Acknowledgement
The authors appreciate the support from the Department of Animal Science, National Chung Hsing University and Department of Veterinary Medicine, School of Veterinary Medicine, National Taiwan University.
References
- Roan SW, Fang WB, Hu CL, Wang BY. Carcase composition of taiwan simulated native chickens. Trop Anim Health Prod 1999;31:245-57. https://doi.org/10.1023/a:1005271211738
- Diaz Carrasco JM, Casanova NA, Fernandez Miyakawa ME. Microbiota, gut health and chicken productivity: What is the connection? Microorganisms 2019;7:374. https://doi.org/10.3390/microorganisms7100374
- Jha R, Das R, Oak S, Mishra P. Probiotics (direct-fed microbials) in poultry nutrition and their effects on nutrient utilization, growth and laying performance, and gut health: A systematic review. Animals (Basel) 2020;10:1863. https://doi.org/10.3390/ani10101863
- Abd El-Hack ME, El-Saadony MT, Shafi ME, et al. Probiotics in poultry feed: A comprehensive review. J Anim Physiol Anim Nutr (Berl) 2020;104:1835-50. https://doi.org/10.1111/jpn.13454
- Cao GT, Zhan XA, Zhang LL, Zeng XF, Chen AG, Yang CM. Modulation of broilers' caecal microflora and metabolites in response to a potential probiotic bacillus amyloliquefaciens. J Anim Physiol Anim Nutr (Berl) 2018;102:e909-e17. https://doi.org/10.1111/jpn.12856
- Hong Y, Cheng Y, Li Y, et al. Preliminary study on the effect of bacillus amyloliquefaciens tl on cecal bacterial community structure of broiler chickens. Biomed Res Int 2019;2019: Article ID 5431354. https://doi.org/10.1155/2019/5431354
- Li Y, Zhang H, Chen YP, et al. Bacillus amyloliquefaciens supplementation alleviates immunological stress in lipopolysaccharide-challenged broilers at early age. Poult Sci 2015;94:1504-11. https://doi.org/10.3382/ps/pev124
- Hong Y, Cheng Y, Li Y, et al. Preliminary study on the effect of bacillus amyloliquefaciens tl on cecal bacterial community structure of broiler chickens. Biomed Res Int 2019;2019:5431354. https://doi.org/10.1155/2019/5431354
- Jerzsele A, Szeker K, Csizinszky R, et al. Efficacy of protected sodium butyrate, a protected blend of essential oils, their combination, and bacillus amyloliquefaciens spore suspension against artificially induced necrotic enteritis in broilers. Poult Sci 2012;91:837-43. https://doi.org/10.3382/ps.2011-01853
- Ezema C, Ugwu CC. Yeast (saccharomyces cerevisiae) as a probiotic of choice for broiler production. In: Liong M-T, editor. Beneficial microorganisms in agriculture, aquaculture and other areas. Cham, Switzerland: Springer International Publishing; 2015. p. 59-79.
- Yang Y, Iji PA, Kocher A, Mikkelsen LL, Choct M. Effects of dietary mannanoligosaccharide on growth performance, nutrient digestibility and gut development of broilers given different cereal-based diets. J Anim Physiol Anim Nutr (Berl) 2008;92:650-9. https://doi.org/10.1111/j.1439-0396.2007.00761.x
- Froebel LK, Jalukar S, Lavergne TA, Lee JT, Duong T. Administration of dietary prebiotics improves growth performance and reduces pathogen colonization in broiler chickens. Poult Sci 2019;98:6668-76. https://doi.org/10.3382/ps/pez537
- Agus A, Planchais J, Sokol H. Gut microbiota regulation of tryptophan metabolism in health and disease. Cell Host Microbe 2018;23:716-24. https://doi.org/10.1016/j.chom.2018.05.003
- Yeoman CJ, Chia N, Jeraldo P, Sipos M, Goldenfeld ND, White BA. The microbiome of the chicken gastrointestinal tract. Anim Health Res Rev 2012;13:89-99. https://doi.org/10.1017/s1466252312000138
- Timmerman HM, Koning CJM, Mulder L, Rombouts FM, Beynen AC. Monostrain, multistrain and multispecies probiotics--a comparison of functionality and efficacy. Int J Food Microbiol 2004;96:219-33. https://doi.org/10.1016/j.ijfoodmicro.2004.05.012
- Lei X, Piao X, Ru Y, Zhang H, Peron A, Zhang H. Effect of bacillus amyloliquefaciens-based direct-fed microbial on performance, nutrient utilization, intestinal morphology and cecal microflora in broiler chickens. Asian-Australas J Anim Sci 2015;28:239-46. https://doi.org/10.5713/ajas.14.0330
