DOI QR코드

DOI QR Code

DEMO: Deep MR Parametric Mapping with Unsupervised Multi-Tasking Framework

  • Cheng, Jing (Paul C. Lauterbur Research Center for Biomedical Imaging, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences) ;
  • Liu, Yuanyuan (Paul C. Lauterbur Research Center for Biomedical Imaging, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences) ;
  • Zhu, Yanjie (Paul C. Lauterbur Research Center for Biomedical Imaging, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences) ;
  • Liang, Dong (Paul C. Lauterbur Research Center for Biomedical Imaging, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences)
  • 투고 : 2021.06.07
  • 심사 : 2021.09.17
  • 발행 : 2021.12.30

초록

Compressed sensing (CS) has been investigated in magnetic resonance (MR) parametric mapping to reduce scan time. However, the relatively long reconstruction time restricts its widespread applications in the clinic. Recently, deep learning-based methods have shown great potential in accelerating reconstruction time and improving imaging quality in fast MR imaging, although their adaptation to parametric mapping is still in an early stage. In this paper, we proposed a novel deep learning-based framework DEMO for fast and robust MR parametric mapping. Different from current deep learning-based methods, DEMO trains the network in an unsupervised way, which is more practical given that it is difficult to acquire large fully sampled training data of parametric-weighted images. Specifically, a CS-based loss function is used in DEMO to avoid the necessity of using fully sampled k-space data as the label, thus making it an unsupervised learning approach. DEMO reconstructs parametric weighted images and generates a parametric map simultaneously by unrolling an interaction approach in conventional fast MR parametric mapping, which enables multi-tasking learning. Experimental results showed promising performance of the proposed DEMO framework in quantitative MR T1ρ mapping.

키워드

과제정보

This work was supported partly by the National Natural Science Foundation of China (61771463, 81830056, U1805261, 81971611, 61871373, 81729003, 81901736), National Key R&D Program of China (2017YFC0108802 and 2017YFC0112903), Natural Science Foundation of Guangdong Province (2018A0303130132), Shenzhen Peacock Plan Team Program (KQTD20180413181834876), Innovation and Technology Commission of the government of Hong Kong SAR (MRP/001/18X), Strategic Priority Research Program of Chinese Academy of Sciences (XDB25000000), China Postdoctoral Science Foundation (2021M693316), and SIAT Innovation Program for Excellent Young Researchers (E1G031).

