한국발생생물학회지:발생과생식 (Development and Reproduction)

  • 제25권2호
  • /
  • Pages.105-111
  • /
  • 2021
  • /
  • 2465-9525(pISSN)
  • /
  • 2465-9541(eISSN)
한국발생생물학회 (The Korean Society of Developmental Biology)
권호 표지
DOI QR코드

DOI QR Code

Analysis of Geographical Genetic Differences of Arkshell Populations in Korea

  • Yoon, Jong-Man (Department of Aquatic Life Medicine, College of Ocean Science and Technology, Kunsan National University)
  • 투고 : 2021.03.02
  • 심사 : 2021.05.29
  • 발행 : 2021.06.30
PDF 다운로드
⟨ 이전 논문 다음 논문 ⟩

초록

A PCR-founded genetic analysis aim and principle was used to foster a hierarchical polar dendrogram of the Euclidean genetic distances (GDs) for two arkshell populations, Scapharca broughtonii (YEOSU, Yeosu population and JINHAE, Jinhae population). Five oligonucleotides primers were make use of to craft 354 and 390 scorable bands in the Yeosu and Jinhae populations, respectively, outspreading in DNA fragment size from 100 bp to 1,600 bp. The bandsharing (BS) results disclosed that the Jinhae population had a higher average BS value (0.700) than that for the Yeosu population (0.692). The GD between individuals supported an adjacent association in grouping II (JINHAE 12 - JINHAE 22). The observation of a noteworthy GD between the two Scapharca populations verified that this PCR-generated technique could be a profitable attempt for within- and between-population-grounded biological DNA scrutiny. The potential of PCR inquiry will be favorable in the selection of individuals and/or populations for several reproductive- and/or quarantine-connected characters in aquafarming manufacture.

