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Characterization of Soil Microorganism from Humus and Indigenous Microorganism Amendments

  • Jan, Umair (Department of Systems Biotechnology, Konkuk University) ;
  • Feiwen, Rui (Department of Envrionmental Health Science, Konkuk University) ;
  • Masood, Jan (Department of Biological Sciences, Southern University of Science and Technology) ;
  • Chun, Se Chul (Department of Envrionmental Health Science, Konkuk University)
  • Received : 2020.05.24
  • Accepted : 2020.08.25
  • Published : 2020.10.31

Abstract

This study was conducted to understand the dynamics of microbial communities of soil microorganisms, and their distribution and abundance in the indigenous microorganisms (IMOs) manipulated from humus collected from the forest near the crop field. The soil microorganisms originated from humus and artificially cultured microbial-based soil amendments were characterized by molecular and biochemical analyses. The bacterial population (2 × 106~13 × 106 CFU/g sample) was approximately 100-fold abundant than the fungal population (2 × 104~8 × 104 CFU/g sample). The 16S rDNA and ITS sequence analyses showed that the bacterial and fungal communities in humus and IMOs were mainly composed of Bacillus and Pseudomonas, and Trichoderma and Aspergillus species, respectively. Some of the bacterial isolates from the humus and IMOs showed strong inhibitory activity against soil-borne pathogenic fungi Fusarium oxysporum and Sclerotinia sclerotiorum. These bacteria also showed the siderophore production activity as well as phosphate solubilizing activity, which are requisite traits for biological control of plant pathogenic fungi. These results suggest that humus and IMOs could be a useful resource for sustainable agriculture.

