Development and Reproduction (한국발생생물학회지:발생과생식)

The Korean Society of Developmental Biology (한국발생생물학회)
권호 표지
DOI QR코드

DOI QR Code

Genetic Distances between Tailfin Anchovy (Coilia nasus) Populations Analyzed by PCR

  • Jo, Soo-Gun (Dept. of Biotechnology, College of Ocean Science and Technology, Kunsan National University) ;
  • Yoon, Jong-Man (Dept. of Aquatic Life Medicine, College of Ocean Science and Technology, Kunsan National University)
  • Received : 2021.01.07
  • Accepted : 2021.02.12
  • Published : 2021.03.31
Download PDF
⟨ Previous Next ⟩

Abstract

The author established a PCR-based genetic platform to examine the hierarchical polar dendrogram of Euclidean genetic distances of one tailfin anchovy population, especially for Coilia nasus, which was further associated with other fish population, by connecting with specifically designed oligonucleotide primer sets. Five oligonucleotide primers were used to generate a total of 260 and 211 scorable fragments in Coilia populations I and II, respectively. The DNA fragments ranged from greater than (approximately) 100 to more than 2,000 bp. The average bandsharing values (BS) of individuals from the anchovy population I (0.693) displayed higher values than individuals from population II (0.675). The genetic distance between individuals established the existence of a close relationship in group II. Comparatively, individuals of one anchovy population were fairly related to other fish populations, as shown in the polar hierarchical dendrogram of Euclidean genetic distances. The noteworthy genetic distance determined between two Coilia nasus populations demonstrates that this PCR technique can be applied as one of the several devices for individuals and/or population biological DNA researches undertaken for safeguarding species and for production of anchovies in the littoral area of Korea.

