Acknowledgement
This work was supported by Rural Development Administration (Project No. PJ014897032023).
References
- Zhou Y, Wei W, Wang X, Lai R. 2009. Proposal of Sinomonas flava gen. nov., sp. nov., and description of Sinomonas atrocyanea comb. nov. to accommodate Arthrobacter atrocyaneus. Int. J. Syst. Evol. Microbiol. 59: 259-263. https://doi.org/10.1099/ijs.0.000695-0
- Ding L, Hirose T, Yokota A. 2009. Four novel Arthrobacter species isolated from filtration substrate. Int. J. Syst. Evol. Microbiol. 59: 856-862. https://doi.org/10.1099/ijs.0.65301-0
- Zhou Y, Chen X, Zhang Y, Wang W, Xu J. 2012. Description of Sinomonas soli sp. nov., reclassification of Arthrobacter echigonensis and Arthrobacter albidus (Ding et al. 2009) as Sinomonas echigonensis comb. nov. and Sinomonas albida comb. nov., respectively, and emended description of the genus Sinomonas. Int. J. Syst. Evol. Microbiol. 62: 764-769. https://doi.org/10.1099/ijs.0.030361-0
- Kuhn DA, Starr MP. 1960. Arthrobacter atrocyaneus, nov. sp., and its blue pigment. Arch. Mikrobiol. 36: 175-181. https://doi.org/10.1007/BF00412285
- Guo QQ, Ming H, Meng XL, Huang JR, Duan YY, Li S-H, et al. 2015. Sinomonas halotolerans sp. nov., an actinobacterium isolated from a soil sample. Antonie Van Leeuwenhoek 108: 887-895. https://doi.org/10.1007/s10482-015-0543-y
- Lee LH, Azman AS, Zainal N, Yin WF, Mutalib NS, Chan KG. 2015. Sinomonas humi sp. nov., an amylolytic actinobacterium isolated from mangrove forest soil. Int. J. Syst. Evol. Microbiol. 65: 996-1002. https://doi.org/10.1099/ijs.0.000053
- Prabhu DM, Quadri SR, Cheng J, Liu L, Chen W, Yang Y, et al. 2015. Sinomonas mesophila sp. nov., isolated from ancient fort soil. J. Antibiot. (Tokyo) 68: 318-321. https://doi.org/10.1038/ja.2014.161
- Zhang MY, Xie J, Zhang TY, Xu H, Cheng J, et al. 2014. Sinomonas notoginsengisoli sp. nov., isolated from the rhizosphere of Panax notoginseng. Antonie Van Leeuwenhoek 106: 827-835. https://doi.org/10.1007/s10482-014-0252-y
- Bao YY, Huang Z, Mao DM, Sheng XF, He LY. 2015. Sinomonas susongensis sp. nov., isolated from the surface of weathered biotite. Int. J. Syst. Evol. Microbiol. 65: 1133-1137. https://doi.org/10.1099/ijs.0.000064
- Weisburg WG, Barns SM, Pelletier DA, Lane DJ. 1991. 16S ribosomal DNA amplification for phylogenetic study. J. Bacteriol. 173: 697-703. https://doi.org/10.1128/jb.173.2.697-703.1991
- Yoon SH, Ha SM, Kwon S, Lim J, Kim Y, Seo H, et al. 2017. Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequence and whole-genome assemblies. Int. J. Syst. Evol. Microbiol. 67: 1613-1617. https://doi.org/10.1099/ijsem.0.001755
- Pruesse E, Peplies J, Glockner FO. 2012. SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes. Bioinformatics 28: 1823-1829. https://doi.org/10.1093/bioinformatics/bts252
- Saitou N, Nei M. 1987. The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
- Fitch WM. 1971. Toward defining course of evolution: minimum change for a specific tree topology. Syst. Zool. 20: 406-416. https://doi.org/10.2307/2412116
- Kumar S, Stecher G, Tamura K. 2016. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol. Biol. Evol. 33: 1870-1874. https://doi.org/10.1093/molbev/msw054
- Kimura M. 1983. The Neutral Theory of Molecular Evolution., Cambridge: Cambridge University Press.
- Felsenstein J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17: 368-376. https://doi.org/10.1007/BF01734359
- Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, et al. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J. Comput. Biol. 19: 455-477. https://doi.org/10.1089/cmb.2012.0021
- Tatusova T, DiCuccio M, Badretdin A, Chetvernin V, Nawrocki EP, Zaslavsky L, et al. 2016. NCBI prokaryotic genome annotation pipeline. Nucleic Acids Res. 44: 6614-6624. https://doi.org/10.1093/nar/gkw569
- Yoon SH, Ha SM, Lim J, Kwon S, Chun J. 2017. A large-scale evaluation of algorithms to calculate average nucleotide identity. Antonie Van Leeuwenhoek 110: 1281-1286. https://doi.org/10.1007/s10482-017-0844-4
- Meier-Kolthoff JP, Auch AF, Klenk HP, Goker M. 2013. Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 14: 60.
- Smibert RM, Krieg NR. 1994. Phenotypic characterization. In Gerhardt P, Murra RGE, Wood WA, Krieg NR (eds.). Methods for General and Molecular Bacteriology Washington, DC: American Society for Microbiology; pp. 607-654.
- Gorshkova OG, Korotaeva NV, Ostapchuk AM, Voliuvach OV, Gudzenko TV. 2016. Fatty acids composition of microbacterium genus bacteria - destructors of oil hydrocarbons. Mikrobiol. Z 78: 92-98. https://doi.org/10.15407/microbiolj78.05.092
- Collins MD, Jones D. 1981. Distribution of isoprenoid quinone structural types in bacteria and their taxonomic implications. Microbiol. Rev. 45: 316-354. https://doi.org/10.1128/mr.45.2.316-354.1981
- Minnikin DE, O'Donnell AG, Goodfellow M, Alderson G, Athalye M, Schaal A, et al. 1984. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J. Microbiol. Methods 2: 233-241. https://doi.org/10.1016/0167-7012(84)90018-6
- Komagata K, Suzuki KI. 1987. Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol. 19: 161-207. https://doi.org/10.1016/S0580-9517(08)70410-0
- Kim M, Oh HS, Park SC, Chun J. 2014. Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes. Int. J. Syst. Evol. Microbiol. 64: 346-351. https://doi.org/10.1099/ijs.0.059774-0