Animal Bioscience

Asian Australasian Association of Animal Production Societies (아세아태평양축산학회)
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Identification of new major histocompatibility complex-B Haplotypes in Bangladesh native chickens

  • Thisarani Kalhari Ediriweera (Department of Bio-AI Convergence, Chungnam National University) ;
  • Prabuddha Manjula (Department of Animal Science, Uva Wellassa University) ;
  • Jaewon Kim (Division of Animal and Dairy Science, Chungnam National University) ;
  • Jin Hyung Kim (Division of Animal and Dairy Science, Chungnam National University) ;
  • Seonju Nam (Division of Animal and Dairy Science, Chungnam National University) ;
  • Minjun Kim (Division of Animal and Dairy Science, Chungnam National University) ;
  • Eunjin Cho (Department of Bio-AI Convergence, Chungnam National University) ;
  • Mohammad Shamsul Alam Bhuiyan (Department of Animal Breeding and Genetics, Bangladesh Agricultural University) ;
  • Md. Abdur Rashid (Poultry Production Research Division, Bangladesh Livestock Research Institute) ;
  • Jun Heon Lee (Department of Bio-AI Convergence, Chungnam National University)
  • Received : 2023.08.11
  • Accepted : 2023.12.15
  • Published : 2024.05.01
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Abstract

Objective: The major histocompatibility complex in chicken demonstrates a great range of variations within varities, breeds, populations and that can eventually influence their immuneresponses. The preset study was conducted to understand the major histocompatibility complex-B (MHC-B) variability in five major populations of Bangladesh native chicken: Aseel, Hilly, Junglefowl, Non-descript Deshi, and Naked Neck. Methods: These five major populations of Bangladesh native chicken were analyzed with a subset of 89 single nucleotide polymorphisms (SNPs) in the high-density MHC-B SNP panel and Kompetitive Allele-Specific polymerase chain reaction genotyping was applied. To explore haplotype diversity within these populations, the results were analyzed both manually and computationally using PHASE 2.1 program. The phylogenetic investigations were also performed using MrBayes program. Results: A total of 136 unique haplotypes were identified within these five Bangladesh chicken populations, and only one was shared (between Hilly and Naked Neck). Phylogenetic analysis showed no distinct haplotype clustering among the five populations, although they were shared in distinct clades; notably, the first clade lacked Naked Neck haplotypes. Conclusion: The present study discovered a set of unique MHC-B haplotypes in Bangladesh chickens that could possibly cause varied immune reponses. However, further investigations are required to evaluate their relationships with global chicken populations.

Keywords

Acknowledgement

This research was funded by a grant from the National Research Foundation, Republic of Korea (grant number 2022R1F1A1064025).

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