Development and Reproduction (한국발생생물학회지:발생과생식)

The Korean Society of Developmental Biology (한국발생생물학회)
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Genetic Distances of Binary Pen Shell Atrina pectinata Populations

  • Yoon, Jong-Man (Department of Aquatic Life Medicine, College of Ocean Science and Technology, Kunsan National University)
  • Received : 2022.06.19
  • Accepted : 2022.09.06
  • Published : 2022.09.30
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Abstract

The seven oligonucleotides primers were consumed to produce the quantity of unique loci shared to each pen shell team (ULSEPT) and quantity of loci shared by the binary pen shell teams. 154 quantities of LSBPP, with a mediocre of 22.0 per primer, were noticed in the binary pen shell (Atrina pectinata) teams. 328 fragments were recognized in the pen shell team A (PSTA), and 257 in the pen shell team B (PSTB): 77 quantities of ULSEPT (23.48%) in the PSTA and 121 (47.08%) in the PSTB. The band-sharing amount (BS amount) between entity's no. 01 and no. 05 was the highest (0.884) between the binary PSTs. The median band-sharing amount of entities in the PSTA (0.685±0.011) was higher than in those invented from the PSTB (0.640±0.009) (p<0.05). The highest genetic distance presenting substantial molecular difference was between entities PECTINATA no. 06 and PECTINATA no. 04 (0.498). Through this study, it is possible a certain degree to contribute to increasing the cultivation of pen shells, conservation of species, protection of the natural environment, and preservation of ecosystems.