참고문헌

  1. MacKay A, Whittall K, Adler J, Li D, Paty D, Graeb D. In vivo visualization of myelin water in brain by magnetic resonance. Magn Reson Med 1994;31:673-677 https://doi.org/10.1002/mrm.1910310614
  2. Sibley CT, Noureldin RA, Gai N, et al. T1 Mapping in cardiomyopathy at cardiac MR: comparison with endomyocardial biopsy. Radiology 2012;265:724-732 https://doi.org/10.1148/radiol.12112721
  3. Duvvuri U, Charagundla SR, Kudchodkar SB, et al. Human knee: in vivo T1(rho)-weighted MR imaging at 1.5 T-- preliminary experience. Radiology 2001;220:822-826 https://doi.org/10.1148/radiol.2203001662
  4. Regatte RR, Akella SV, Lonner JH, Kneeland JB, Reddy R. T1rho relaxation mapping in human osteoarthritis (OA) cartilage: comparison of T1rho with T2. J Magn Reson Imaging 2006;23:547-553 https://doi.org/10.1002/jmri.20536
  5. Petzschner FH, Ponce IP, Blaimer M, Jakob PM, Breuer FA. Fast MR parameter mapping using k-t principal component analysis. Magn Reson Med 2011;66:706-716 https://doi.org/10.1002/mrm.22826
  6. Velikina JV, Alexander AL, Samsonov A. Accelerating MR parameter mapping using sparsity-promoting regularization in parametric dimension. Magn Reson Med 2013;70:1263-1273 https://doi.org/10.1002/mrm.24577
  7. Zhou Y, Pandit P, Pedoia V, et al. Accelerating T1rho cartilage imaging using compressed sensing with iterative locally adapted support detection and JSENSE. Magn Reson Med 2016;75:1617-1629 https://doi.org/10.1002/mrm.25773
  8. Pandit P, Rivoire J, King K, Li X. Accelerated T1rho acquisition for knee cartilage quantification using compressed sensing and data-driven parallel imaging: a feasibility study. Magn Reson Med 2016;75:1256-1261 https://doi.org/10.1002/mrm.25702
  9. Pedersen H, Kozerke S, Ringgaard S, Nehrke K, Kim WY. k-t PCA: temporally constrained k-t BLAST reconstruction using principal component analysis. Magn Reson Med 2009;62:706-716 https://doi.org/10.1002/mrm.22052
  10. Zhang T, Pauly JM, Levesque IR. Accelerating parameter mapping with a locally low rank constraint. Magn Reson Med 2015;73:655-661 https://doi.org/10.1002/mrm.25161
  11. Zhao B, Lu W, Hitchens TK, Lam F, Ho C, Liang ZP. Accelerated MR parameter mapping with low-rank and sparsity constraints. Magn Reson Med 2015;74:489-498 https://doi.org/10.1002/mrm.25421
  12. Block KT, Uecker M, Frahm J. Model-based iterative reconstruction for radial fast spin-echo MRI. IEEE Trans Med Imaging 2009;28:1759-1769 https://doi.org/10.1109/TMI.2009.2023119
  13. Sumpf TJ, Uecker M, Boretius S, Frahm J. Model-based nonlinear inverse reconstruction for T2 mapping using highly undersampled spin-echo MRI. J Magn Reson Imaging 2011;34:420-428 https://doi.org/10.1002/jmri.22634
  14. Welsh CL, Dibella EV, Adluru G, Hsu EW. Model-based reconstruction of undersampled diffusion tensor k-space data. Magn Reson Med 2013;70:429-440 https://doi.org/10.1002/mrm.24486
  15. Tran-Gia J, Stab D, Wech T, Hahn D, Kostler H. Model-based acceleration of parameter mapping (MAP) for saturation prepared radially acquired data. Magn Reson Med 2013;70:1524-1534 https://doi.org/10.1002/mrm.24600
  16. Zhu Y, Peng X, Wu Y, et al. Direct diffusion tensor estimation using a model-based method with spatial and parametric constraints. Med Phys 2017;44:570-580 https://doi.org/10.1002/mp.12054
  17. Peng X, Ying L, Liu Y, Yuan J, Liu X, Liang D. Accelerated exponential parameterization of T2 relaxation with model-driven low rank and sparsity priors (MORASA). Magn Reson Med 2016;76:1865-1878 https://doi.org/10.1002/mrm.26083
  18. Chu ML, Chang HC, Oshio K, Chen NK. A single-shot T2 mapping protocol based on echo-split gradient-spin-echo acquisition and parametric multiplexed sensitivity encoding based on projection onto convex sets reconstruction. Magn Reson Med 2018;79:383-393 https://doi.org/10.1002/mrm.26696
  19. Zhu Y, Liu Y, Ying L, et al. SCOPE: signal compensation for low-rank plus sparse matrix decomposition for fast parameter mapping. Phys Med Biol 2018;63:185009 https://doi.org/10.1088/0031-9155/63/18/185009
  20. Zhu B, Liu JZ, Cauley SF, Rosen BR, Rosen MS. Image reconstruction by domain-transform manifold learning. Nature 2018;555:487-492 https://doi.org/10.1038/nature25988
  21. Quan TM, Nguyen-Duc T, Jeong WK. Compressed sensing MRI reconstruction using a generative adversarial network with a cyclic loss. IEEE Trans Med Imaging 2018;37:1488-1497 https://doi.org/10.1109/TMI.2018.2820120
  22. Mardani M, Gong E, Cheng JY, et al. Deep generative adversarial neural networks for compressive sensing MRI. IEEE Trans Med Imaging 2019;38:167-179 https://doi.org/10.1109/TMI.2018.2858752
  23. Han Y, Yoo J, Kim HH, Shin HJ, Sung K, Ye JC. Deep learning with domain adaptation for accelerated projection-reconstruction MR. Magn Reson Med 2018;80:1189-1205 https://doi.org/10.1002/mrm.27106
