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Re-identification of Fusarium sambucinum Species Complex Strains in Korea and Their Literature Review

국내에서 분리된 Fusarium sambucinum 종복합체 균주의 재동정 및 문헌 고찰

  • Yunhee Choi (Agricultural Microbiology Division, National Institute of Agricultural Sciences, Rural Development Administration) ;
  • Anbazhagan Mageswari (Agricultural Microbiology Division, National Institute of Agricultural Sciences, Rural Development Administration) ;
  • Hyorim Choi (Agricultural Microbiology Division, National Institute of Agricultural Sciences, Rural Development Administration) ;
  • Jisu Lee (Agricultural Microbiology Division, National Institute of Agricultural Sciences, Rural Development Administration) ;
  • Daseul Lee (Agricultural Microbiology Division, National Institute of Agricultural Sciences, Rural Development Administration) ;
  • Seung-Beom Hong (Agricultural Microbiology Division, National Institute of Agricultural Sciences, Rural Development Administration)
  • 최윤희 (농촌진흥청 국립농업과학원 농업미생물과) ;
  • ;
  • 최효림 (농촌진흥청 국립농업과학원 농업미생물과) ;
  • 이지수 (농촌진흥청 국립농업과학원 농업미생물과) ;
  • 이다슬 (농촌진흥청 국립농업과학원 농업미생물과) ;
  • 홍승범 (농촌진흥청 국립농업과학원 농업미생물과)
  • Received : 2023.03.21
  • Accepted : 2023.04.21
  • Published : 2023.06.30

Abstract

Fusarium sambucinum species complex (FSAMSC) is an important taxonomic group, causing severe plant diseases. Many studies were carried out on FSAMSC plant diseases in Korea, but only 2 species (F. graminearum, F. sambucinum) from 14 host plants were registered in the List of Plant Disease in Korea. To clarify FSAMSC diversity and their pathogenecity, we examined FSAMSC isolates preserved in the Korean Agricultural Culture Collection. Fifty-seven strains were reidentifed as 7 species (F. asiaticum, F. graminearum, F. vorosii, F. meridionale, F. boothii, F. kyushuense, F. armeniacum) based on multi-locus sequence typing analysis. According to previous reports and result of this study, 5 species (F. asiaticum, F. graminearum, F. vorosii, F. armeniacum, F. sambucinum) were pathogenic on 24 host plants in FSAMSC, while the pathogenicity of 3 species (F. meridionale, F. boothii, F. kyushuense) were not clear.

Fusarium sambucinum 종 복합체는 식물에 심각한 질병을 일으키는 분류군이다. 국내에서는 F. sambucinum 종 복합체가 일으키는 식물병에 대한 많은 연구가 보고되었으나, 한국식물 병명목록에는 2종(F. graminearum, F. sambucinum)이 14개의 기주에 식물병을 일으키는 정보만이 등록되어 있다. F. sambucinum 종복합체의 다양성 및 병원성을 확인하기 위해 농업미생물은행(Korean Agricultural Culture Collection)에 보존된 57 균주의 F. sambucinum 종 복합체를 다중 유전자 염기서열 분석(multi-locus sequence typing)을 바탕으로 7종(F. asiaticum, F. graminearum, F. vorosii, F. meridionale, F. bootii, F. kyushuense, F. armeniacum)으로 재동정하였다. 이전의 보고와 이번 연구의 결과에 따라, F. sambucinum 종 복합체 중 5종(F. asiatum, F. graminearum, F. vorosii, F. armeniacum, F. sambucinum)이 24개의 기주에 병원성을 보였으며, 3종(F. meridionale, F. bootii, F. kyushuense)의 병원성은 명확하지 않았다.

Keywords

Acknowledgement

This study was carried out with the suppot (PJ017286) of National Institute of Agricultural Sciences, Rural Development Administration, Republic of Korea.

