과제정보
This study was partially supported by grants-in-aid from Research and Development Institute, Pibulsongkram Rajabhat University, Thailand. The authors gratefully acknowledge pediatric physicians, nurses, and assistants of Pediatric Unit, Chiangrai Prachanukroh Hospital for fecal specimen collection.
참고문헌
- Tate JE, Burton AH, Boschi-Pinto C, Parashar UD, World Health Organization-Coordinated Global Rotavirus Surveillance Network. 2016. Global, regional, and national estimates of rotavirus mortality in children <5 years of age, 2000-2013. Clin. Infect. Dis. 62: S96-S105. https://doi.org/10.1093/cid/civ1013
- Matthijnssens J, Ciarlet M, Rahman M, Attoui H, Banyai K, Estes MK, et al. 2008. Recommendations for the classification of group A rotaviruses using all 11 genomic RNA segments. Arch. Virol. 153: 1621-1629. https://doi.org/10.1007/s00705-008-0155-1
- Santos N, Hoshino Y. 2005. Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev. Med. Virol. 15: 29-56. https://doi.org/10.1002/rmv.448
- Cowley D, Donato CM, Roczo-Farkas S, Kirkwood CD. 2016. Emergence of a novel equine-like G3P[8] inter-genogroup reassortant rotavirus strain associated with gastroenteritis in Australian children. J. Gen. Virol. 97: 403-410. https://doi.org/10.1099/jgv.0.000352
- Roczo-Farkas S, Kirkwood CD, Bines JE, the Australian Rotavirus Surveillance Group. 2016. Australian Rotavirus Surveillance Program annual report, 2015. Commun. Dis. Intell. 40: E527-E538.
- Roczo-Farkas S, Kirkwood CD, Bines JE, Enteric Virus Group, Murdoch Children Research Institute, Royal Children's Hospital. 2017. Australian Rotavirus Surveillance Program: annual Report, 2016. Commun. Dis. Intell. 41: E455-E471.
- Luchs A, da Costa AC, Cilli A, Komninakis SCV, Carmona RCC, Boen L, et al. 2019. Spread of the emerging equine-like G3P[8] DS-1-like genetic backbone rotavirus strain in Brazil and identification of potential genetic variants. J. Gen. Virol. 100: 7-25. https://doi.org/10.1099/jgv.0.001171
- Guerra SFS, Soares LS, Lobo PS, Penha Junior ET, Sousa Junior EC, Bezerra DAM, et al. 2016. Detection of a novel equine-like G3 rotavirus associated with acute gastroenteritis in Brazil. J. Gen. Virol. 97: 3131-3138. https://doi.org/10.1099/jgv.0.000626
- Gutierrez MB, Fialho AM, Maranhao AG, Malta FC, Andrade JDSR, Assis RMS, et al. 2020. Rotavirus A in Brazil: molecular epidemiology and surveillance during 2018-2019. Pathogens. 9: 515. https://doi.org/10.3390/pathogens9070515
- Katz EM, Esona MD, Betrapally NS, De La Cruz De Leon LA, Neira YR, Rey GJ, et al. 2019. Whole-gene analysis of inter-genogroup reassortant rotaviruses from the Dominican Republic: emergence of equine-like G3 strains and evidence of their reassortment with locally-circulating strains. Virology 534: 114-431. https://doi.org/10.1016/j.virol.2019.06.007
- Pietsch C, Liebert UG. 2018. Molecular characterization of different equine-like G3 rotavirus strains from Germany. Infect. Genet. Evol. 57: 46-50. https://doi.org/10.1016/j.meegid.2017.11.007
- Doro R, Marton S, Bartokne AH, Lengyel G, Agocs Z, Jakab F, et al. 2016. Equine-like G3 rotavirus in Hungary, 2015 - Is it a novel intergenogroup reassortant pandemic strain? Acta. Microbiol. Immunol. Hung. 63: 243-255. https://doi.org/10.1556/030.63.2016.2.8
- Athiyyah AF, Utsumi T, Wahyuni RM, Dinana Z, Yamani LN, Soetjipto, et al. 2019. Molecular epidemiology and clinical features of rotavirus infection among pediatric patients in East Java, Indonesia During 2015-2018: dynamic changes in rotavirus genotypes from equine-like G3 to typical human G1/G3. Front. Microbiol. 10: 940. https://doi.org/10.3389/fmicb.2019.00940
- Cowley D, Nirwati H, Donato CM, Bogdanovic-Sakran N, Boniface K, Kirkwood CD, et al. 2018. Molecular characterisation of rotavirus strains detected during a clinical trial of the human neonatal rotavirus vaccine (RV3-BB) in Indonesia. Vaccine 36: 5872-5878. https://doi.org/10.1016/j.vaccine.2018.08.027
- Utsumi T, Wahyuni RM, Doan YH, Dinana Z, Soegijanto S, Fujii Y, et al. 2018. Equine-like G3 rotavirus strains as predominant strains among children in Indonesia in 2015-2016. Infect. Genet. Evol. 61: 224-228. https://doi.org/10.1016/j.meegid.2018.03.027