키워드

참고문헌

  1. Bartish IV, Garkava LP, Rumpunen K, Nybom H (2000) Phylogenetic relationships and differentiation among and within populations of Chaenomeles Lindl. (Rosaceae) estimated with RAPDs and isozymes. Theor Appl Genet 101:554-563. https://doi.org/10.1007/s001220051515
  2. Callejas C, Ochando MD (1998) Identification of Spanish barbel species using the RAPD technique. J Fish Biol 53:208-215. https://doi.org/10.1111/j.1095-8649.1998.tb00121.x
  3. Chenyambuga SW, Hanotte O, Hirbo J, Watts PC, Kemp SJ, Kifaro GC, Gwakisa PS, Petersen PH, Rege JEO (2004) Genetic characterization of indigenous goats of sub-Saharan Africa using microsatellite DNA markers. Asian-Australas J Anim Sci 17:445-452. https://doi.org/10.5713/ajas.2004.445
  4. Huang BX, Peakall R, Hanna PJ (2000) Analysis of genetic structure of blacklip abalone (Haliotis rubra) populations using RAPD, minisatellite and microsatellite markers. Mar Biol 136:207-216. https://doi.org/10.1007/s002270050678
  5. Jeon JH, Yoon JM (2015) Genetic distances of three venerid species identified by PCR analysis. Korean J Malacol 31:257-262. https://doi.org/10.9710/kjm.2015.31.4.257
  6. Kang SI, Yoon IS, Choi KS, Kim JS, Lee JS, Heu MS, Kim JS (2020) Sensory and nutritional characteristics of seasoned broughton's ribbed ark Scapharca broughtonii product. Korean J Fish Aquat Sci 53:342-350. https://doi.org/10.5657/KFAS.2020.0342
  7. Kim JB, Lee SY, Jung CG, Jung CS, Son SG (2007) The effects of the spat planting time and environmental factors in the arkshell, Scapharca broughtonii Schrenck culture. J Aquacult 20:31-40.
  8. Kim JY, Park CY, Yoon JM (2004) Genetic differences and DNA polymorphism in oyster (Crassostrea spp.) analysed by RAPD-PCR. Korean J Genet 26:123-134.
  9. Kim S, Kim YH, Yoon JM (2006) Genetic variation in geographic crayfish (Cambaroides similis) populations. J Fish Pathol 19:141-153.
  10. Kim SD, Kim MK, Kang MS, Lee YG, Kim DS (2000) Effects of ark shell powder on the fermentation and quality of Kimchi. Food Sci Biotechnol 9:280-284.
  11. Klinbunga S, Ampayup P, Tassanakajon A, Jarayabhand P, Yoosukh W (2000) Development of species-specific markers of the tropical oyster (Crassostrea belcheri) in Thailand. Mar Biotechnol 2:476-484. https://doi.org/10.1007/s101260000028
  12. Lee HC, Jo AH, Kang JY, Park EJ, Park MJ, Kim JB (2020) Qualitative and quantitative evaluation of residual microplastics in ark shell. Korean J Food Preserv 27:416-421. https://doi.org/10.11002/kjfp.2020.27.3.416
  13. Liu Z, Li P, Argue BJ, Dunham RA (1998) Inheritance of RAPD markers in channel catfish (Ictalurus punctatus), blue catfish (I. Furcatus) and their F1, F2 and backcross hybrids. Anim Genet 29:58-62. https://doi.org/10.1046/j.1365-2052.1998.00284.x
  14. Mamuris Z, Stamatis C, Bani M, Triantaphyllidis C (1999) Taxonomic relationships between four species of the Mullidae family revealed by three genetic methods: Allozymes, random amplified polymorphic DNA and mitochondrial DNA. J Fish Biol 55:572-587. https://doi.org/10.1111/j.1095-8649.1999.tb00700.x
  15. McCormack GP, Powell R, Keegan BF (2000) Comparative analysis of two populations of the brittle star Amphiura filiformis (Echinodermata: Ophiuroidae) with different life history strategies using RAPD markers. Mar Biotechnol 2:100-106. https://doi.org/10.1007/s101269900013
  16. Nozaki T, Mishiba K, Mii M, Koba T (2000) Construction of synteny groups od Brassica alboglabra by RAPD markers and detection of chromosome aberrations and distorted transmission under the genetic background of B. campestris. Theor Appl Genet 101:538-546. https://doi.org/10.1007/s001220051513
  17. Oh H, Yoon JM (2014) Genetic distances of three mollusk species investigated by PCR analysis. Dev Reprod 18:43-49. https://doi.org/10.12717/DR.2014.18.1.043
  18. Park SY, Park JS, Yoon JM (2005) Genetic differences and variations in slipper lobster (Ibacus ciliatus) and deep sea lobster (Puerulus sewelli) determined by RAPD analysis. Korean J Genet 25:307-317.
  19. Rha SJ, Han KH, Choi MR, Kho KH (2010) Cryopreservation of Scapharca broughtonii (Schrenck) sperm. Korean J Malacol 26:255-260.
  20. Siti Azizah MN, Ruzainah A and Patimah I (2005) Development of RAPD markers in the eelloach (Pangio spp.) for genetic discrimination and monitoring of wild and cultured populations. World Aquacult 36:37-43.
  21. Smith PJ, Benson PG, and McVeagh SM (1997) A comparison of three genetic methods used for stock discrimination of orange roughy, Hoplostethus atlanticus: Allozymes, mitochondrial DNA, and random amplified polymorphic DNA. Fish Bull 95:800-811.
  22. Suprabha P, Anilkumar K, Aravindakshan TV, Raghunandanan KV (2005) Assessment of bandsharing values in RAPD-PCR analysis of dwarf cattle of Kerala. Asian-Australas J Anim Sci 18:1217-1220. https://doi.org/10.5713/ajas.2005.1217
  23. Yoon JM (2018) Genetic distances of Paralichthys olivaceus populations investigated by PCR. Dev Reprod 22:283-288. https://doi.org/10.12717/DR.2018.22.3.283
  24. Yoon JM, Kim JY (2004) Genetic differences within and between populations of Korean catfish (S. asotus) and bullhead (P. fulvidraco) analysed by RAPD-PCR. Asian-Australas J Anim Sci 17:1053-1061. https://doi.org/10.5713/ajas.2004.1053
  25. Yoon JM, Kim YH (2003) Wide marsh clam (Corbicula spp.) populations from three sites analysed by RAPD-PCR-AGE. Bull Electrochem 19:337-348.
  26. Yoon JM, Park HY (2002) Genetic similarity and variation in the cultured and wild crucian carp (Carassius carassius) estimated with random amplified polymorphic DNA. Asian-Australas J Anim Sci 15:470-476. https://doi.org/10.5713/ajas.2002.470
  27. Yoke-Kqueen C, Radu S (2006) Random amplified polymorphic DNA analysis of genetically modified organisms. J Biotechnol 127:161-166. https://doi.org/10.1016/j.jbiotec.2006.06.001
  28. Zhou L, Wang Y, Gui JF (2000) Analysis of genetic heterogeneity among five gynogenetic clones of silver crucian carp, Carassius auratus gibelio bloch, based on detection of RAPD molecular markers. Cytogenet Cell Genet 88:133-139. https://doi.org/10.1159/000015506