References

  1. An, T. J., Kim, Y. G., Hur, M., Lee, J. H., Lee, Y. J., Cha, S. W. et al. 2015. Physicochemical treatment for the reduction of Fusarium spp. infested in adlay (Coix lacryma-jobi L.) seeds. Korean J. Medicinal Crop Sci. 23: 460-467. https://doi.org/10.7783/KJMCS.2015.23.6.460
  2. Aoki, T. and O'Donnell, K. 1998. Fusarium kyushuense sp. nov. from Japan. Mycoscience 39: 1-6. https://doi.org/10.1007/BF02461571
  3. Bahadur, A. 2022. Current status of Fusarium and their management strategies. In: Fusarium: An Overview of the Genus, ed. by S. Mahyar Mirmajlessi. IntechOpen, London, UK.
  4. Broders, K. D., Lipps, P. E., Paul, P. A. and Dorrance, A. E. 2007. Evaluation of Fusarium graminearum associated with corn and soybean seed and seedling disease in Ohio. Plant Dis. 91: 1155-1160. https://doi.org/10.1094/PDIS-91-9-1155
  5. Burgess, L. W., Forbes, G. A., Windels, C., Nelson, P. E., Marasas, W. F. O. and Gott, K. P. 1993. Characterization and Distribution of Fusarium acuminatum subsp. armeniacum subsp. nov. Mycologia 85: 119-124. https://doi.org/10.1080/00275514.1993.12026254
  6. Burgess, L. W. and Summerell, B. A. 2000. Taxonomy of Fusarium: Fusarium armeniacum stat & comb. nov. Mycotaxon 75: 347-348.
  7. Choi, H.-W., Hong, S. K., Lee, Y. K. and Kim, W. G. 2013. Diversity and pathogenicity of Fusarium species associated with grain mold of sorghum. Korean J. Mycol. 41: 142-148. https://doi.org/10.4489/KJM.2013.41.3.142
  8. Choi, H.-W., Kim, S. and Hong, S. K. 2020. Diversity and pathogenic characteristics of Fusarium species isolated from wilted soybeans in Korea. Korean J. Mycol. 48: 297-312.
  9. Choi, J.-H., Nah, J.-Y., Jin, H.-S., Lim, S.-B., Paek, J.-S., Lee, M.-J. et al. 2019a. Identification and chemotype profiling of Fusarium species in Korean oat. Res. Plant Dis. 25: 157-163. (In Korean) https://doi.org/10.5423/RPD.2019.25.4.157
  10. Choi, J.-H., Nah, J.-Y., Jin, H.-S., Lim, S.-B., Paek, J.-S., Lee, M.-J. et al. 2019b. Occurrence of Fusarium species in Korean sorghum grains. Res. Plant Dis. 25: 213-219. (In Korean) https://doi.org/10.5423/RPD.2019.25.4.213
  11. Choi, J.-H., Nah, J.-Y., Lee, M.-J., Jang, J.-Y., Lee, T. and Kim, J. 2021. Fusarium diversity and mycotoxin occurrence in proso millet in Korea. LWT 141: 110964.
  12. Crous, P. W., Lombard, L., Sandoval-Denis, M., Seifert, K. A., Schroers, H.-J., Chaverri, P. et al. 2021. Fusarium: more than a node or a foot-shaped basal cell. Stud. Mycol. 98: 100116.
  13. Gerlach, W. and Nirenberg, H. 1982. The Genus Fusarium: A Pictorial Atlas. Kommissionsverlag P. Parey, Berlin, Germany. 406 pp.
  14. Goswami, R. S. and Kistler, H. C. 2004. Heading for disaster: Fusarium graminearum on cereal crops. Mol. Plant Pathol. 5: 515-525. https://doi.org/10.1111/j.1364-3703.2004.00252.x
  15. Han, K. S., Park, J. H. and Park, Y. M. 2001. Stub dieback of carnation caused by Fusarium graminearum. Plant Pathol. J. 17: 101-105.
  16. Hong, S. K., Lee, S., Lee, T., Ham, H., Mun, H. Y., Choi, H. W. et al. 2015. Diversity of mycotoxigenic Fusarium armeniacum isolated from rice grains at harvest time in Korea. Korean J. Mycol. 43: 158-164. https://doi.org/10.4489/KJM.2015.43.3.158
  17. Jang, J. Y., Baek, S. G., Choi, J.-H., Kim, S., Kim, J., Kim, D.-W. et al. 2019. Characterization of nivalenol-producing Fusarium asiaticum that causes cereal head blight in Korea. Plant Pathol. J. 35: 543-552. https://doi.org/10.5423/PPJ.OA.06.2019.0168
