과제정보
This work was carried out with the support of the National Institute of Agricultural Sciences (Project No. PJ01679902), Rural Development Administration, Republic of Korea.
참고문헌
- Bhat, K. A., Masood, S. D., Bhat, N. A., Bhat, M. A., Razvi, S. M., Mir, M. R., Akhtar S. and Habib, M. 2010. Current status of post harvest soft rot in vegetables: a review. Asian J. Plant Sci. 9:200-208. https://doi.org/10.3923/ajps.2010.200.208
- Bustin, S. A. 2008. Molecular medicine, gene-expression profiling and molecular diagnostics: putting the cart before the horse. Biomarkers Med. 2: 201-207. https://doi.org/10.2217/17520363.2.3.201
- Charkowski, A. O. 2018. The changing face of bacterial soft-rot diseases. Annu. Rev. Phytopathol. 56:269-288. https://doi.org/10.1146/annurev-phyto-080417-045906
- Chen, J., Zhang, L., Paoli, G. C., Shi, C., Tu, S.-I. and Shi, X. 2010. A real-time PCR method for the detection of Salmonella enterica from food using a target sequence identified by comparative genomic analysis. Int. J. Food Microbiol. 137:168-174. https://doi.org/10.1016/j.ijfoodmicro.2009.12.004
- Czajkowski, R., Perombelon, M., Jafra, S., Lojkowska, E., Potrykus, M., Van der Wolf, J. and Sledz, W. 2015. Detection, identification and differentiation of Pectobacterium and Dickeya species causing potato blackleg and tuber soft rot: a review. Ann. Appl. Biol. 166:18-38. https://doi.org/10.1111/aab.12166
- Gallois, A., Samson, R., Ageron, E. and Grimont, P. A. D. 1992. Erwinia carotovora subsp. odorifera subsp. nov., associated with odorous soft rot of chicory (Cichorium intybus L.). Int. J. Syst. Evol. Microbiol. 42:582-588.
- Gao, B., Wang, R. Y., Chen, S. L., Ma, J. and Li, X. H. 2016. First report of Pectobacterium carotovorum subsp. carotovorum and P. carotovorum subsp. odoriferum causing bacterial soft rot of sweetpotato in China. Plant Dis. 100:1776.
- Glasner, J. D., Marquez-Villavicencio, M., Kim, H.-S., Jahn, C. E., Ma, B., Biehl, B. S., Rissman, A. I., Mole, B., Yi, X., Yang, C.-H., Dangl, J. L., Grant, S. R., Perna, N. T. and Charkowski, A. O. 2008. Niche-specificity and the variable fraction of the Pectobacterium pan-genome. Mol. Plant-Microbe Interact. 21:1549-1560. https://doi.org/10.1094/MPMI-21-12-1549
- Jee, S., Choi, J.-G., Lee, Y.-G., Kwon, M., Hwang, I. and Heu, S. 2020. Distribution of Pectobacterium species isolated in South Korea and comparison of temperature effects on pathogenicity. Plant Pathol. J. 36:346-354. https://doi.org/10.5423/PPJ.OA.09.2019.0235
- Kang, B. K., Cho, M. S. and Park, D. S. 2016. Red pepper powder is a crucial factor that influences the ontogeny of Weissella cibaria during Kimchi fermentation. Sci. Rep. 6:28232.
- Kettani-Halabi, M., Terta, M., Amdan, M., El Fahime, E. M., Bouteau, F. and Ennaji, M. M. 2013. An easy, simple inexpensive test for the specific detection of Pectobacterium carotovorum subsp. carotovorum based on sequence analysis of the pmrA gene. BMC Microbiol. 13:176.
