Isolation and characterization of new Methanosarcina mazei strains KOR-3, -4, -5, and -6 from an anaerobic digester using pig slurry |
Battumur, Urantulkhuur
(Graduate School of Future Convergence, Hankyong National University)
Yoon, Youngman (Biogas Research Center, Hankyong National University) Bae, Gui Sek (Department of Animal Science and Technology, Chung-Ang University) Kim, Chang-Hyun (Biogas Research Center, Hankyong National University) |
1 | Martinez J, Guiziou F, Peu P, Gueutier V. Influence of treatment techniques for pig slurry on methane emissions during subsequent storage. Biosyst Eng 2003;85:347-54. DOI |
2 | Garcia JL, Patel BKC, Ollivier B. Taxonomic phylogenetic and ecological diversity of methanogenic archaea. Anaerobe 2000;6:205-26. DOI |
3 | Li Y, Lan K, Rong Y, et al. Isolation and characterization of a new Methanosarcina mazei strain GFJ07 from a mountain forest pond. Malaysian J Microbiol 2012;8:6-10. |
4 | Cairo JJ, Clarens M, Touzel JP, Bardulet M, Paris JM. Methanosarcina mazei JC2, a new methanogenic strain isolated from lake sediments, that does not use . Microbiologia (Madrid, Spain) 1992;8:21-31. |
5 | Chouari R, Le Paslier D, Daegelen P, et al. Novel predominant archaeal and bacterial groups revealed by molecular analysis of an anaerobic sludge digester. Environ Microbiol 2005;7:1104-15. DOI |
6 | Kim YS, Yoon YM, Kim CH, Giersdorf J. Status of biogas technologies and policies in South Korea. Renew Sust Energ Rev 2012;16:3430-8. DOI |
7 | Hungate RE. The anaerobic mesophilic cellulolytic bacteria. Bacteriol Rev 1950;14:1-49. |
8 | Balch WE, Fox GE, Magrum LJ, Woese CR, Wolfe RS. Methanogens:reevaluation of a unique biological group. Microbiol Rev 1979;43:260-96. |
9 | Sowers KR, Schreier HJ. Media for methanogens. In: Sowers KR, Schreier HJ, editors. Archaea - a laboratory manual methanogens. New York: Cold Spring Harbor Laboratory Press; 1995. p. 459-89. |
10 | Grokopf R, Janssen PH, Liesack W. Diversity and structure of the methanogenic community in anoxic rice paddy soil microcosms as examined by cultivation and direct 16S rRNA gene sequence retrieval. Appl Environ Microbiol 1998;64:960-9. |
11 | Shlimon AG, Friedrich MW, Niemann H, Ramsing NB, Finster K. Methanobacterium aarhusense sp. nov., a novel methanogen isolated from a marine sediment (Aarhus Bay, Denmark). Int J Syst Evol Micrbiol 2004;54:759-63. DOI |
12 | Luton PE, Wayne JM, Sharp RJ, Riley PW. The mcrA gene as an alternative to 16S rRNA in the phylogenetic analysis of methanogen populations in landfill. Microbiol 2002;148:3521-30. DOI |
13 | Hales BA, Edwards C, Ritchie DA, et al. Isolation and identification of methanogen-specific DNA from blanket bog feat by PCR amplification and sequence analysis. Appl Environ Microbiol 1996;62:668-75. |
14 | Simankova MV, Kotsyurbenko OR, Lueders T, et al. Isolation and characterization of new strains of methanogens from cold terrestrial habitats. Syst Appl Microbiol 2003;26:312-8. DOI |
15 | Tamura K, Dudley J, Nei M, Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 2007; 24:1596-9. DOI |
16 | Battumur U, Yoon YM, Kim CH. Isolation and characterization of a new Methanobacterium formicicum KOR-1 from an anaerobic digester using pig slurry. Asian-Austral J Anim Sci 2016;29:586-93. DOI |