  18. Jang, Y., Yi, H., Maharjan, R., Jeong, M. and Yoon, Y. 2022. First report of root rot caused by Fusarium armeniacum on soybean in Korea. Plant Dis. 106: 1306.
  19. Kang, I. J., Shim, H. K., Heu, S. and Kim, K. S. 2020. First report of soybean root and stem rot caused by Fusarium graminearum in South Korea. Plant Dis. 104: 568.
  20. Kim, D.-H., Kim, S.-H., Kwon, S.-W., Lee, J.-K. and Hong, S.-B. 2013. Fungal diversity of rice straw for meju fermentation. J. Microbiol. Biotechnol. 23: 1654-1663. https://doi.org/10.4014/jmb.1307.07071
  21. Kim, D.-W., Kim, G.-Y., Kim, H.-K., Kim, J., Jeon, S. J., Lee, C. W. et al. 2016. Characterization of nivalenol-producing Fusarium culmorum isolates obtained from the air at a rice paddy field in Korea. Plant Pathol. J. 32: 182-189. https://doi.org/10.5423/PPJ.OA.12.2015.0268
  22. Kim, H.-K., Cho, E. J., Lee, S., Lee, Y.-S. and Yun, S.-H. 2012. Functional analyses of individual mating-type transcripts at MAT loci in Fusarium graminearum and Fusarium asiaticum. FEMS Microbiol. Lett. 337: 89-96. https://doi.org/10.1111/1574-6968.12012
  23. Kim, J.-W. and Kim, H. J. 2004. Fusarium fruit rot of posthavest oriental melon (Cucumis melo L. var. makuwa Mak.) caused by Fusarium spp. Res. Plant Dis. 10: 260-267. (In Korean) https://doi.org/10.5423/RPD.2004.10.4.260
  24. Kumar, S., Stecher, G. and Tamura, K. 2016. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol. Biol. Evol. 7: 1870-1874. https://doi.org/10.1093/molbev/msw054
  25. Laraba, I., McCormick, S. P., Vaughan, M. M., Geiser, D. M. and O'Donnell, K. 2021. Phylogenetic diversity, trichothecene potential, and pathogenicity within Fusarium sambucinum species complex. PLoS ONE 16: e0245037.
  26. Lee, J., Chang, I.-Y., Kim, H., Yun, S.-H., Leslie, J. F. and Lee, Y.-W. 2009. Genetic diversity and fitness of Fusarium graminearum populations from rice in Korea. Appl. Environ. Microbiol. 75: 3289-3295. https://doi.org/10.1128/AEM.02287-08
  27. Lee, J., Kim, H., Jeon, J.-J., Kim, H.-S., Zeller, K. A., Carter, L. L. A. et al. 2012. Population structure of and mycotoxin production by Fusarium graminearum from maize in South Korea. Appl. Environ. Microbiol. 78: 2161-2167. https://doi.org/10.1128/AEM.07043-11
  28. Lee, T., Oh, D.-W., Kim, H.-S., Lee, J., Kim, Y.-H., Yun, S.-H. et al. 2001. Identification of deoxynivalenol- and nivalenol-producing chemotypes of Gibberella zeae by using PCR. Appl. Environ. Microbiol. 67: 2966-2972. https://doi.org/10.1128/AEM.67.7.2966-2972.2001
  29. Lee, T., Paek, J.-S., Lee, K. A., Lee, S., Choi, J.-H., Ham, H. et al. 2016. Occurrence of toxigenic Fusarium vorosii among small grain cereals in Korea. Plant Pathol. J. 32: 407-413. https://doi.org/10.5423/PPJ.OA.05.2016.0123
  30. Liu, Y. J., Whelen, S. and Hall, B. D. 1999. Phylogenetic relationships among ascomycetes: evidence from an RNA polymerse II subunit. Mol. Biol. Evol. 16: 1799-1808. https://doi.org/10.1093/oxfordjournals.molbev.a026092
  31. Nalam, V. J., Alam, S., Keereetaweep, J., Venables, B., Burdan, D., Lee, H. et al. 2015. Facilitation of Fusarium graminearum infection by 9-lipoxygenases in arabidopsis and wheat. Mol. Plant MicrobeInteract. 28: 1142-1152. https://doi.org/10.1094/MPMI-04-15-0096-R