- Kim, B.-S. and Yeoung, Y.-R. 2004. Suppression of bacterial soft rot on Chinease cabbage by calcium fertilizer treatment. Res. Plant Dis. 10:82-85. https://doi.org/10.5423/RPD.2004.10.1.082
- Koonin, E. V. and Tatusov, R. L. 1994. Computer analysis of bacterial haloacid dehalogenases defines a large superfamily of hydrolases with diverse specificity: application of an iterative approach to database search. J. Mol. Biol. 244:125-132. https://doi.org/10.1006/jmbi.1994.1711
- Lang, J. M., Hamilton, J. P., Diaz, M. G. Q., Van Sluys, M. A., Burgos, M. R. G., Vera Cruz, C. M., Buell, C. R., Tisserat, N. A. and Leach, J. E. 2010. Genomics-based diagnostic marker development for Xanthomonas oryzae pv. oryzae and X. oryzae pv. oryzicola. Plant Dis. 94:311-319. https://doi.org/10.1094/pdis-94-3-0311
- Lee, D. H., Kim, J.-B., Lim, J.-A, Han, S.-W. and Heu, S. 2014. Genetic diversity of Pectobacterium carotovorum subsp. brasiliensis isolated in Korea. Plant Pathol. J. 30:117-124. https://doi.org/10.5423/PPJ.OA.12.2013.0117
- Lee, S. G., Kim, S. K., Lee, H. J., Choi, C. S. and Park, S. T. 2016. Impacts of climate change on the growth, morphological and physiological responses, and yield of Kimchi cabbage leaves. Hortic. Environ. Biotechnol. 57:470-477. https://doi.org/10.1007/s13580-016-1163-9
- Li, X., Fu, L., Chen, C., Sun, W., Tian, Y. and Xie, H. 2020. Characteristics and rapid diagnosis of Pectobacterium carotovorum ssp. associated with bacterial soft rot of vegetables in China. Plant Dis. 104:1158-1166. https://doi.org/10.1094/pdis-05-19-1033-re
- Ma, B., Hibbing, M. E., Kim, H.-S., Reedy, R. M., Yedidia, I., Breuer, J., Breuer, J., Glasner, J. D., Perna, N. T., Kelman, A. and Charkowski, A. O. 2007. Host range and molecular phylogenies of the soft rot enterobacterial genera Pectobacterium and Dickeya. Phytopathology 97:1150-1163. https://doi.org/10.1094/PHYTO-97-9-1150
- Moussa, H. B., Pedron, J., Bertrand, C., Hecquet, A. and Barny, M.-A. 2021. Pectobacterium quasiaquaticum sp. nov., isolated from waterways. Int. J. Syst. Evol. Microbiol. 71:005042.
- Muzhinji, N., Dube, J. P., de Haan, E. G., Woodhall, J. W. and van der Waals, J. E. 2020. Development of a TaqMan PCR assay for specific detection and quantification of Pectobacterium brasiliense in potato tubers and soil. Eur. J. Plant Pathol. 158:521-532. https://doi.org/10.1007/s10658-020-02097-4
- Nabhan, S., Wydra, K., Linde, M. and Debener, T. 2012. The use of two complementary DNA assays, AFLP and MLSA, for epidemic and phylogenetic studies of pectolytic enterobacterial strains with focus on the heterogeneous species Pectobacterium carotovorum. Plant Pathol. 61:498-508. https://doi.org/10.1111/j.1365-3059.2011.02546.x
- Naum, M., Brown, E. W. and Mason-Gamer, R. J. 2008. Is 16S rDNA a reliable phylogenetic marker to characterize relationships below the family level in the Enterobacteriaceae? J. Mol. Evol. 66:630-642. https://doi.org/10.1007/s00239-008-9115-3
- Oskiera, M., Kaluzna, M., Kowalska, B. and Smolinska, U. 2017. Pectobacterium carotovorum subsp. odoriferum on cabbage and Chinese cabbage: identification, characterization and taxonomic relatedness of bacterial soft rot causal agents. J. Plant Pathol. 99:149-160.