Keywords

References

  1. Dubey RK, Tripathi V, Prabha R, et al. Methods for exploring soil microbial diversity. In: Unravelling the Soil Microbiome. SpringerBriefs in Environmental Science. Cham (Switzerland): Springer; 2020. p. 23-32.
  2. Lasota J, Blonska E, Lyszczarz S, et al. Forest humus type governs heavy metal accumulation in specific organic matter fractions. Water, Air & Soil pollution. 2020;231:80. https://doi.org/10.1007/s11270-020-4450-0
  3. Kumar BL, Gopal DS. Effective role of indigenous microorganisms for sustainable environment. 3 Biotech. 2015;5(6):867-876. https://doi.org/10.1007/s13205-015-0293-6
  4. Nyein WW, Kim DH, Chun SC. Soil microbial population in relation to farming system. Korean Society of Mycobiology Spring Conferences 2017.
  5. Trump C. Korean natural farming on large scale science and economics. Paper presented at the 1st International Symposium of Natural Science Farming Seoul; 2016; Seoul, South Korea.
  6. Cai M, Yao J, Yang H, et al. Aerobic biodegradation process of petroleum and pathway of main compounds in water flooding well of Dagang oil field. Bioresour Technol. 2013;144:100-106. https://doi.org/10.1016/j.biortech.2013.06.082
  7. Piccolo A. The supramolecular structure of humic substances: a novel understanding of humus chemistry and implications in soil science. Adv Agron. 2002;75:57-134. https://doi.org/10.1016/S0065-2113(02)75003-7
  8. Insam H. Microorganisms and humus in soils. In: Piccolo A, editor. Humic substances in terrestrial ecosystems. Elsevier Science BV; 1996. p. 265-292. DOI:10.1016/B978-044481516-3/50007-4
  9. Braga RM, Dourado MN, Araujo WL. Microbial interactions: ecology in a molecular perspective. Brazil J Microbiol. 2016;47:86-98. https://doi.org/10.1016/j.bjm.2016.10.005
  10. Choudhary D. Plant growth-promotion (PGP) activities and molecular characterization of rhizobacterial strains isolated from soybean (Glycine max L. Merril) plants against charcoal rot pathogen, Macrophomina phaseolina. Biotechnol Lett. 2011;33(11):2287-2295. https://doi.org/10.1007/s10529-011-0699-0
  11. Beauregard PB, Chai Y, Vlamakis H, et al. Bacillus subtilis biofilm induction by plant polysaccharides. Proc Natl Acad Sci USA. 2013;110(17):E1621-E30. https://doi.org/10.1073/pnas.1218984110
  12. Kang SM, Radhakrishnan R, Lee IJ. Bacillus amyloliquefaciens subsp. plantarum GR53, a potent biocontrol agent resists Rhizoctonia disease on Chinese cabbage through hormonal and antioxidants regulation. World J Microbiol Biotechnol. 2015;31(10):1517-1527. https://doi.org/10.1007/s11274-015-1896-0
  13. Singla J, Krattinger S, Wrigley CW, et al. Biotic stress resistance genes in wheat. In: Wrigley C, Corke H, Faubion J, editors. Encyclopedia of food grains. Waltham (MA): Academic Press; 2016. p. 388-392.
  14. Ghazanfar MU, Raza M, Raza W, et al. Trichoderma as potential biocontrol agent, its exploitation in agriculture: a review. Plant Protect. 2018;25:2.
  15. Conrath U, Beckers GJ, Langenbach CJ, et al. Priming for enhanced defense. Annu Rev Phytopathol. 2015;53:97-119. https://doi.org/10.1146/annurev-phyto-080614-120132
  16. Schwyn B, Neilands J. Universal chemical assay for the detection and determination of siderophores. Anal Biochem. 1987;160(1):47-56. https://doi.org/10.1016/0003-2697(87)90612-9
  17. Ji SH, Gururani MA, Chun SC. Isolation and characterization of plant growth promoting endophytic diazotrophic bacteria from Korean rice cultivars. Microbiol Res. 2014;169(1):83-98. https://doi.org/10.1016/j.micres.2013.06.003
  18. Milagres AM, Machuca A, Napoleao D. Detection of siderophore production from several fungi and bacteria by a modification of Chrome Azurol S (CAS) agar plate assay. J Microbiol Methods. 1999;37(1):1-6. https://doi.org/10.1016/S0167-7012(99)00028-7
  19. Mehta S, Nautiyal CS. An efficient method for qualitative screening of phosphate-solubilizing bacteria. Curr Microbiol. 2001;43(1):51-56. https://doi.org/10.1007/s002840010259
  20. Rodriguez H, Fraga R. Phosphate solubilizing bacteria and their role in plant growth promotion. Biotechnol Adv. 1999;17(4-5):319-339. https://doi.org/10.1016/S0734-9750(99)00014-2
  21. Chiemela FA, Serafin LN, Ricardo LI, et al. Isolation and characterization of indigenous microorganism (IMO) from Ifugao bamboo (Phyllostachys Aurea) forest. Int J Sci Res. 2013;4:1319-1324.
