Acknowledgement
This study was supported by a grant from the Nakdonggang National Institute of Biological Resources (NNIBR), funded by the Ministry of Environment (MOE) of the Republic of Korea (NNIBR20241103).
References
- Donald L, A Pipite, R Subramani, J Owen, RA Keyzers and T Taufa. 2022. Streptomyces: still the biggest producer of new natural secondary metabolites, a current perspective. Microbiol. Res. 13:418-465. https://doi.org/10.3390/microbiolres13030031
- Edwards RA, B Rodriguez-Brito, L Wegley, M Haynes, M Breitbart, DM Peterson, MO Saar, S Alexander, EC Alexander Jr. and F Rohwer. 2006. Using pyrosequencing to shed light on deep mine microbial ecology. BMC Genomics 7:57. https://doi.org/10.1186/1471-2164-7-57
- Felsenstein J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783-791. https://doi.org/10.2307/2408678
- Gao B and RS Gupta. 2012. Phylogenetic framework and molecular signatures for the main clades of the phylum Actinobacteria. Microbiol. Mol. Biol. Rev. 76:66-112. https://doi.org/10.1128/mmbr.05011-11
- Huse SM, L Dethlefsen, JA Huber, DM Welch, DA Relman and ML Sogin. 2008. Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing. PLoS Genet. 4:e1000255. https://doi.org/10.1371/annotation/3d8a6578-ce56-45aa-bc71-05078355b851
- Jeon YS, K Lee, SC Park, BS Kim, YJ Cho, SM Ha and J Chun. 2014. EzEditor: A versatile sequence alignment editor for both rRNA-and protein-coding genes. Int. J. Syst. Evol. Microbiol. 64:689-691. https://doi.org/10.1099/ijs.0.059360-0
- Kimura M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120. https://doi.org/10.1007/BF01731581
- Krieg NR, W Ludwig, J Euzeby and WB Whitman. 2010. Phylum XIV. Bacteroidetes phyl. nov. pp. 25-469. In: Bergey's Manual of Systematic Bacteriology. Volume 4: The Bacteroidetes, Spirochaetes, Tenericutes (Mollicutes), Acidobacteria, Fibrobacteres, Fusobacteria, Dictyoglomi, Gemmatimonadetes, Lentisphaerae, Verrucomicrobia, Chlamydiae, and Planctomycetes(Krieg NR, JT Staley, DR Brown, BP Hedlund, BJ Paster, NL Ward, W Ludwig and WB Whitman, eds.). 2nd Edition. Springer. New York. https://doi.org/10.1007/978-0-387-68572-4
- Kumar S, G Stecher and K Tamura. 2016. MEGA7: Molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol. Biol. Evol. 33:1870-1874. https://doi.org/10.1093/molbev/msw054
- NIBR. 2023. National List of Species of Korea. National Institute of Biological Resources. Incheon, Korea. https://www.kbr.go.kr/ Accessed January 29, 2024.
- Oren A and GM Garrity. 2021. Valid publication of the names of forty-two phyla of prokaryotes. Int. J. Syst. Evol. Microbiol. 71:005056. https://doi.org/10.1099/ijsem.0.005056
- Saitou N and M Nei. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425. https://doi.org/10.1093/oxfordjournals.molbev.a040454
- Servin JA, CW Herbold, RG Skophammer and JA Lake. 2008. Evidence excluding the root of the tree of life from the actinobacteria. Mol. Biol. Evol. 25:1-4. https://doi.org/10.1093/molbev/msm249
- Slonczewski JL, J Foster and E Zinser. 2020. Microbiology: An Evolving Science. 5th Edition. W.W. Norton and Company. New York.
- Stackebrandt E, RGE Murray and HG Truper. 1998. Proteobacteria classis nov., a name for the phylogenetic taxon that includes the "purple bacteria and their relatives". Int. J. Syst. Bacteriol. 38:321-325. https://doi.org/10.1099/00207713-38-3-321
- Weisburg WG, SM Barns, DA Pelletier and DJ Lane. 1991. 16S ribosomal DNA amplification for phylogenetic study. J. Bacteriol. 173:697-703. https://doi.org/10.1128/jb.173.2.697-703.1991
- Wetzel RG. 2023. Limnology: Lake and River Ecosystems. 4th Edition. Academic Press. San Diego, California.
- WHO. 2008. Safer Water, Better Health: Costs, Benefits and Sustainability of Interventions to Protect and Promote Health. World Health Organization. Geneva. Switzerland.
- Yoon SH, SM Ha, S Kwon, J Lim, Y Kim, H Seo and J Chun. 2017. Introducing EzBioCloud: A taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. Int. J. Syst. Evol. Microbiol. 67:1613-1617. https://doi.org/10.1099/ijsem.0.001755