- Zhang AW, Lee BD, Lee SK, et al. Effects of yeast (saccharomyces cerevisiae) cell components on growth performance, meat quality, and ileal mucosa development of broiler chicks. Poult Sci 2005;84:1015-21. https://doi.org/10.1093/ps/84.7.1015
- Markowiak P, Slizewska K, Nowak A, et al. Probiotic microorganisms detoxify ochratoxin a in both a chicken liver cell line and chickens. J Sci Food Agric 2019;99:4309-18. https://doi.org/10.1002/jsfa.9664
- Chen KL, Kho WL, You SH, Yeh RH, Tang SW, Hsieh CW. Effects of bacillus subtilis var. Natto and saccharomyces cerevisiae mixed fermented feed on the enhanced growth performance of broilers. Poult Sci 2009;88:309-15. https:// doi.org/10.3382/ps.2008-00224
- Wilson FD, Cummings TS, Barbosa TM, Williams CJ, Gerard PD, Peebles ED. Comparison of two methods for determination of intestinal villus to crypt ratios and documentation of early age-associated ratio changes in broiler chickens. Poult Sci 2018;97:1757-61. https://doi.org/10.3382/ps/pex349
- Aliakbarpour HR, Chamani M, Rahimi G, Sadeghi AA, Qujeq D. The bacillus subtilis and lactic acid bacteria probiotics influences intestinal mucin gene expression, histomorphology and growth performance in broilers. Asian-Australas J Anim Sci 2012;25:1285-93. https://doi.org/10.5713/ajas.2012.12110
- Caspary WF. Physiology and pathophysiology of intestinal absorption. Am J Clin Nutr 1992;55:299s-308s. https://doi.org/10.1093/ajcn/55.1.299s
- Langhout DJ, Schutte JB, Van Leeuwen P, Wiebenga J, Tamminga S. Effect of dietary high- and low-methylated citrus pectin on the activity of the ileal microflora and morphology of the small intestinal wall of broiler chicks. Br Poult Sci 1999;40:340-7. https://doi.org/10.1080/00071669987421
- Prakatur I, Miskulin M, Pavic M, et al. Intestinal morphology in broiler chickens supplemented with propolis and bee pollen. Animals (Basel) 2019;9:301. https://doi.org/10.3390/ani9060301
- Oakley BB, Lillehoj HS, Kogut MH, et al. The chicken gastrointestinal microbiome. FEMS Microbiol Lett 2014;360:100-12. https://doi.org/10.1111/1574-6968.12608
- Mancabelli L, Ferrario C, Milani C, et al. Insights into the biodiversity of the gut microbiota of broiler chickens. Environ Microbiol 2016;18:4727-38. https://doi.org/10.1111/1462-2920.13363
- Abdallah Ismail N, Ragab SH, Abd Elbaky A, Shoeib ARS, Alhosary Y, Fekry D. Frequency of firmicutes and bacteroidetes in gut microbiota in obese and normal weight egyptian children and adults. Arch Med Sci 2011;7:501-7. https://doi.org/10.5114/aoms.2011.23418
- Salaheen S, Kim SW, Haley BJ, Van Kessel JAS, Biswas D. Alternative growth promoters modulate broiler gut microbiome and enhance body weight gain. Front Microbiol 2017;8:2088. https://doi.org/10.3389/fmicb.2017.02088
- Manichanh C, Rigottier-Gois L, Bonnaud E, et al. Reduced diversity of faecal microbiota in crohn's disease revealed by a metagenomic approach. Gut 2006;55:205-11. https://doi.org/10.1136/gut.2005.073817
- Jayaraman S, Thangavel G, Kurian H, Mani R, Mukkalil R, Chirakkal H. Bacillus subtilis pb6 improves intestinal health of broiler chickens challenged with clostridium perfringensinduced necrotic enteritis. Poult Sci 2013;92:370-4. https://doi.org/10.3382/ps.2012-02528
- Ubeda C, Bucci V, Caballero S, et al. Intestinal microbiota containing barnesiella species cures vancomycin-resistant enterococcus faecium colonization. Infect Immun 2013;81:965-73. https://doi.org/10.1128/iai.01197-12
- Presley LL, Wei B, Braun J, Borneman J. Bacteria associated with immunoregulatory cells in mice. Appl Environ Microbiol 2010;76:936-41. https://doi.org/10.1128/aem.01561-09
- Weiss GA, Chassard C, Hennet T. Selective proliferation of intestinal barnesiella under fucosyllactose supplementation in mice. Br J Nutr 2014;111:1602-10. https://doi.org/10.1017/s0007114513004200