  22. Weisburg WG, Barns SM, Pelletier DA, et al. 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol Res. 1991;173(2):697-703. https://doi.org/10.1128/JB.173.2.697-703.1991
  23. Murphy D, Sparling G, Fillery IR. Stratification of microbial biomass C and N and gross N mineralisation with soil depth in two contrasting Western Australian agricultural soils. Soil Res. 1998;36(1):45-56. https://doi.org/10.1071/S97045
  24. Ha TN. Using Trichoderma species for biological control of plant pathogens in Vietnam. J Int Soc Southeast Asian Agric Sci. 2010;16:17-21.
  25. Montealegre JR, Reyes R, Perez LM, et al. Selection of bioantagonistic bacteria to be used in biological control of Rhizoctonia solani in tomato. Electron J Biotechnol. 2003;6(2):115-127.
  26. Lee KJ, Kamala-Kannan S, Sub HS, et al. Biological control of Phytophthora blight in red pepper (Capsicum annuum L.) using Bacillus subtilis. World J Microbiol Biotechnol. 2008;24(7):1139-1145. https://doi.org/10.1007/s11274-007-9585-2
  27. Elamvazhuthi P, Subramanian M. Antagonistic activity of actinomycetes from Jeypore paddy soils against selective phytopathogenic fungi. J Modern Biotechnol. 2013;2:66-72.
  28. Glick BR. Plant growth promoting bacteria: mechanisms and applications. Scientifica. 2012;2012:963401. https://doi.org/10.6064/2012/963401
  29. Haas D, Defago G. Biological control of soil-borne pathogens by fluorescent pseudomonads. Nat Rev Microbiol. 2005;3(4):307-319. https://doi.org/10.1038/nrmicro1129
  30. Wahyudi AT, Astuti RP, Widyawati A, et al. Characterization of Bacillus sp. strains isolated from rhizosphere of soybean plants for their use as potential plant growth for promoting rhizobacteria. J Microbiol Antimicrobials. 2011;3:34-40.
  31. Joseph B, Ranjan Patra R, Lawrence R. Characterization of plant growth promoting rhizobacteria associated with chickpea (Cicer arietinum L.). Int J Plant Prod. 2012;1:141-152.
  32. Dimkpa C, Svatos A, Merten D, et al. Hydroxamate siderophores produced by Streptomyces acidiscabies E13 bind nickel and promote growth in cowpea (Vigna unguiculata L.) under nickel stress. Can J Microbiol. 2008;54(3):163-172. https://doi.org/10.1139/W07-130
  33. Banerjee S, Palit R, Sengupta C, et al. Stress induced phosphate solubilization by Arthrobacter Sp.and Bacillus sp. isolated from tomato rhizosphere. Aust J Crop Sci. 2010;4:378.
  34. Chaiharn M, Lumyong S. Phosphate solubilization potential and stress tolerance of rhizobacteria from rice soil in Northern Thailand. World J Microbiol Biotechnol. 2009;25(2):305-314. https://doi.org/10.1007/s11274-008-9892-2
  35. Ahmad R, Naveed M, Aslam M, et al. Economizing the use of nitrogen fertilizer in wheat production through enriched compost. Renew Agric Food Syst. 2008;23(03):243-249. https://doi.org/10.1017/S1742170508002299
  36. Son HJ, Park GT, Cha MS, et al. Solubilization of insoluble inorganic phosphates by a novel salt- and pH-tolerant Pantoea agglomerans R-42 isolated from soybean rhizosphere. Bioresour Technol. 2006;97(2):204-210. https://doi.org/10.1016/j.biortech.2005.02.021
  37. Chandra S, Choure K, Dubey RC, et al. Rhizosphere competent Mesorhizobiumloti MP6 induces root hair curling, inhibits Sclerotinia sclerotiorum and enhances growth of Indian mustard (Brassica campestris). Braz J Microbiol. 2007;38(1):124-130. https://doi.org/10.1590/S1517-83822007000100026
  38. Ryu CM, Hu CH, Reddy M, et al. Different signaling pathways of induced resistance by rhizobacteria in Arabidopsis thaliana against two pathovars of Pseudomonas syringae. New Phytol. 2003;160(2):413-420. https://doi.org/10.1046/j.1469-8137.2003.00883.x
  39. Okon Y, Labandera-Gonzalez C. Agronomic applications of Azospirillum: an evaluation of 20 years worldwide field inoculation. Soil Biol Biochem. 1994;26(12):1591-1601. https://doi.org/10.1016/0038-0717(94)90311-5
  40. Glick BR. The enhancement of plant growth by free-living bacteria. Can J Microbiol. 1995;41(2):109-117. https://doi.org/10.1139/m95-015
  41. Gururani MA, Upadhyaya CP, Baskar V, et al. Plant growth-promoting rhizobacteria enhance abiotic stress tolerance in Solanum tuberosum through inducing changes in the expression of ROS-scavenging enzymes and improved photosynthetic performance. J Plant Growth Regul. 2013;32(2):245-258. https://doi.org/10.1007/s00344-012-9292-6

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