DOI QR코드

DOI QR Code

Alzheimer progression classification using fMRI data

fMRI 데이터를 이용한 알츠하이머 진행상태 분류

  • 노주현 (조선대학교 컴퓨터공학과) ;
  • 양희덕 (조선대학교 컴퓨터공학과)
  • Received : 2024.01.19
  • Accepted : 2024.02.08
  • Published : 2024.04.30

Abstract

The development of functional magnetic resonance imaging (fMRI) has significantly contributed to mapping brain functions and understanding brain networks during rest. This paper proposes a CNN-LSTM-based classification model to classify the progression stages of Alzheimer's disease. Firstly, four preprocessing steps are performed to remove noise from the fMRI data before feature extraction. Secondly, the U-Net architecture is utilized to extract spatial features once preprocessing is completed. Thirdly, the extracted spatial features undergo LSTM processing to extract temporal features, ultimately leading to classification. Experiments were conducted by adjusting the temporal dimension of the data. Using 5-fold cross-validation, an average accuracy of 96.4% was achieved, indicating that the proposed method has high potential for identifying the progression of Alzheimer's disease by analyzing fMRI data.

기능적 자기 공명영상(functional magnetic resonance imaging;fMRI)의 발전은 뇌 기능의 매핑, 휴식 상태에서 뇌 네트워크의 이해에 상당한 기여를 하였다. 본 논문은 알츠하이머의 진행상태를 분류하기 위해 CNN-LSTM 기반의 분류 모델을 제안한다. 첫 번째로 특징 추출 이전 fMRI 데이터에서 잡음을 제거하기 위해 4단계의 전처리를 수행한다. 두 번째, 전처리가 끝나면 U-Net 구조를 활용하여 공간적 특징을 추출한다. 세 번째, 추출된 공간적 특징은 LSTM을 활용하여 시간적 특징을 추출하여 최종적으로 분류하는 과정을 거친다. 실험은 데이터의 시간차원을 조절하여 진행하였다. 5-fold 교차 검증을 사용하여 평균 96.4%의 정확도를 달성하였고 이러한 결과는 제안된 방법이 fMRI 데이터를 분석하여 알츠하이머의 진행을 식별하는데 높은 잠재력을 가지고 있음을 보여준다.