  32. O'Donnell, K., Kistler, H. C., Cigelnik, E. and Ploetz, R. C. 1998. Multiple evolutionary origins of the fungus causing Panama disease of banana: concordant evidence from nuclear and mitochondrial gene genealogies. Proc. Natl. Acad. Sci. U. S. A. 95: 2044-2049. https://doi.org/10.1073/pnas.95.5.2044
  33. O'Donnell, K., Kistler, H. C., Tacke, B. K. and Casper, H. H. 2000. Gene genealogies reveal global phylogeographic structure and reproductive isolation among lineages of Fusarium graminearum, the fungus causing wheat scab. Proc. Natl. Acad. Sci. U. S. A. 97: 7905-7910. https://doi.org/10.1073/pnas.130193297
  34. O'Donnell, K., Sutton, D. A., Rinaldi, M. G., Sarver, B. A. J., Balajee, S. A., Schroers, H.-J. et al. 2010. Internet-accessible DNA sequence database for identifying fusaria from human and animal infections. J. Clin. Microbiol. 48: 3708-3718. https://doi.org/10.1128/JCM.00989-10
  35. O'Donnell, K., Ward, T. J., Geiser, D. M., Kistler, H. C. and Aoki, T. 2004. Genealogical concordance between the mating type locus and seven other nuclear genes supports formal recognition of nine phylogenetically distinct species within the Fusarium graminearum clade. Fungal Genet. Biol. 41: 600-623. https://doi.org/10.1016/j.fgb.2004.03.003
  36. O'Donnell, K., Ward, T. J., Robert, V. A. R. G., Crous, P. W., Geiser, D. M. and Kang, S. 2015. DNA sequence-based identification of Fusarium: current status and future directions. Phytoparasitica 43: 583-595. https://doi.org/10.1007/s12600-015-0484-z
  37. O'Donnell, K., Whitaker, B. K., Laraba, I., Proctor, R. H., Brown, D. W., Broders, K. et al. 2022. DNA sequence-based identification of Fusarium: a work in progress. Plant Dis. 106: 1597-1609. https://doi.org/10.1094/PDIS-09-21-2035-SR
  38. Ok, H. E., Kim, D. M., Kim, D., Chung, S. H., Chung, M.-S., Park, K. H. et al. 2014. Mycobiota and natural occurrence of aflatoxin, deoxynivalenol, nivalenol and zearalenone in rice freshly harvested in South Korea. Food Control 37: 284-291. https://doi.org/10.1016/j.foodcont.2013.09.020
  39. Reeb, V., Lutzoni, F. and Roux, C. 2004. Contribution of RPB2 to multilocus phylogenetic studies of the euascomycetes (Pezizomycotina, Fungi) with special emphasis on the lichen-forming Acarosporaceae and evolution of polyspory. Mol. Phylogenet. Evol. 32: 1036-1060. https://doi.org/10.1016/j.ympev.2004.04.012
  40. Ryu, J.-G., Lee, S., Lee, S.-H., Son, S.-W., Nam, Y. J., Kim, M. et al. 2011. Natural occurrence of Fusarium head blight and its mycotoxins in 2010 harvested barley and wheat grains in Korea. Res. Plant. Dis. 17: 272-279. (In Korean) https://doi.org/10.5423/RPD.2011.17.3.272
  41. Seo, Y. S., Seo, J. A., Sohn, H. B. and Lee, Y. W. 1998. Production of 8-ketotrichothecenes by Fusarium gramineaerum on corn and barley. Korean J. Plant Pathol. 14: 418-424.
  42. Starkey, D. E., Ward, T. J., Aoki, T., Gale, L. R., Kistler, H. C., Geiser, D. M. et al. 2007. Global molecular surveillance reveals novel Fusarium head blight species and trichothecene toxin diversity. Fungal Genet. Biol. 44: 1191-1204. https://doi.org/10.1016/j.fgb.2007.03.001
  43. Summerell, B. A. 2019. Resolving Fusarium: current status of the genus. Annu. Rev. Phytopathol. 57: 323-339. https://doi.org/10.1146/annurev-phyto-082718-100204