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A report of 35 unrecorded bacterial species belonging to the classes Alphaproteobacteria and Betaproteobacteria in Korea

  • Jung, Hye Su (Department of Life Science, Chung-Ang University) ;
  • Yoon, Jung-Hoon (Department of Food Science and Biotechnology, Sungkyunkwan University) ;
  • Joh, Kiseong (Department of Bioscience and Biotechnology, Hankuk University of Foreign Studies) ;
  • Seong, Chi-Nam (Department of Biology, Sunchon National University) ;
  • Kim, Won-Yong (Department of Microbiology, College of Medicine, Chung-Ang University) ;
  • Im, Wan-Taek (Department of Biotechnology, Hankyong National University) ;
  • Kim, Myung-Kyum (Department of Bio and Environmental Technology, College of Natural Science, Seoul Women's University) ;
  • Cha, Chang-Jun (Department of Systems Biotechnology, Chung-Ang University) ;
  • Kim, Seung-Bum (Department of Microbiology, Chungnam National University) ;
  • Jeon, Che-Ok (Department of Life Science, Chung-Ang University)
  • Received : 2020.09.27
  • Accepted : 2021.01.22
  • Published : 2021.02.28

Abstract

During a comprehensive investigation of indigenous prokaryotic species in Korea, 25 and 10 bacterial strains assigned to the classes Alphaproteobacteria and Betaproteobacteria, respectively, were isolated from diverse environmental habitats, including soil, mud, tidal field, sea water, sand, rusted iron, and leaf. Based on their high 16S rRNA gene sequence similarities (>98.7%) and the formation of robust phylogenetic clades with type species, each strain was assigned to an independent and predefined bacterial species. Since there were no published or official reports regarding these 35 isolates in Korea, they - 25 species of 14 families in the 5 orders of Alphaproteobacteria and 10 species of 3 families in the two orders of Betaproteobacteria - have been reported as unrecorded species in Korea. In addition, Gram reaction, colony and cell morphology, basic biochemical characteristic, isolation source, and strain ID of each species are also described in the species description sections.

Keywords

References

  1. Harbison, A.B., L.E. Price, M.D. Flythe and S.L. Brauer. 2017. Micropepsis pineolensis gen. nov., sp. nov., a mildly acidophilic Alphaproteobacterium isolated from a poor fen, and proposal of Micropepsaceae fam. nov. within Micropepsales ord. nov. International Journal of Systematic and Evolutionary Microbiology 67:839-844. https://doi.org/10.1099/ijsem.0.001681
  2. Kumar, S., G. Stecher and K. Tamura. 2016. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Molecular Biology and Evolution 33:1870-1874. https://doi.org/10.1093/molbev/msw054
  3. Lee, H.J., S.E. Jeong, M.S. Cho, S.H. Kim, S.S. Lee, B.H. Lee and C.O. Jeon. 2014. Flavihumibacter solisilvae sp. nov., isolated from forest soil. International Journal of Systematic and Evolutionary Microbiology 64:2897-2901. https://doi.org/10.1099/ijs.0.063669-0
  4. Nakai, R., M. Nishijima, N. Tazato, Y. Handa, F. Karray, S. Sayadi, H. Isoda and T. Naganuma. 2014. Oligoflexus tunisiensis gen. nov., sp. nov., a Gram-negative, aerobic, filamentous bacterium of a novel proteobacterial lineage, and description of Oligoflexaceae fam. nov., Oligoflexales ord. nov. and Oligoflexia classis nov. International Journal of Systematic and Evolutionary Microbiology 64:3353-3359. https://doi.org/10.1099/ijs.0.060798-0
  5. Sun, C., L. Xu, X.Y. Yu, Z. Zhao, Y.H. Wu, A. Oren, C.S. Wang and X.W. Xu. 2018. Minwuia thermotolerans gen. nov., sp. nov., a marine bacterium forming a deep branch in the Alphaproteobacteria, and proposal of Minwuiaceae fam. nov. and Minwuiales ord. nov. International Journal of Systematic and Evolutionary Microbiology 68:3856-3862. https://doi.org/10.1099/ijsem.0.003073
  6. Thompson, J.D., T.J. Gibson, F. Plewniak, F. Jeanmougin and D.G. Higgins. 1997. The Clustal_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 25:4876-4882. https://doi.org/10.1093/nar/25.24.4876
  7. Williams, K.P. and D.P. Kelly. 2013. Proposal for a new class within the phylum Proteobacteria, Acidithiobacillia classis nov., with the type order Acidithiobacillales, and emended description of the class Gammaproteobacteria. International Journal of Systematic and Evolutionary Microbiology 63:2901-2906. https://doi.org/10.1099/ijs.0.049270-0
  8. Yoon, S.H., S.M. Ha, S. Kwon, J. Lim, Y. Kim, H. Seo and J. Chun. 2017. Introducing EzBioCloud: A taxonomically united database of 16S rRNA and whole genome assemblies. International Journal of Systematic and Evolutionary Microbiology 67:1613-1617. https://doi.org/10.1099/ijsem.0.001755