Microbiology and Biotechnology Letters (한국미생물·생명공학회지)

The Korean Society for Microbiology and Biotechnology (한국미생물·생명공학회)
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Whole-Genome Sequence of Priestia aryabhattai Strain S2 Isolated from the Rhizosphere of Soybean (Glycine max)

  • Amani Sliti (Department of Applied Biosciences, Kyungpook National University) ;
  • Min-Ji Kim (Department of Applied Biosciences, Kyungpook National University) ;
  • GyuDae Lee (Department of Applied Biosciences, Kyungpook National University) ;
  • Yeong-Jun Park (NGS Core Facility, Kyungpook National University) ;
  • Jae-Ho Shin (Department of Applied Biosciences, Kyungpook National University)
  • Received : 2023.07.24
  • Accepted : 2023.09.20
  • Published : 2023.09.28
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Abstract

We present the complete genome sequence of Priestia aryabhattai strain S2 isolated from the soybean rhizosphere. The genome consists of a single circular chromosome of 5,070,860 bp with a G+C content of 38.3% and 2 plasmids, P1(148,124 bp, GC content 33.3%) and P2 (76,418 bp, GC content 36.5%).

Keywords

Acknowledgement

This work was carried out with the support of "The Cooperative Research Program for Agriculture Science & Technology Development (Project No. PJ015697)" Rural Development Administration, Republic of Korea. Supported by Korea Basic Science Institute (National Research Facilities and Equipment Center) grant funded by the Ministry of Education (2021R1A6C101A416) and by a project to train professional personnel in biological materials by the Ministry of Environment. We express our sincere appreciation to the Kyungpook National University NGS Core Facility for collaborative efforts in facilitating the Nanopore sequencing.

References

  1. de Andrade LA, Santos CHB, Frezarin ET, Sales LR, Rigobelo EC. 2023. Plant growth-promoting rhizobacteria for sustainable agricultural production. Microorganisms 11: 1088. 
  2. Basu A, Prasad P, Das SN, Kalam S, Sayyed R, Reddy M, et al. 2021. Plant growth promoting rhizobacteria (PGPR) as green bioinoculants: recent developments, constraints, and prospects. Sustainability 13: 1140. 
  3. Bhat BA, Tariq L, Nissar S, Islam ST, Islam SU, Mangral Z, et al. 2022. The role of plant-associated rhizobacteria in plant growth, biocontrol and abiotic stress management. J. Appl. Microbiol. 133: 2717-2741.  https://doi.org/10.1111/jam.15796
  4. Nsa IY, Omolere BM. 2023. Draft genome sequence and annotation of Priestia aryabhattai strain BD1 isolated from a dye sediment. Microbiol. Resour. Announc. 12: e01175-01122. 
  5. Park Y-G, Mun B-G, Kang S-M, Hussain A, Shahzad R, Seo C-W, et al. 2017. Bacillus aryabhattai SRB02 tolerates oxidative and nitrosative stress and promotes the growth of soybean by modulating the production of phytohormones. PLoS One 12: e0173203. 
  6. Xu H, Gao J, Portieles R, Du L, Gao X, Borras-Hidalgo O. 2022. Endophytic bacterium Bacillus aryabhattai induces novel transcriptomic changes to stimulate plant growth. PLoS One 17: e0272500. 
  7. Taylor TL, Volkening JD, DeJesus E, Simmons M, Dimitrov KM, Tillman GE, et al. 2019. Rapid, multiplexed, whole genome and plasmid sequencing of foodborne pathogens using long-read nanopore technology. Sci. Rep. 9: 16350. 
  8. Chen Y, Zhang Y, Wang AY, Gao M, Chong Z. 2021. Accurate longread de novo assembly evaluation with Inspector. Genome Biol. 22: 1-21.  https://doi.org/10.1186/s13059-020-02207-9
  9. Gurevich A, Saveliev V, Vyahhi N, Tesler G. 2013. QUAST: quality assessment tool for genome assemblies. Bioinformatics 29: 1072-1075.  https://doi.org/10.1093/bioinformatics/btt086
  10. Tatusova T, DiCuccio M, Badretdin A, Chetvernin V, Nawrocki EP, Zaslavsky L, et al. 2016. NCBI prokaryotic genome annotation pipeline. Nucleic Acids Res. 44: 6614-6624.  https://doi.org/10.1093/nar/gkw569
  11. Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, et al. 2008. The RAST Server: rapid annotations using subsystems technology. BMC Genomics 9: 75. 
  12. Grant JR, Enns E, Marinier E, Mandal A, Herman EK, Chen C-Y, et al. 2023. Proksee: in-depth characterization and visualization of bacterial genomes. Nucleic Acids Res. 51: W484-W492. 
  13. Yoo S-J, Weon H-Y, Song J, Sang MK. 2019. Induced tolerance to salinity stress by halotolerant bacteria Bacillus aryabhattai H19-1 and B. mesonae H20-5 in tomato plants. J. Microbiol. Biotechnol. 29: 1124-1136.  https://doi.org/10.4014/jmb.1904.04026
  14. Shahid M, Zeyad MT, Syed A, Singh UB, Mohamed A, Bahkali AH, et al. 2022. Stress-tolerant endophytic isolate Priestia aryabhattai BPR-9 modulates physio-biochemical mechanisms in wheat (Triticum aestivum L.) for enhanced salt tolerance. Int. J. Environ. Res. Public Health 19: 10883.