ALGAE

  • 제38권4호
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  • Pages.253-264
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  • 2023
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  • 1226-2617(pISSN)
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  • 2093-0860(eISSN)
한국조류학회(藻類) (The Korean Society of Phycology)
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Novel rearrangements in the mitochondrial genomes of the Ceramiales (Rhodophyta) and evolutionary implications

  • Min Ho Seo (Department of Biological Sciences, Sungkyunkwan University) ;
  • Shin Chan Kang (Department of Biological Sciences, Sungkyunkwan University) ;
  • Kyeong Mi Kim (Department of Taxonomy and Systematics, National Marine Biodiversity Institute of Korea) ;
  • Min Seok Kwak (Department of Taxonomy and Systematics, National Marine Biodiversity Institute of Korea) ;
  • Jihoon Jo (Department of Biological Sciences, Sungkyunkwan University) ;
  • Han-Gu Choi (Division of Life Sciences, Korea Polar Research Institute) ;
  • Ga Hun Boo (Department of Biological Sciences, Sungkyunkwan University) ;
  • Hwan Su Yoon (Department of Biological Sciences, Sungkyunkwan University)
  • 투고 : 2023.10.30
  • 심사 : 2023.12.02
  • 발행 : 2023.12.21
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초록

The Ceramiales is the most diverse and species-rich group (2,669 spp.) of red algae, and it is widely distributed from tropical to polar oceans. Mitochondrial genomes (mitogenomes) and other genes have contributed to our knowledge regarding the classification and phylogeny of this diverse red algal group; however, the mitogenome architecture remains understudied. Here, we compared 42 mitogenomes, including 19 newly generated in this study, to expand our knowledge. The number of genes in mitogenome varied from 43 to 68 due to gene duplication. The mitogenome architecture was also variable, categorized into four types (A-D): type A = ancestral type with a basic composition; type B = those with inverse transpositions; type C = those with inverted duplications; and type D = those with both inversion and duplication. The palindromic and inverted repeats were consistently found in flanking regions of the rearrangement, especially near the cob and nad6 genes. The three rearranged mitogenome architectures (types B, C, D) are the first report of these in red algae. Phylogenetic analyses of 23 protein-coding genes supported the current familial classification of the Ceramiales, implying that the diversity of mitogenome architecture preceded the phylogenetic relationships. Our study suggests that palindromic and inverted repeats may drive mitogenome architectural variation.

키워드

과제정보

We thank to Robert A. Andersen for reading and providing valuable corrections in the first version of the manuscript. This work was supported by grants from the National Research Foundation of Korea (grant number NRF-2021R1I1A1A01049542, 2022R1A2B5B03002312, 20-22R1A5A1031361), the Cooperative Research Program for Agriculture Science and Technology Development (Project No. RS-2023-00231243), Rural Development Administration, Republic of Korea, and National Marine Biodiversity Institute of Korea Program (2023M00200).

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