- Zhang L, Wu W, Lee YK, Xie J, Zhang H. Spatial heterogeneity and co-occurrence of mucosal and luminal microbiome across swine intestinal tract. Front Microbiol 2018;9:48. https://doi.org/10.3389/fmicb.2018.00048
- Du CT, Gao W, Ma K, et al. Microrna-146a deficiency protects against listeria monocytogenes infection by modulating the gut microbiota. Int J Mol Sci 2018;19:993. https://doi.org/10.3390/ijms19040993
- Jiang X, Lu N, Zhao H, Yuan H, Xia D, Lei H. The microbiomemetabolome response in the colon of piglets under the status of weaning stress. Front Microbiol 2020;11:2055. https://doi.org/10.3389/fmicb.2020.02055
- Xiong X, Zhou J, Liu H, Tang Y, Tan B, Yin Y. Dietary lysozyme supplementation contributes to enhanced intestinal functions and gut microflora of piglets. Food Funct 2019;10:1696-706. https://doi.org/10.1039/c8fo02335b
- Wang W, Wang Y, Hao X, et al. Dietary fermented soybean meal replacement alleviates diarrhea in weaned piglets challenged with enterotoxigenic escherichia coli k88 by modulating inflammatory cytokine levels and cecal microbiota composition. BMC Vet Res 2020;16:245. https://doi.org/10.1186/s12917-020-02466-5
- Fu X, Liu Z, Zhu C, Mou H, Kong Q. Nondigestible carbohydrates, butyrate, and butyrate-producing bacteria. Crit Rev Food Sci Nutr 2019;59:S130-52. https://doi.org/10.1080/10408398.2018.1542587
- Lee H, Lee Y, Kim J, et al. Modulation of the gut microbiota by metformin improves metabolic profiles in aged obese mice. Gut Microbes 2018;9:155-65. https://doi.org/10.1080/19490976.2017.1405209
- Hooper LV, Midtvedt T, Gordon JI. How host-microbial interactions shape the nutrient environment of the mammalian intestine. Annu Rev Nutr 2002;22:283-307. https://doi.org/10.1146/annurev.nutr.22.011602.092259
- Niu J, Zhang J, Wei L, Ma X, Zhang W, Nie C. Cottonseed meal fermented by candida tropical reduces the fat deposition in white-feather broilers through cecum bacteria-host metabolic cross-talk. Appl Microbiol Biotechnol 2020;104:4345-57. https://doi.org/10.1007/s00253-020-10538-7
- Gao X, Chang S, Liu S, et al. Correlations between α-linolenic acid-improved multitissue homeostasis and gut microbiota in mice fed a high-fat diet. mSystems 2020;5:e00391-20. https://doi.org/10.1128/mSystems.00391-20
- Hippe H, Hagelstein A, Kramer I, Swiderski J, Stackebrandt E. Phylogenetic analysis of formivibrio citricus, propionivibrio dicarboxylicus, anaerobiospirillum thomasii, succinimonas amylolytica and succinivibrio dextrinosolvens and proposal of succinivibrionaceae fam. Nov. Int J Syst Bacteriol 1999;49:779-82. https://doi.org/10.1099/00207713-49-2-779
- Morotomi M, Nagai F, Watanabe Y, Tanaka R. Succinatimonas hippei gen. Nov., sp. Nov., isolated from human faeces. Int J Syst Evol Microbiol 2010;60:1788-93. https://doi.org/10.1099/ijs.0.015958-0
- Li M, Wang B, Zhang M, et al. Symbiotic gut microbes modulate human metabolic phenotypes. Proc Natl Acad Sci USA 2008;105:2117-22. https://doi.org/10.1073/pnas.0712038105
- Martinez B, Rodriguez A, Kulakauskas S, Chapot-Chartier MP. Cell wall homeostasis in lactic acid bacteria: Threats and defences. FEMS Microbiol Rev 2020;44:538-64. https://doi.org/10.1093/femsre/fuaa021
- van Baarlen P, Wells JM, Kleerebezem M. Regulation of intestinal homeostasis and immunity with probiotic lactobacilli. Trends Immunol 2013;34:208-15. https://doi.org/10.1016/j.it.2013.01.005
- RajBhandary UL, Soll D. Aminoacyl-trnas, the bacterial cell envelope, and antibiotics. Proc Natl Acad Sci USA 2008;105:5285-6. https://doi.org/10.1073/pnas.0801193105
- Shepherd J, Ibba M. Lipid ii-independent trans editing of mischarged trnas by the penicillin resistance factor murm. J Biol Chem 2013;288:25915-23. https://doi.org/10.1074/jbc.M113.479824
- Jager M, Blokzijl F, Kuijk E, et al. Deficiency of nucleotide excision repair is associated with mutational signature observed in cancer. Genome Res 2019;29:1067-77. https://doi.org/10.1101/gr.246223.118
- Scharer OD. Nucleotide excision repair in eukaryotes. Cold Spring Harb Perspect Biol 2013;5:a012609. https://doi.org/10.1101/cshperspect.a012609