  24. Lee D, Yoo J, Tak S, Ye JC. Deep residual learning for accelerated MRI using magnitude and phase networks. IEEE Trans Biomed Eng 2018;65:1985-1995 https://doi.org/10.1109/TBME.2018.2821699
  25. Wang S, Ke Z, Cheng H, et al. DIMENSION: dynamic MR imaging with both k-space and spatial prior knowledge obtained via multi-supervised network training. NMR Biomed 2019:e4131
  26. Eo T, Jun Y, Kim T, Jang J, Lee HJ, Hwang D. KIKI-net: cross-domain convolutional neural networks for reconstructing undersampled magnetic resonance images. Magn Reson Med 2018;80:2188-2201 https://doi.org/10.1002/mrm.27201
  27. Yang Y, Sun J, Li H, Xu Z. ADMM-CSNet: a deep learning approach for image compressive sensing. IEEE Trans Pattern Anal Mach Intell 2020;42:521-538 https://doi.org/10.1109/tpami.2018.2883941
  28. Hammernik K, Klatzer T, Kobler E, et al. Learning a variational network for reconstruction of accelerated MRI data. Magn Reson Med 2018;79:3055-3071 https://doi.org/10.1002/mrm.26977
  29. Aggarwal HK, Mani MP, Jacob M. MoDL: model-based deep learning architecture for inverse problems. IEEE Trans Med Imaging 2019;38:394-405 https://doi.org/10.1109/tmi.2018.2865356
  30. Schlemper J, Caballero J, Hajnal JV, Price AN, Rueckert D. A deep cascade of convolutional neural networks for dynamic MR image reconstruction. IEEE Trans Med Imaging 2018;37:491-503 https://doi.org/10.1109/tmi.2017.2760978
  31. Adler J, Oktem O. Learned primal-dual reconstruction. IEEE Trans Med Imaging 2018;37:1322-1332 https://doi.org/10.1109/tmi.2018.2799231
  32. Qin C, Schlemper J, Caballero J, Price AN, Hajnal JV, Rueckert D. Convolutional recurrent neural networks for dynamic MR image reconstruction. IEEE Trans Med Imaging 2019;38:280-290 https://doi.org/10.1109/TMI.2018.2863670
  33. Cai C, Wang C, Zeng Y, et al. Single-shot T2 mapping using overlapping-echo detachment planar imaging and a deep convolutional neural network. Magn Reson Med 2018;80:2202-2214 https://doi.org/10.1002/mrm.27205
  34. Liu F, Feng L, Kijowski R. MANTIS: Model-Augmented Neural neTwork with Incoherent k-space Sampling for efficient MR parameter mapping. Magn Reson Med 2019;82:174-188 https://doi.org/10.1002/mrm.27707
  35. Cohen O, Zhu B, Rosen MS. MR fingerprinting Deep RecOnstruction NEtwork (DRONE). Magn Reson Med 2018;80:885-894 https://doi.org/10.1002/mrm.27198
  36. Yang J, Zhang Y, Yin W. A fast alternating direction method for TVL1-L2 signal reconstruction from partial Fourier data. IEEE J Sel Top Signal Process 2010;4:288-297 https://doi.org/10.1109/JSTSP.2010.2042333
  37. Lingala SG, Hu Y, DiBella E, Jacob M. Accelerated dynamic MRI exploiting sparsity and low-rank structure: k-t SLR. IEEE Trans Med Imaging 2011;30:1042-1054 https://doi.org/10.1109/TMI.2010.2100850
  38. Cheng J, Ke Z, Wang H, et al. Learning reconstruction without ground-truth data: an unsupervised way for fast MR imaging. In Proceedings of the 28th Annual Meeting of ISMRM, 2020:3634
  39. Lustig M, Donoho D, Pauly JM. Sparse MRI: the application of compressed sensing for rapid MR imaging. Magn Reson Med 2007;58:1182-1195 https://doi.org/10.1002/mrm.21391
  40. Lustig M, Donoho DL, Santos JM, Pauly JM. Compressed sensing MRI. IEEE Signal Process Mag 2008;25:72-82 https://doi.org/10.1109/MSP.2007.914728
  41. Liang D, Liu B, Wang J, Ying L. Accelerating SENSE using compressed sensing. Magn Reson Med 2009;62:1574-1584 https://doi.org/10.1002/mrm.22161
  42. Liang D, Cheng J, Ke Z, Ying L. Deep magnetic resonance image reconstruction: inverse problems meet neural networks. IEEE Signal Process Mag 2020;37:141-151 https://doi.org/10.1109/msp.2019.2950557
  43. Cheng J, Wang H, Ying L. Model learning: primal dual networks for fast MR imaging. Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 22nd International Conference, Shenzhen, China, 2019:21-29
  44. Walsh DO, Gmitro AF, Marcellin MW. Adaptive reconstruction of phased array MR imagery. Magn Reson Med 2000;43:682-690 https://doi.org/10.1002/(SICI)1522-2594(200005)43:5<682::AID-MRM10>3.0.CO;2-G
  45. Baboli R, Sharafi A, Chang G, Regatte RR. Isotropic morphometry and multicomponent T1 rho mapping of human knee articular cartilage in vivo at 3T. J Magn Reson Imaging 2018;48:1707-1716 https://doi.org/10.1002/jmri.26173
  46. Sharafi A, Xia D, Chang G, Regatte RR. Biexponential T1rho relaxation mapping of human knee cartilage in vivo at 3 T. NMR Biomed 2017;30
  47. Zhu Y, Liu Y, Ying L, Liu X, Zheng H, Liang D. Bio-SCOPE: fast biexponential T1rho mapping of the brain using signal-compensated low-rank plus sparse matrix decomposition. Magn Reson Med 2020;83:2092-2106 https://doi.org/10.1002/mrm.28067