- Yandle Z, Coughlan S, Dean J, Tuite G, Conroy A, De Gascun CF. 2020. Group A rotavirus detection and genotype distribution before and after introduction of a National Immunisation Programme in Ireland: 2015-2019. Pathogens 9: 449. https://doi.org/10.3390/pathogens9060449
- Esposito S, Camilloni B, Bianchini S, Ianiro G, Polinori I, Farinelli E, et al. 2019. First detection of a reassortant G3P[8] rotavirus A strain in Italy: a case report in an 8-year-old child. Virol. J. 16: 64. https://doi.org/10.1186/s12985-019-1173-1
- Kikuchi W, Nakagomi T, Gauchan P, Agbemabiese CA, Noguchi A, Nakagomi O, et al. 2018. Detection in Japan of an equine-like G3P[8] reassortant rotavirus A strain that is highly homologous to European strains across all genome segments. Arch. Virol. 163: 791-794. https://doi.org/10.1007/s00705-017-3668-7
- Komoto S, Tacharoenmuang R, Guntapong R, Ide T, Tsuji T, Yoshikawa T, et al. 2016. Reassortment of human and animal rotavirus gene segments in emerging DS-1-Like G1P[8] rotavirus strains. PLoS One 11: e0148416. https://doi.org/10.1371/journal.pone.0148416
- Komoto S, Ide T, Negoro M, Tanaka T, Asada K, Umemoto M, et al. 2018. Characterization of unusual DS-1-like G3P[8] rotavirus strains in children with diarrhea in Japan. J. Med. Virol. 90: 890-898. https://doi.org/10.1002/jmv.25016
- Malasao R, Saito M, Suzuki A, Imagawa T, Nukiwa-Soma N, Tohma K, et al. 2015. Human G3P[4] rotavirus obtained in Japan, 2013, possibly emerged through a human-equine rotavirus reassortment event. Virus Genes 50: 129-133. https://doi.org/10.1007/s11262-014-1135-z
- Arana A, Montes M, Jere KC, Alkorta M, Gomara MI, Cilla G. 2016. Emergence and spread of G3P[8] rotaviruses possessing an equine-like VP7 and a DS-1-like genetic backbone in the Basque Country (North of Spain), 2015. Infect. Genet. Evol. 44: 137-144. https://doi.org/10.1016/j.meegid.2016.06.048
- Chan-It W, Chanta C. 2018. Emergence of G9P[8] rotaviruses in children with acute gastroenteritis in Thailand, 2015-2016. J. Med. Virol. 90: 477-484. https://doi.org/10.1002/jmv.24985
- Tacharoenmuang R, Komoto S, Guntapong R, Upachai S, Singchai P, Ide T, et al. 2020. High prevalence of equine-like G3P[8] rotavirus in children and adults with acute gastroenteritis in Thailand. J. Med. Virol. 92: 174-186. https://doi.org/10.1002/jmv.25591
- Perkins C, Mijatovic-Rustempasic S, Ward ML, Cortese MM, Bowen MD. 2017. Genomic characterization of the first equinelike G3P[8] rotavirus strain detected in the United States. Genome Announc. 5: e01341-e01341.
- Yan H, Nguyen TA, Phan TG, Okitsu S, Li Y, Ushijima H. 2004. Development of RT-multiplex PCR assay for detection of adenovirus and group A and C rotaviruses in diarrheal fecal specimens from children in China. Kansenshogaku Zasshi. 78: 699-709. https://doi.org/10.11150/kansenshogakuzasshi1970.78.699
- Gentsch JR, Glass RI, Woods P, Gouvea V, Gorziglia M, Flores J, et al. 1992. Identification of group A rotavirus gene 4 types by polymerase chain reaction. J. Clin. Microbiol. 30: 1365-1373. https://doi.org/10.1128/jcm.30.6.1365-1373.1992
- Gomara MI, Cubitt D, Desselberger U, Gray J. 2001. Amino acid substitution within the VP7 protein of G2 rotavirus strains associated with failure to serotype. J. Clin. Microbiol. 39: 3796-3798. https://doi.org/10.1128/JCM.39.10.3796-3798.2001
- Gomara MI, Kang G, Gray J. 2004. Rotavirus genotyping: keeping up with an evolving population of human rotaviruses. J. Clin. Virol. 31: 259-265. https://doi.org/10.1016/j.jcv.2004.04.009
- Esona MD, Gautam R, Tam KI, Williams A, Mijatovic-Rustempasic S, Bowen MD. 2015. Multiplexed one-step RT-PCR VP7 and VP4 genotyping assays for rotaviruses using updated primers. J. Virol. Methods 223: 96-104. https://doi.org/10.1016/j.jviromet.2015.07.012
- Matthijnssens J, Rahman M, Martella V, Xuelei Y, De Vos S, De Leener K, et al. 2006. Full genomic analysis of human rotavirus strain B4106 and lapine rotavirus strain 30/96 provides evidence for interspecies transmission. J. Virol. 80: 3801-3810. https://doi.org/10.1128/JVI.80.8.3801-3810.2006
- Chaimongkol N, Khamrin P, Suantai B, Saikhreang W, Thongprachum A, Malasao R, et al. 2012. A wide variety of diarrhea viruses circulating in pediatric patients in Thailand. Clin. Lab. 58: 117-123.