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References

  1. An HS, Kim BH, Lee JW, Dong CM, Kim SK, Kim YC (2011) Comparison between wild and hatchery populations of Korean pen shell (Atrina pectinata) using microsatellite DNA markers. Int J Mol Sci 12:6024-6039. https://doi.org/10.3390/ijms12096024
  2. Araneda C, Neira R, Iturra P (2005) Identification of a dominant SCAR marker associated with colour traits in coho salmon (Oncorhynchus kisutch). Aquaculture 247:67-73. https://doi.org/10.1016/j.aquaculture.2005.02.028
  3. Cha YJ, Kim EJ, Baek HH (1995) Processing of pen shell by-product hydrolysate using response surface methodology. Korean J Food Sci Technol 27:958-963.
  4. Choi WS, Yoon MC, Jo MR, Kwon JY, Kim JH, Lee HJ, Kim PH (2017) Heavy metal contents in internal organs and tissues of scallops Patinopecten yessoensis and comb pen shell Atrina pectinata. Korean J Fish Aquat Sci 50:487-493.
  5. Chung JS, Chung EY, Lee CH (2012) Gametogenic cycle and the number of spawning seasons by quantitative statistical analysis, and the size at 50% of group sexual maturity in Atrina (Servatrina) pectinata (Bivalvia: Pinnidae) in western Korea. Korean J Malacol 28:363-375. https://doi.org/10.9710/kjm.2012.28.4.363
  6. Diaz-Jaimes P, Uribe-Alcocer M (2003) Allozyme and RAPD variation in the eastern Pacific yellowfin tuna (Thunnus albacares). Fish Bull 101:769-777.
  7. Dixon BA, Shinn AP, Sommerville C (2004) Genetic characterization of populations of the ectoparasitic caligid, Lepeophtheirus salmonis (Kroyer 1837) using randomly amplified polymorphic DNA. Aquac Res 35:730-741. https://doi.org/10.1111/j.1365-2109.2004.01095.x
  8. Esselman EJ, Crawford DJ, Brauner S, Stuessy TF, Anderson GJ, Silva OM (2000) RAPD marker diversity within and divergence among species of Dendroseris (Asteraceae: Lactuceae). Am J Bot 87:591-596. https://doi.org/10.2307/2656603
  9. Fernandez-Tajes J, Gaspar M, Martinez-Patino D, McDonough N, Roberts D, Gonzalez-Tizon A, Martinez-Lage A, Josefina Mendez J (2007) Genetic variation of the razor clam Ensis siliqua (Jeffreys, 1875) along the European coast based on random amplified polymorphic DNA markers. Aquac Res 38:1205-1212. https://doi.org/10.1111/j.1365-2109.2007.01792.x
  10. Garcia G, Claramunt S, Lalanne A (2004) Genetic differentiation among annual fishes of the genus Cynolebias (Cyprinodontiformes, Rivuluidae) in a Biosphere Reserve site from Uruguay. Environ Biol Fishes 70:247-256. https://doi.org/10.1023/B:EBFI.0000033339.55585.f6
  11. Han EJ, Shin EJ, Kim KW, Ahn GN, Bae TJ (2020) Cytoprotective effect of a neutrase enzymatic hydrolysate derived from Korea pen shell Atrina pectinata against hydrogen peroxide: Induced oxidative damages in hepatocytes. Korean J Fish Aquat Sci 53:123-131.
  12. Henry LA, Kenchington ELR (2004) Ecological and genetic evidence for impaired sexual reproduction and induced clonality in the hydroid Sertularia cupressina (Cnidaria: Hydrozoa) on commercial scallop grounds in Atlantic Canada. Mar Biol 145:1107-1118. https://doi.org/10.1007/s00227-004-1400-0
  13. Huang BX, Peakall R, Hanna PJ (2000) Analysis of genetic structure of blacklip abalone (Haliotis rubra) populations using RAPD, minisatellite and microsatellite markers. Mar Biol 136:207-216. https://doi.org/10.1007/s002270050678
  14. Hwang YS, Hwang SM, Oh KS (2018) Development and quality characteristics of seasoned dried pen shell Atrina pectinata adductor. Korean J Fish Aquat Sci 51:632-639.
  15. Islam MS, Ahmed ASI, Azam MS, Alam MS (2005) Genetic analysis of three river populations of Catla catla (HAMILTON) using randomly amplified polymorphic DNAs markers. AsianAustralas J Anim Sci 18:453-457.
  16. Jeon JH, Yoon JM (2015) Genetic distances of three venerid species identified by PCR analysis. Korean J Malacol 31:257-262. https://doi.org/10.9710/kjm.2015.31.4.257
  17. Jo SG, Yoon JM (2021) Genetic distances between tailfin anchovy (Coilia nasus) populations analyzed by PCR. Dev Reprod 25:59-65. https://doi.org/10.12717/DR.2021.25.1.59
  18. Kang SK, Yoon JM (2013). Geographic variations of three Fulvia mutica populations analyzed by PCR. Korean J Malacol 29:163-169. https://doi.org/10.9710/kjm.2013.29.3.163
  19. Kim CW, Kwon SB, Hur SB (2007) Stock density and larval occurrence of pen shell Atrina pectinata in Deukryang bay. J Aquacult 20:232-238.
  20. Lee SJ, Min KS, Kim BG, An CM, Ju SM, Lee JS (2006) Gonad development and gametogenic cycle of the pen shell, Atrina pectinata (Bivalvia: Pinnidae). J Korean Fish Soc 39:398-403.
  21. Mahmoud N, Dellali M, El Bour M, Aissa P, Mahmoudi E (2010) The use of Fulvia fragilis (Mollusca: Cardiidae) in the biomonitoring of Bizerta lagoon: A multimarkers approach. Ecol Indic 10:696-701. https://doi.org/10.1016/j.ecolind.2009.11.010
  22. McCormack GP, Powell R, Keegan B (2000) Comparative analysis of two populations of the brittle star Amphiura filiformis (Echinodermata: Ophiuroidae) with different life history strategies using RAPD markers. Mar Biotechnol 2:100-106. https://doi.org/10.1007/s101269900013
  23. Min DK (2001) Korea mollusks with color illustration. Seoul, Korea: Min shell house, p 225.
  24. Nagarajan M, Haniffa MA, Gopalakrishnan A, Basheer VS, Muneer A (2006) Genetic variability of Channa punctatus populations using randomly amplified polymorphic DNA. Aquac Res 37:1151-1155. https://doi.org/10.1111/j.1365-2109.2006.01539.x
  25. Siti Azizah MN, Ruzainah A, Patimah I (2005) Development of RAPD markers in the eel-loach (Pangio spp.) for genetic discrimination and monitoring of wild and cultured populations. World Aquac 36:37-43.
  26. Toro JE, Ojeda JA, Vergara AM (2004) The genetic structure of Mytilus chilensis (Hupe, 1854) populations along the Chilean coast based on RAPDs analysis. Aquac Res 35:1466-1471. https://doi.org/10.1111/j.1365-2109.2004.01172.x
  27. Upadhyay SK, Wang J, Su YQ, Ding SX, Sonal C (2006) Genetic diversity of yellow grouper (Epinephelus awoara) determined by random amplified polymorphic DNA (RAPD) analysis. Fish Bull 104:638-642.
  28. Wang CH, Li SF (2004) Phylogenetic relationships of ornamental (koi) carp, Oujiang color carp and long-fin carp revealed by mitochondrial DNA COII gene sequences and RAPD analysis. Aquaculture 231:83-91. https://doi.org/10.1016/j.aquaculture.2003.10.040
  29. Wasko AP, Martins C, Oliveira C, Senhorini JA, Foresti F (2004) Genetic monitoring of the Amazonian fish matrincha (Brycon cephalus) using RAPD markers: Insights into supportive breeding and conservation programs. J Appl Ichthyology 20:48-52. https://doi.org/10.1111/j.1439-0426.2004.00479.x
  30. Yoke-Kqueen C, Radu S (2006) Random amplified polymorphic DNA analysis of genetically modified organisms. J Biotechnol 127:161-166. https://doi.org/10.1016/j.jbiotec.2006.06.001
  31. Yoo SK, Lim HS, Ryu HY, Kang KH (1988) Improvement of the seed production method of the pen shell: The occurrence of larvae and the early growth of the spat. Bull Korean Fish Soc 21:206-216.
  32. Yoo SK, Yoo MS (1984) Studies on the pen shell culture development (I): Reproductive ecology of pen shell in Yoja bay. Bull Korean Fish Soc 17:529-535.
  33. Yoon JM (2022) PCR analysis for genetic distances of two Charybdis crab populations. Dev Reprod 26:91-98. https://doi.org/10.12717/DR.2022.26.2.91