG-recommended microsatellite marker analysis among five Korean native chicken lines. J Anim Sci Technol 2012;54:401-9. DOI |
12 | Weigend S, Romanov MN. Current strategies for the assessment and evaluation of genetic diversity in chicken resources. World's Poult Sci J 2001;57:275-88. https://doi.org/10.1079/WPS20010020 DOI |
13 | Zhang X, Leung FC, Chan DK, Wu C. Genetic diversity of Chinese native chicken breeds based on protein polymorphism, randomly amplified polymorphic DNA, and Microsatellite polymorphism. Poult Sci 2002;81:1463-72. https://doi:10.1093/ps/81.10.1463 DOI |
14 | Kanginakudra S, Metta M, Jakati RD, Nagaraju J. Genetic evidence from Indian red jungle fowl corroborates multiple domestication of modern day chicken. BMC Evol Biol 2008;8:174. https://doi.org/10.1186/1471-2148-8-174 DOI |
15 | Takezaki N, Nei M, Tamura K. POPTREE2: Software for constructing population trees from allele frequency data and computing other population statistics with windows interface. Mol Biol Evol 2010;27:747-52. https://doi.org/10.1093/molbev/msp312 DOI |
16 | Islam MA, Seeland G, Bulbul SM, Howlider MAR. Meat yield and cooked meat taste of hybrids from different genetic groups in a hot-humid climate. Indian J Anim Res 2002;36:35-8. |
17 | Counute JM, Luikart G. Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 1996;144:2001-14. DOI |
18 | Peakall R, Smouse PE. GenAlEX 6.5: Genetic analysis in Excel. Population genetic software for teaching and research an update. Bioinformatics 2012;28:2537-9. https://doi.org/10.1093/bioinformatics/bts460 DOI |
19 | Goudet J. FSTAT ver.1.2: A computer program to calculate F-statistics. J Hered 1995;86:485-6. https://doi.org/10.1093/oxfordjournals.jhered.a111627 DOI |
20 | Excoffier L, Lischer HEL. Arlequin suite ver. 3.5: A new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 2010;10:564-7. https://doi.org/10.1111/j.1755-0998.2010.02847.x DOI |
21 | Pritchard JK, Stephens M, Donnelly P. Inference of population structure using multilocus genotype data. Genetics 2000;155:945-59. DOI |
22 | Jombart T, Collins C. A tutorial for discriminant analysis of principal components (DAPC) using adegenet 2.0.0. MRC center for Outbreak analysis and modeling; 2015 Jun 23; Imperial College London; South Kensington, London, UK. pp 9-42. |
23 | Faruque S, Siddiquee NU, Afroz MA, Islam MS. Phenotypic characterization of Native Chicken reared under intensive management system. J Bangladesh Agric Univ 2010;8:79-82. DOI |
24 | Sarker MJA, Bhuiyan MSA, Faruque MO, Ali MA, Lee JH. Phenotypic characterization of Aseel chicken of Bangladesh. Korean J Poult Sci 2012;39:9-15. http://dx.doi.org/10.5536/KJPS.2012.39.1.009 DOI |
25 | Rudresh BH, Murthy HNN, Jayashankar MR, Nagaraj CS, Kotresh AM, Byregowda SM. Microsatellite based genetic diversity study in indigenous chicken ecotypes of Karnataka. Vet World 2015;8:970-6. http://dx.doi.org/10.14202/vetworld.2015.970-976 DOI |
26 | Halima HM, Neser FWC, De-Kock A, Van MKE. Study on the genetic diversity of native chickens in northwest Ethiopia using microsatellite markers. Afr J Biotechnol 2009;8:1347-53. |
27 | Chen G, Bao W, Shu J, et al. Assessment of population structure and genetic diversity of 15 Chinese indigenous chicken breeds using microsatellite markers. Asian-Australas J Anim Sci 2008;21:331-9. https://doi.org/10.5713/ajas.2008.70125 DOI |
28 | Lyimo CM, Weigend A, Janben-Tapken U, Msoffe PL, Samianer H, Weigend S. Assessing the genetic diversity of five Tanzanian chicken ecotypes using molecular tools. S Afr J Anim Sci 2013;43:499-510. http://dx.doi.org/10.4314/sajas.v43i4.7 |
29 | Botstein DRL, White MS, Davis RW. Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am J Hum Genet 1980;32:314-31 |
30 | Weir BS, Cockerham CC. Estimating F-statistics for the analysis of population structure. Evolution 1984;38:1358-70. DOI |
31 | Yamamoto Y, Oka T, Faruque MO, Amano T. Genetic diversity and genetic relationship of Bangladeshi native chickens. In: Proceedings of the 7h International Poultry Show and Seminar. World's Poultry Science Association, Bangladesh Branch; 2011. pp. 207-15. |
32 | Seo DW, Hoque MR, Choi NR, et al. Discrimination of Korean native chicken lines using fifteen selected Microsatellite markers. Asian-Australas J Anim Sci 2013;26:316-22. https://doi.org/10.5713/ajas.2012.12469 DOI |