Acknowledgement
This work was supported by the Korea Institute of Planning and Evaluation for Technology in Food, Agriculture and Forestry (IPET) through the Agriculture, Food and Rural Affairs Convergence Technologies Program for Educating Creative Global Leader, funded by the Ministry of Agriculture, Food and Rural Affairs (MAFRA; 716002-7).
References
- Dziva F, Stevens MP. Colibacillosis in poultry: unravelling the molecular basis of virulence of avian pathogenic Escherichia coli in their natural hosts. Avian Pathol. 2008;37(4):355-366. https://doi.org/10.1080/03079450802216652
- Jeong YW, Kim TE, Kim JH, Kwon HJ. Pathotyping avian pathogenic Escherichia coli strains in Korea. J Vet Sci. 2012;13(2):145-152. https://doi.org/10.4142/jvs.2012.13.2.145
- Kwon HJ, Seong WJ, Kim JH. Molecular prophage typing of avian pathogenic Escherichia coli. Vet Microbiol. 2013;162(2-4):785-792. https://doi.org/10.1016/j.vetmic.2012.10.005
- Sola-Gines M, Cameron-Veas K, Badiola I, Dolz R, Majo N, Dahbi G, et al. Diversity of multi-drug resistant avian pathogenic Escherichia coli (APEC) Causing outbreaks of colibacillosis in broilers during 2012 in Spain. PLoS One. 2015;10(11):e0143191. https://doi.org/10.1371/journal.pone.0143191
- Ozaki H, Matsuoka Y, Nakagawa E, Murase T. Characteristics of Escherichia coli isolated from broiler chickens with colibacillosis in commercial farms from a common hatchery. Poult Sci. 2017;96(10):3717-3724. https://doi.org/10.3382/ps/pex167
- Roth N, Kasbohrer A, Mayrhofer S, Zitz U, Hofacre C, Domig KJ. The application of antibiotics in broiler production and the resulting antibiotic resistance in Escherichia coli: a global overview. Poult Sci. 2019;98(4):1791-1804. https://doi.org/10.3382/ps/pey539
- Adator EH, Walker M, Narvaez-Bravo C, Zaheer R, Goji N, Cook SR, et al. Whole genome sequencing differentiates presumptive extended spectrum beta-lactamase producing Escherichia coli along segments of the one health continuum. Microorganisms. 2020;8(3):E448.
- Carattoli A, Villa L, Fortini D, Garcia-Fernandez A. Contemporary IncI1 plasmids involved in the transmission and spread of antimicrobial resistance in Enterobacteriaceae. Plasmid. 2021;118:102392. https://doi.org/10.1016/j.plasmid.2018.12.001
- Quainoo S, Coolen JP, van Hijum SA, Huynen MA, Melchers WJ, van Schaik W, et al. Whole-genome sequencing of bacterial pathogens: the future of nosocomial outbreak analysis. Clin Microbiol Rev. 2017;30(4):1015-1063. https://doi.org/10.1128/CMR.00016-17
- Kim YB, Yoon MY, Ha JS, Seo KW, Noh EB, Son SH, et al. Molecular characterization of avian pathogenic Escherichia coli from broiler chickens with colibacillosis. Poult Sci. 2020;99(2):1088-1095. https://doi.org/10.1016/j.psj.2019.10.047
- Clinical and Laboratory Standards Institute. Clinical and Laboratory Standards Institute Standards Development Policies and Process [Internet]. Wayne: Clinical and Laboratory Standards Institute; https://clsi.org/media/1711/clsistandardsdevelopmentpoliciesandprocessesfinal.pdf. Updated 2013. Accessed 2020 Oct 1.