- Park, D. H., Kim, J. S., Lee, H. G., Hahm, Y. and Lim, C. K. 1999. Black leg of potato plants by Erwinia carotovora subsp. atroseptica. Plant Dis. Agric. 5:64-66.
- Pasanen, M., Waleron, M., Schott, T., Cleenwerck, I., Misztak, A., Waleron, K., Pritchard, L., Bakr, R., Degefu, Y., van der Wolf, J., Vandamme, P. and Pirhonen, M. 2020. Pectobacterium parvum sp. nov., having a Salmonella SPI-1-like Type III secretion system and low virulence. Int. J. Syst. Evol. Microbiol. 70:2440-2448. https://doi.org/10.1099/ijsem.0.004057
- Perombelon, M. C. M. and Kelman, A. 1980. Ecology of the soft rot Erwinias. Annu. Rev. Phytopathol. 18:361-387. https://doi.org/10.1146/annurev.py.18.090180.002045
- Portier, P., Pedron, J., Taghouti, G., Dutrieux, C. and Barny, M.-A. 2020. Updated taxonomy of Pectobacterium genus in the CIRM-CFBP bacterial collection: when newly described species reveal "old" endemic population. Microorganisms 8:1441.
- Portier, P., Pedron, J., Taghouti, G., Fischer-Le Saux, M., Caullireau, E., Bertrand, C., Laurent, A., Chawki, K., Oulgazi, S., Moumni, M., Andrivon, D., Dutrieux, C., Faure, D., Helias, V. and Barny, M.-A. 2019. Elevation of Pectobacterium carotovorum subsp. odoriferum to species level as Pectobacterium odoriferum sp. nov., proposal of Pectobacterium brasiliense sp. nov. and Pectobacterium actinidiae sp. nov., emended description of Pectobacterium carotovorum and description of Pectobacterium versatile sp. nov., isolated from streams and symptoms on diverse plants. Int. J. Syst. Evol. Microbiol. 69:3207-3216. https://doi.org/10.1099/ijsem.0.003611
- Roh, E., Lee, S., Lee, Y., Ra, D., Choi, J., Moon, E. and Heu, S. 2009. Diverse antibacterial activity of Pectobacterium carotovorum subsp. carotovorum isolated in Korea. J. Microbiol. Biotechnol. 19: 42-50.
- Seo, S.-T., Koo, J.-H., Hur, J.-H. and Lim, C.-K. 2004. Characterization of Korean Erwinia carotovora strains from potato and Chinese cabbage. Plant Pathol. J. 20:283-288. https://doi.org/10.5423/PPJ.2004.20.4.283
- Staley, J. T. 2006. The bacterial species dilemma and the genomic-phylogenetic species concept. Philos. Trans. R. Soc. Lond. B Biol. Sci. 361:1899-1909. https://doi.org/10.1098/rstb.2006.1914
- Suarez, M. B., Diego, M., Feria, F. J., Martin-Robles, M. J., Moreno, S. and Palomo, J. L. 2022. New PCR-based assay for the identification of Pectobacterium carotovorum causing potato soft rot. Plant Dis. 106:676-684. https://doi.org/10.1094/PDIS-08-21-1676-RE
- Waleron, M., Waleron, K. and Lojkowska, E. 2014. Charaterization of Pectobacterium carotovorum subsp. odoriferum causing soft rot of stored vegetables. Eur. J. Plant Pathol. 139:457-469. https://doi.org/10.1007/s10658-014-0403-z
- Whelan, J. A., Russel, N. B. and Whelan, M. A. 2003. A method for the absolute quantification of cDNA using real-time PCR. J. Immunol. Methods 278:261-269. https://doi.org/10.1016/S0022-1759(03)00223-0
- Zhang, Y., Fan, Q. and Loria, R. 2016. A re-evaluation of the taxonomy of phytopathogenic genera Dickeya and Pectobacterium using whole-genome sequencing data. Syst. Appl. Microbiol. 39:252-259. https://doi.org/10.1016/j.syapm.2016.04.001