Keywords

References

  1. Baeck GW, Park JM, Choo HG, Hur SH (2011) Diet composition of Coilia nasus in the coastal waters off Gori, Korea. Korean J Ichthyol 23:163-167.
  2. Bommineni VR, Jauhar PP, Peterson TS, Chibbar RN, Almouslem AB (1997) Analysis of hybrids of durum wheat with Thinopyrum junceiforme using RAPD markers. Theor Appl Genet 95:757-763. https://doi.org/10.1007/s001220050622
  3. Gwakisa PS, Kemp SJ, Teale AJ (1994) Characterization of Zebu cattle breeds in Tanzania using random amplified polymorphic DNA markers. Anim Genet 25:89-94. https://doi.org/10.1111/j.1365-2052.1994.tb00085.x
  4. Islam MS, Ahmed ASI, Azam MS, Alam MS (2005) Genetic analysis of three river populations of Catla catla (HAMILTON) using randomly amplified polymorphic DNA markers. Asian-Australas J Anim Sci 18:453-457. https://doi.org/10.5713/ajas.2005.453
  5. Jeffreys AJ, Morton DB (1987) DNA fingerprints of dogs and cats. Anim Genet 18:1-15. https://doi.org/10.1111/j.1365-2052.1987.tb00739.x
  6. Jiang T, Yang J, Liu HB (2011) A comparative study of the morphology of sagittal otolith in Coilia nasus, Coilia mystus and Coilia nasus taihuensis. Mar Sci 35:31-35.
  7. Jun JC, Kang HW, Lee BW (2009) Maturation and spawning of the Korean anchovy Coilia nasus on the west coast of Korea. Dev Reprod 13:123-132.
  8. Jun JC, Jung EY, Lee JY (2003) Histological study on the reproductive cycle of Coilia nasus. J Aqua 16:179-186.
  9. Kim JY, Park CY, Yoon JM (2004) Genetic differences and DNA polymorphism in oyster (Crassostrea spp.) analysed by RAPD-PCR. Korean J Genet 26:123-134.
  10. Kim S, Kim YH, Yoon JM (2006) Genetic variation in geographic crayfish (Cambaroides similis) populations. J Fish Pathol 19:141-153.
  11. Kwun HJ, Kim YH, Kim JB, Jeong CH, Kim JK (2010) One unusual species, Coilia sp. (Engraulidae, Pisces) from the Yellow Sea. Anim Cells Syst 14:137-145. https://doi.org/10.1080/19768354.2010.491182
  12. Kwun NL (2012) The morphological development of larvae and juveniles of the estuary tailfin anchovy, Coilia nasus from Korea. M.S. Thesis, Pukyong Natinal University, Busan, Korea.
  13. Lee BW, Chung EY, Lee JY (2003) Histological study on the reproductive cycle of Coilia nasus. J Aquacult 16:179-186.
  14. Mamuris Z, Stamatis C, Bani M, Triantaphyllidis C (2005) Taxonomic relationships between four species of the Mullidae family revealed by three genetic methods: Allozymes, random amplified polymorpic DNA and mitochondrial DNA. J Fish Biol 55:572-587. https://doi.org/10.1006/jfbi.1999.1017
  15. Oh H, Yoon JM (2014) Genetic distances of three mollusk species investigated by PCR analysis. Dev Reprod 18:43-49. https://doi.org/10.12717/DR.2014.18.1.043
  16. Park SY, Park JS, Yoon JM (2005) Genetic differences and variations in slipper lobster (Ibacus ciliatus) and deep sea lobster (Puerulus sewelli) determined by RAPD analysis. Korean J Genet 27:307-317.
  17. Sharma AK, Bhushan B, Kumar S, Kumar P, Sharma A, Kumar S (2004) Molecular characterization of Rathi and Tharparkar indigenous cattle (Bos indicus) breeds by RAPD-PCR. Asian-Australas J Anim Sci 17:1204-1209. https://doi.org/10.5713/ajas.2004.1204
  18. Song YJ, Yoon JM (2013) Genetic differences of three Pollicipes mitella populations identified by PCR analysis. Dev Reprod 17:199-205. https://doi.org/10.12717/DR.2013.17.3.199
  19. Ye X, Zhu J, Velleman G and Nestor KE (1998) Genetic diversity of commercial turkey primary breeding lines as estimated by DNA fingerprinting. Poult Sci 77:802-807. https://doi.org/10.1093/ps/77.6.802
  20. Yoon JM (2001) Genetic similarity and difference between common carp and Israeli carp (Cyprinus carpio) based on random amplified polymorphic DNAs analyses. Korean J Biol Sci 5:333-339. https://doi.org/10.1080/12265071.2001.9647624
  21. Yoon JM, Kim JY (2004) Genetic differences within and between populations of Korean catfish (S. asotus) and bullhead (P. fulvidraco) analysed by RAPD-PCR. Asian-Australas J Anim Sci 17:1053-1061. https://doi.org/10.5713/ajas.2004.1053
  22. Yoon JM, Kim JY (2010) Genetic differences and geographic variation in cuttle fish (Sepia esculenta Hoyle). Dev Reprod 14:163-170.
  23. Yoon JM, Park KI, Choi SH (2012) Variation of shell color in three geographic white clam (Meretrix lusoria) populations of the Yellow Sea. Dev Reprod 16:47-51.
  24. Yoon JM (2018) Genetic distances of Paralichthys olivaceus populations investigated by PCR. Dev Reprod 22:283-288. https://doi.org/10.12717/DR.2018.22.3.283
  25. Yoon JM (2020) Genetic distances of rainbow trout and masu salmon as determined by PCR-based analysis. Dev Reprod 24:241-248. https://doi.org/10.12717/DR.2020.24.3.241
  26. Yoke-Kqueen C, Radu S (2006) Random amplified polymorphic DNA analysis of genetically modified organisms. J Biotechnol 127:161-166. https://doi.org/10.1016/j.jbiotec.2006.06.001
  27. Zhou L, Wang Y, Gui JF (2000) Analysis of genetic heterogeneity among five gynogenetic clones of silver crucian carp, Carassius auratus gibelio Bloch, based on detection of RAPD molecular markers. Cytogenet Cell Genet 88:133-139. https://doi.org/10.1159/000015506