Korean Journal of Plant Taxonomy (식물분류학회지)

The Korean Society of Plant Taxonomists (한국식물분류학회)
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Current status of whole-genome sequences of Korean angiosperms

  • Jongsun PARK (Infoboss Inc. and InfoBoss Research Center) ;
  • Yunho YUN (Infoboss Inc. and InfoBoss Research Center) ;
  • Hong XI (Infoboss Inc. and InfoBoss Research Center) ;
  • Woochan KWON (Infoboss Inc. and InfoBoss Research Center) ;
  • Janghyuk SON (Infoboss Inc. and InfoBoss Research Center)
  • Received : 2023.02.21
  • Accepted : 2023.09.22
  • Published : 2023.09.30
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Abstract

Owing to the rapid development of sequencing technologies, more than 1,000 plant genomes have been sequenced and released. Among them, 69 Korean plant taxa (85 genome sequences) contain at least one whole-genome sequence despite the fact that some samples were not collected in Korea. The sequencing-by-synthesis method (next-generation sequencing) and the PacBio (third-generation sequencing) method were the most commonly used in studies appearing in 65 publications. Several scaffolding methods, such as the Hi-C and 10x types, have also been used for pseudo-chromosomal assembly. The most abundant families among the 69 taxa are Rosaceae (10 taxa), Brassicaceae (7 taxa), Fabaceae (7 taxa), and Poaceae (7 taxa). Due to the rapid release of plant genomes, it is necessary to assemble the current understanding of Korean plant species not only to understand their whole genomes as our own plant resources but also to establish new tools for utilizing plant resources efficiently with various analysis pipelines, including AI-based engines.

Keywords

Acknowledgement

This study was carried out with the support of the InfoBoss Research Grant (IBG-0042).

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