Keywords

Acknowledgement

이 논문은 2022년도 조선대학교 학술연구비의 지원을 받아 연구되었음

References

  1. Ott, A., Breteler, M.M.B,; Van Harskamp, F., Stijnen, T., Hofman, A. "Incidence and Risk of Dementia: The Rotterdam Study," Am. J. Epidemiol. 147, pp. 574-580, 1988 
  2. Seshadri, Sudha; Beiser, "Operationalizing Diagnostic Criteria for Alzheimer's Disease and Other Age-Related Cognitive Impairment-Part 2," Alzheimer's Dement. 7, pp. 35-52, 2011. 
  3. Serrano-Pozo, Alberto, "Neuropathological Alterations in Alzheimer Disease," Cold Spring Harb. Perspect. Med,. 1, a006189. 2011. 
  4. McKhann, Guy, "Clinical Diagnosis of Alzheimer's Disease" Neurology, 34, 939-939, 1984. 
  5. Petersen, Ronald C. "Mild Cognitive Impairment: Ten Years Later," Arch. Neurol. 66, pp. 1447-1455 2009. 
  6. Farlow, "Treatment of mild cognitive impairment," Curr. Alzheimer Res. 6, pp. 362-367, 2009. 
  7. Eskildsen, Simon F. "Prediction of Alzheimer's Disease in Subjects with Mild Cognitive Impairment from the ADNI Cohort Using Patterns of Cortical Thinning," Neuroimage, 65, pp. 511-521, 2013. 
  8. Beheshti, Iman, "Classification of Alzheimer's Disease and Prediction of Mild Cognitive Impairment-to-Alzheimer's Conversion from Structural Magnetic Resource Imaging Using Feature Ranking and a Genetic Algorithm," Comput. Biol. Med. 83, pp. 109-119, 2017. 
  9. Syaifullah, Ali Haidar "Machine Learning for Diagnosis of AD and Prediction of MCI Progression from Brain MRI Using Brain Anatomical Analysis Using Diffeomorphic Deformation," Front. Neurol. 11, 576029, 2021. 
  10. Nanni, Loris, "Comparison of Transfer Learning and Conventional Machine Learning Applied to Structural Brain MRI for the Early Diagnosis and Prognosis of Alzheimer's Disease," Front. Neurol., 11, 576194, 2020. 
  11. Dhinagar, Nikhil J, "Efficiently Training Vision Transformers on Structural MRI Scans for Alzheimer's Disease Detection," 45th Annual Intermational Conference of the IEEE Engineering in Medicine & Biology Society(EMBC) p. 1-6, 2023 
  12. Gauthier, Serge, "Mild Cognitive Impairment," The Lancet, 367, pp. 1262-1270, 2006. 
  13. Grieder, Matthias, "Default Mode Network Complexity and Cognitive Decline in Mild Alzheimer's Disease," Front. Neurosci, 12, 388987, 2018. 
  14. Vemuri, Prashanthi, "Resting State Functional MRI in Alzheimer's Disease," Alzheimers Res. Ther, 4, pp. 1-9, 2012. 
  15. Vemuri, Prashanthi, "Resting State Functional MRI in Alzheimer's Disease," Alzheimer's research&therapy, Vol. 4, pp. 1-9, Apr. 2012. 
  16. Ogawa, Seiji, Lee, "Oxygenation-Sensitive Contrast in Magnetic Resonance Image of Rodent Brain at High Magnetic Fields," Magnetic resonance in medicine, Vol. 14, No. 1, pp. 68-78, Apr. 1990. 
  17. Hojjati, Seyed Hani, Ebrahimzadeh, Khazaee, Babajani-Feremi, "Predicting Conversion from MCI to AD by Integrating Rs-FMRI and Structural MRI," Computer s in biology and medicine, Vol. 102, pp. 30-39, Nov. 2018. 
  18. Khazaee, Ali, Ebrahimzadeh, Babajani-Feremi, "Classification of Patients with MCI and AD from Healthy Controls Using Directed Graph Measures of Resting-State FMRI," Behavioural brain research, pp. 339-350, Mar. 2017. 
  19. Ronneberger, Olaf, Philipp Fischer, and Thomas Brox, "U-Net: Convolutional Networks for Biomedical Image Segmentation," Medical image computing and computer-assisted intervention-MICCI 2015: 18th international conference, pp. 234-241, Munich, Germany, Oct. 2015. 
  20. Gao, Yunfei and Albert No., "Age Estimation from FMRI Data Using Recurrent Neural Network," Applied Sciences, 12(2): 749, 2022. 
  21. Li, Hongming Yong Fan, "Brain Decoding from Functional Mri Using Long Short-Term Memory Recurrent Neural Networks," Medical Image Computing and Computer Assisted Intervention-MICCAI 2018: 21th international Conference, pp. 320-328, 2018. 
  22. Parmar, Harshit, "Spatiotemporal Feature Extraction and Classification of Alzheimer's Disease Using Deep Learning 3D-CNN for FMRI Data," Journal of Medical Imaging, vol. 7, no. 5, 2020. 
  23. Jack Jr, Clifford, "The Alzheimer's Disease Neuroimaging Initiative (ADNI): MRI Methods," Journal of Magnetic Resonance Imaging: An Official Journal of the International Society for Magnetic Resonance in Medicine, vol. 27, no. 4, pp. 685-691, 2008. 
  24. Sarraf, Saman and Ghassem Tofighi, "Deep Learning-Based Pipeline to Recognize Alzheimer's Disease Using FMRI Data," 2016 future technologies conference(FTC). pp. 816-820, 2016. 
  25. Billones, Ciprian D, "DemNet: A Convolutional Neural Network for the Detection of Alzheimer's Disease and Mild Cognitive Impairment," In Proceedings of the 2016 IEEE region 10 conference (TENCON), 22-25, pp. 3724-3727, November, 2016. 
  26. Jain, Rachna, "Convolutional Neural Network Based Alzheimer's Disease Classification from Magnetic Resonance Brain Images," Cognitive Systems Research. 57, pp. 147-159, 2019. 
  27. Li, Wei, Xuefeng Lin, "Detecting Alzheimer's Disease Based on 4D FMRI: An Exploration under Deep Learning Framework," Neurocomputing, 388, pp. 280-287, 2020. 
  28. Kazemi, Yosra and Sheridan Houghten, "Deep Learning Pipeline to Classify Different Stages of Alzheimer's Disease from FMRI Data," In Proceedings of the 2018 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology(CIBCB), pp. 1-8, 2018. 
  29. Noh Ju-Hyeon, Kim Jun-Hyeok, YANG Hee-Deok, "Classification of Alzheimer's progression using fMRI data," Sensors, 23.14: 6330, 2023.