17 | Ferry JG. Methanogenesis: ecology, physiology, biochemistry and genetics. New York, NY: Chapman & Hall; 1993. |
18 | Lai MC, Shu CM, Chen SC, et al. Methanosarcina mazei strain O1M9704, methanogen with novel tubule isolated from estuarine environment. Curr Microbiol 2000;41:15-20. DOI |
19 | Xun LY, Mah RA, Boone DR. Isolation and characterization of disaggregatase from Methanosarcina mazei LYC. Appl Environ Microbiol 1990;56:3693-8. |
20 | Rocheleau S, Greer CW, Lawrence JR, et al. Differentiation of Methanosaeta concilii and Methanosarcina barkeri in anaerobic mesophilic granular sludge by fluorescent in situ hybridization and confocal scanning laser microscopy. Appl Environ Microbiol 1999;65:2222-9. |
21 | Oren A. The family Methanosarcinaceae. In: Rosenberg E, DeLong EF, Lory S, Stackebrandt E, Thompson F, editors. The Prokaryotes:other major lineages of bacteria and the archaea. Berlin, Germany:Springer; 2014. p. 259-81. |
22 | Sowers KR, Baron SF, Ferry JG. Methanosarcina acetivorans sp. nov., an acetotrophic methane producing bacterium isolated from marine sediments. Appl Environ Microbiol 1984;47:971-8. |
23 | Zinder SH, Sowers KR, Ferry JG. Methanosarcina thermophila sp. nov., a thermophilic, acetotrophic, methane producing bacterium. Int J Syst Bacteriol 1985;35:522-3. DOI |
24 | Qian D, Ma L, Yuan Y, et al. Isolation, identification and phylogenetic analysis of an alkalophilic Methanosarcina. Chinese J Appl Environ Biol 2012;2012:262-6. |
25 | Kadam PC, Godbole SH, Ranade DR. Isolation of methanogens from Arabian sea sediments and their salt tolerance. FEMS Microbiol Ecol 1989;62:343-7. DOI |
26 | Thakker CD, Ranade DR. An alkalophilic Methanosarcina isolated from Lonar crater. Curr Sci 2002;82:455-8. |
27 | Clarens M, Cairo JJ, Paris JM, Macario AJL, de Macario EC. Characterization and forms of JC3, a new Methanosarcina isolate: comparison with Methanosarcina mazei strains S-, MC3, and LYC. Curr Microbiol 1993;26:167-74. DOI |
28 | Hilpert R, Winter J, Hammes W, Kandler O. The sensitivity of archaebacteria to antibiotics. Zbl Bakt Mik Hyg I C 1981;2:11-20. |
29 | Thauer RK. Biochemistry of methanogenesis: a tribute to Marjory Stephenson. Microbiol 1998;144:2377-406. DOI |
30 | Wilkins D, Lu XY, Shen Z, Chen J, Lee PKH. Pyrosequencing of mcrA and archaeal 16S rRNA genes reveals diversity and substrate preferences of methanogen communities in anaerobic digesters. Appl Environ Microbiol 2015;81:604-13. DOI |
31 | Springer E, Sachs MS, Woese CR, Boone DR. Partial gene sequences for the a subunit of methyl-coenzyme M reductase (mcrI) as a phylogenetic tool for the family Methanosarcinaceae. Int J Syst Bacteriol 1995;45:554-9. DOI |
32 | Dabert P, Vedrenne F, Brard C, Beline F. Microbiological aspects of methane production during pig manure storage. In: 13th Ramiran international conference, potential for simple technology solutions in organic manure management; 2008 June 11; Albena, France: 2008. p. 96-9. |
33 | Sowers KR, Gunsalus RP. Halotolerance in Methanosarcina spp.: role of -acetyl--lysine, -glutamate, glycine betaine, and as compatible solutes for osmotic adaptation. Appl Environ Microbiol 1995;61:4382-8. |