- Pitout JD, Hossain A, Hanson ND. Phenotypic and molecular detection of CTX-M-β-lactamases produced by Escherichia coli and Klebsiella spp. J Clin Microbiol. 2004;42(12):5715-5721. https://doi.org/10.1128/JCM.42.12.5715-5721.2004
- Brinas L, Zarazaga M, Saenz Y, Ruiz-Larrea F, Torres C. β-lactamases in ampicillin-resistant Escherichia coli isolates from foods, humans, and healthy animals. Antimicrob Agents Chemother. 2002;46(10):3156-3163. https://doi.org/10.1128/AAC.46.10.3156-3163.2002
- Zhang J, Zheng B, Zhao L, Wei Z, Ji J, Li L, et al. Nationwide high prevalence of CTX-M and an increase of CTX-M-55 in Escherichia coli isolated from patients with community-onset infections in Chinese county hospitals. BMC Infect Dis. 2014;14(1):659. https://doi.org/10.1186/s12879-014-0659-0
- Tadesse DA, Li C, Mukherjee S, Hsu CH, Bodeis Jones S, Gaines SA, et al. Whole-genome sequence analysis of CTX-M containing Escherichia coli isolates from retail meats and cattle in the United States. Microb Drug Resist. 2018;24(7):939-948. https://doi.org/10.1089/mdr.2018.0206
- Tamang MD, Nam HM, Gurung M, Jang GC, Kim SR, Jung SC, et al. Molecular characterization of CTX-M β-lactamase and associated addiction systems in Escherichia coli circulating among cattle, farm workers, and the farm environment. Appl Environ Microbiol. 2013;79(13):3898-3905. https://doi.org/10.1128/AEM.00522-13
- Hayashi W, Ohsaki Y, Taniguchi Y, Koide S, Kawamura K, Suzuki M, et al. High prevalence of blaCTX-M-14 among genetically diverse Escherichia coli recovered from retail raw chicken meat portions in Japan. Int J Food Microbiol. 2018;284(August):98-104. https://doi.org/10.1016/j.ijfoodmicro.2018.08.003
- Hoang TA, Nguyen TN, Ueda S, Le QP, Tran TT, Nguyen TN, et al. Common findings of blaCTX-M-55-encoding 104-139 kbp plasmids harbored by extended-spectrum β-lactamase-producing Escherichia coli in pork meat, wholesale market workers, and patients with urinary tract infection in Vietnam. Curr Microbiol. 2017;74(2):203-211. https://doi.org/10.1007/s00284-016-1174-x
- Bennett PM. Plasmid encoded antibiotic resistance: acquisition and transfer of antibiotic resistance genes in bacteria. Br J Pharmacol. 2008;153(Suppl 1):S347-S357. https://doi.org/10.1038/sj.bjp.0707607
- Cormier A, Zhang PL, Chalmers G, Weese JS, Deckert A, Mulvey M, et al. Diversity of CTX-M-positive Escherichia coli recovered from animals in Canada. Vet Microbiol. 2019;231(February):71-75. https://doi.org/10.1016/j.vetmic.2019.02.031
- Agyepong N, Govinden U, Owusu-Ofori A, Amoako DG, Allam M, Janice J, et al. Genomic characterization of multidrug-resistant ESBL-producing Klebsiella pneumoniae isolated from a Ghanaian teaching hospital. Int J Infect Dis. 2019;85(85):117-123. https://doi.org/10.1016/j.ijid.2019.05.025
- Rozwandowicz M, Brouwer MS, Fischer J, Wagenaar JA, Gonzalez-Zorn B, Guerra B, et al. Plasmids carrying antimicrobial resistance genes in Enterobacteriaceae. J Antimicrob Chemother. 2018;73(5):1121-1137. https://doi.org/10.1093/jac/dkx488
- Leverstein-van Hall MA, Dierikx CM, Cohen Stuart J, Voets GM, van den Munckhof MP, van Essen-Zandbergen A, et al. Dutch patients, retail chicken meat and poultry share the same ESBL genes, plasmids and strains. Clin Microbiol Infect. 2011;17(6):873-880. https://doi.org/10.1111/j.1469-0691.2011.03497.x
- Coburn PS, Baghdayan AS, Dolan GT, Shankar N. Horizontal transfer of virulence genes encoded on the Enterococcus faecalis pathogenicity island. Mol Microbiol. 2007;63(2):530-544. https://doi.org/10.1111/j.1365-2958.2006.05520.x
- Vidana R, Rashid MU, Ozenci V, Weintraub A, Lund B. The origin of endodontic Enterococcus faecalis explored by comparison of virulence factor patterns and antibiotic resistance to that of isolates from stool samples, blood cultures and food. Int Endod J. 2016;49(4):343-351. https://doi.org/10.1111/iej.12464
- Guabiraba R, Schouler C. Avian colibacillosis: still many black holes. FEMS Microbiol Lett. 2015;362(15):fnv118. https://doi.org/10.1093/femsle/fnv118
- Huang J, Ma S, Yu Q, Fu M, Shao L, Shan X, et al. Whole genome sequence of an Escherichia coli ST410 isolate co-harbouring blaNDM-5, blaOXA-1, blaCTX-M-15, blaCMY-2, aac(3)-IIa and aac(6')-Ib-cr genes isolated from a patient with bloodstream infection in China. J Glob Antimicrob Resist. 2019;19:354-355. https://doi.org/10.1016/j.jgar.2019.10.027
- Roer L, Overballe-Petersen S, Hansen F, Schonning K, Wang M, Roder BL, et al. Escherichia coli sequence type 410 is causing new international high-risk clones. MSphere. 2018;3(4):e00337-18.
- Zurita J, Yanez F, Sevillano G, Ortega-Paredes D, Paz Y Mino A. Ready-to-eat street food: a potential source for dissemination of multidrug-resistant Escherichia coli epidemic clones in Quito, Ecuador. Lett Appl Microbiol. 2020;70(3):203-209. https://doi.org/10.1111/lam.13263
- Guzman-Otazo J, Gonzales-Siles L, Poma V, Bengtsson-Palme J, Thorell K, Flach CF, et al. Diarrheal bacterial pathogens and multi-resistant enterobacteria in the Choqueyapu River in La Paz, Bolivia. PLoS One. 2019;14(1):e0210735. https://doi.org/10.1371/journal.pone.0210735