- Chieochansin T, Vutithanachot V, Phumpholsup T, Posuwan N, Theamboonlers A, Poovorawan Y. 2016. The prevalence and genotype diversity of human rotavirus A circulating in Thailand, 2011-2014. Infect. Genet. Evol. 37: 129-136. https://doi.org/10.1016/j.meegid.2015.11.011
- Jiraphongsa C, Bresee JS, Pongsuwanna Y, Kluabwang P, Poonawagul U, Arporntip P, et al. 2005. Epidemiology and burden of rotavirus diarrhea in Thailand: Results of sentinel surveillance. J. Infect. Dis. 192: S87-S93. https://doi.org/10.1086/431508
- Khamrin P, Peerakome S, Tonusin S, Malasao R, Okitsu S, Mizuguchi M, et al. 2006. Emergence of human G9 rotavirus with an exceptionally high frequency in children admitted to hospital with diarrhea in Chiang Mai, Thailand. J. Med. Virol. 78: 273-280. https://doi.org/10.1002/jmv.20536
- Khamrin P, Peerakome S, Tonusin S, Malasao R, Okitsu S, Mizuguchi M, et al. 2007. Changing pattern of rotavirus G genotype distribution in Chiang Mai, Thailand from 2002 to 2004: decline of G9 and reemergence of G1 and G2. J. Med. Virol. 79: 1775-1782. https://doi.org/10.1002/jmv.20960
- Khamrin P, Maneekarn N, Malasao R, Nguyen TA, Ishida S, Okitsu S, et al. 2010. Genotypic linkages of VP4, VP6, VP7, NSP4, NSP5 genes of rotaviruses circulating among children with acute gastroenteritis in Thailand. Infect. Genet. Evol. 10: 467-472. https://doi.org/10.1016/j.meegid.2010.03.002
- Khananurak K, Vutithanachot V, Simakachorn N, Theamboonlers A, Chongsrisawat V, Poovorawan Y. 2010. Prevalence and phylogenetic analysis of rotavirus genotypes in Thailand between 2007 and 2009. Infect. Genet. Evol. 10: 537-545. https://doi.org/10.1016/j.meegid.2010.02.003
- Maiklang O, Vutithanachot V, Vutithanachot C, Hacharoen P, Chieochansin T, Poovorawan Y. 2012. Prevalence of group A genotype human rotavirus among children with dirarrhea in Thailand, 2009-2011. Southeast Asian J. Trop. Med. Public Health 43: 904-916.
- Sakpaisal P, Silapong S, Yowang A, Boonyasakyothin G, Yuttayong B, Suksawad U, et al. 2019. Prevalence and genotypic distribution of rotavirus in Thailand: a multicenter study. Am. J. Trop. Med. Hyg. 100: 1258-1265. https://doi.org/10.4269/ajtmh.18-0763
- Theamboonlers A, Bhattarakosol P, Chongsrisawat V, Sungkapalee T, Wutthirattanakowit N, Poovorawan Y. 2008. Molecular characterization of group A human rotaviruses in Bangkok and Buriram, Thailand during 2004-2006 reveals the predominance of G1P[8], G9P[8] and a rare G3P[19] strain. Virus Genes 36: 289-298. https://doi.org/10.1007/s11262-008-0201-9
- Yodmeeklin A, Khamrin P, Kumthip K, Malasao R, Ukarapol N, Ushijima H, et al. 2018. Increasing predominance of G8P[8] species A rotaviruses in children admitted to hospital with acute gastroenteritis in Thailand, 2010-2013. Arch. Virol. 163: 2165-2178. https://doi.org/10.1007/s00705-018-3848-0
- Chan-it W, Thongprachum A, Dey SK, Phan TG, Khamrin P, Okitsu S, et al. 2011. Detection and genetic characterization of rotavirus infections in non-hospitalized children with acute gastroenteritis in Japan, 2007-2009. Infect. Genet. Evol. 11: 415-422. https://doi.org/10.1016/j.meegid.2010.11.018
- Maneekarn N, Khamrin P. 2014. Rotavirus associated gastroenteritis in Thailand. Virusdisease 25: 201-207. https://doi.org/10.1007/s13337-014-0201-4
- Jagai JS, Sarkar R, Castronovo D, Kattula D, McEntee J, Ward H, et al. 2012. Seasonality of rotavirus in South Asia: a meta-analysis approach assessing associations with temperature, precipitation, and vegetation index. PLoS One 7: e38168. https://doi.org/10.1371/journal.pone.0038168
- Chao DL, Roose A, Roh M, Kotloff KL, Proctor JL. 2019. The seasonality of diarrheal pathogens: A retrospective study of seven sites over three years. PLoS Negl. Trop. Dis. 13: e0007211. https://doi.org/10.1371/journal.pntd.0007211
- Glass RI, Bresee J, Jiang B, Parashar U, Yee E, Gentsch J. Rotavirus and rotavirus vaccines. Adv. Exp. Med. Biol. 582: 45-54.