DOI QR코드

DOI QR Code

A report of seven unrecorded bacterial species in Korea, isolated from marine sediment

  • Chi Young Hwang (Department of Bioengineering and Nano-Bioengineering, Incheon National University) ;
  • Eui-Sang Cho (Department of Bioengineering and Nano-Bioengineering, Incheon National University) ;
  • Dong-Hyun Jung (Microorganism Resources Division, National Institute of Biological Resources) ;
  • Ki-Eun Lee (Microorganism Resources Division, National Institute of Biological Resources) ;
  • In-Tae Cha (Microorganism Resources Division, National Institute of Biological Resources) ;
  • Won-Jae Chi (Microorganism Resources Division, National Institute of Biological Resources) ;
  • Myung-Ji Seo (Department of Bioengineering and Nano-Bioengineering, Incheon National University)
  • Received : 2022.12.30
  • Accepted : 2023.02.09
  • Published : 2023.05.31

Abstract

In March 2021, marine sediment from East Sea samples were suspended in a 2% NaCl solution, and serial dilution was performed in fresh marine and Reasoner's 2A agar. Isolated bacterial strains were identified based on 16S rRNA gene sequences, and showed at least 98.7% sequence similarity with previously reported bacterial species. Finally, seven bacterial strains which were validly published but not reported in Korea, were obtained. These isolates were allocated to the orders Bacillales and Flavobacteriales. The three Flavobacteriales strains are classified into the family Flavobacteriaceae. The other four Bacillales belong to the families Bacillaceae and Paenibacillaceae. The seven unrecorded bacterial strains in this study are classified into seven different genera, which are assigned to Mesobacillus, Paenibacillus, Gramella, Gillisia, Arenibacter, Fictibacillus, and Brevibacillus. During the investigation, the possibility of excavation of various unrecorded species in domestic marine sediment was confirmed. Gram-staining, cell morphology, physiological and basic biochemical characteristics, and phylogenetic analysis were performed in this study and provided in the description of each strain.

Keywords

Acknowledgement

This work was supported by grants from the National Institute of Biological Resources funded by the Ministry of Environment(No. NIBR202203112), Republic of Korea.

References

  1. Cheng, T.H., N. Ismail, N. Kamaruding, J. Saidin and M. Danish-Daniel. 2020. Industrial enzymes-producing marine bacteria from marine resources. Biotechnology Reports 27:e00482.
  2. Hall, T.A. 1999. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Serries 41:95-98.
  3. Jahromi, S.T. and N. Barzkar. 2018. Future direction in marine bacterial agarases for industrial applications. Applied Microbiology and Biotechnology 102:6847-6863. https://doi.org/10.1007/s00253-018-9156-5
  4. Jannasch, H.W. and C.D. Taylor. 1984. Deep-sea microbiology. Annual Review of Microbiology 38:487-514. https://doi.org/10.1146/annurev.mi.38.100184.002415
  5. Kato, C., T. Sato and K. Horikoshi. 1995. Isolation and properties of barophilic and barotolerant bacteria from deepsea mud samples. Biodiversity and Conservation 4:1-9. https://doi.org/10.1007/BF00115311
  6. Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular and Evolution 16:111-120. https://doi.org/10.1007/BF01731581
  7. Kumar, S., G. Stecher and K. Tamura. 2016. MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets. Molecular Biology and Evolution 33:1870-1874. https://doi.org/10.1093/molbev/msw054
  8. Lane, D.J. 1991. 16S/23S rRNA sequencing. In: E.G. Stackebrandt (ed.), Nucleic Acid Techniques in Bacterial Systematics, John Wiley and Sons, New York, NY, USA. pp. 115-148.
  9. Porras, M.A., C. Witale, M.A. Villar and M.A. Cubitto. 2017. Bioconversion of glycerol to poly (HB-co-HV) copolymer in an inexpensive medium by a Bacillus megaterium strain isolated from marine sediments. Journal of Environmental Chemical Engineering 5:1-9. https://doi.org/10.1016/j.jece.2016.11.012
  10. Saitou, N. and M. Nei. 1987. The neighbour-joining method: A new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4:406-425.
  11. Takami, H., K. Kobata, T. Nagahama, H. Kobayashi, A. Inoue and K. Horikoshi. 1999. Biodiversity in deep-sea sites located near the south part of Japan. Extremophiles 3:97-102. https://doi.org/10.1007/s007920050104
  12. Thombre, R.S., V.D. Shinde, R.S. Oke, S.K. Dhar and Y.S. Shouche. 2016. Biology and survival of extremely halophilic archaeon Haloarcula marismortui RR12 isolated from Mumbai salterns, India in response to salinity stress. Scientific Report 6:25642.
  13. Thompson, J.D., D.G. Higgins and T.J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22:4673-4680. https://doi.org/10.1093/nar/22.22.4673
  14. Whitman, W.B., D.C. Coleman and W.J. Wiebe. 1998. Prokaryotes: The unseen majority. PNAS 95:6578-6583. https://doi.org/10.1073/pnas.95.12.6578
  15. Yoon, S.H., S.M. Ha, S. Kwon, J. Lim, Y. Kim, H. Seo and J. Chun. 2017. Introducing EzBioCloud: A taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. International Journal of Systematic and Evolutionary Microbiology 67:1613-1617. https://doi.org/10.1099/ijsem.0.001755