Journal of Plant Biotechnology

  • 제47권2호
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  • Pages.131-140
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  • 2020
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  • 1229-2818(pISSN)
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  • 2384-1397(eISSN)
한국식물생명공학회 (The Korean Society of Plant Biotechnology)
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엽록체 전장유전체 정보를 이용한 감자 야생종 Solanum stoloniferum 구별 분자 마커 개발

Comparison of the complete chloroplast genome sequence of Solanum stoloniferum with other Solanum species generates PCR-based markers specific for Solanum stoloniferum

  • 김수정 (대구대학교 과학생명융합대학 원예학과) ;
  • 박태호 (대구대학교 과학생명융합대학 원예학과)
  • 투고 : 2020.06.11
  • 심사 : 2020.06.18
  • 발행 : 2020.06.30
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초록

Solanum stoloniferum은 가지과에 속하는 4배체 감자 야생종 중의 하나로 감자 육종에서 다양한 병원균에 대한 저항성으로 인하여 좋은 재료로 활용되고 있다. 하지만, 감자와의 생식적 장벽으로 인하여 감자와 직접적인 교배를 통해 육종을 할 수 없어 이를 극복하기 위해 체세포 융합 등의 방법이 이용될 수 있다. 세포 융합 이후에는 분자마커를 이용하여 적합한 융합체 선발이 필요한데 이를 위해 본 연구에서는 S. stoloniferum 특이적 마커를 개발하기 위하여 S. stoloniferum의 엽록체 전장 유전체 정보를 분석하고 이를 기반으로 한 마커를 개발하였다. S. stoloniferum의 cpDNA 총 길이는 155,567 bp이고, 6개의 다른 Solanum 종과의 비교를 통해 S. stoloniferum가 S. berthaultii와 가장 가까운 유연관계인 것을 확인하였다. 다섯 종의 Solanum과의 엽록체 전장 유전체 다중 정렬에서는 S. stoloniferum 특이적인 6개의 InDel과 39개의 SNP를 구명하였으며, 이 정보를 이용하여 최종적으로 네개의 S. stoloniferum 특이적인 PCR 기반의 분자마커를 개발하였다. 이 마커들은 적절한 체세포 융합체를 선발하고 S. stoloniferum을 이용한 감자 품종 육성에 기여할 수 있을 것이다.

Solanum stoloniferum, one of the wild tetraploid Solanum species belonging to the Solanaceae family, is an excellent resource for potato breeding owing to its resistance to several important pathogens. However, the sexual hybridization of S. stoloniferum with S. tuberosum (potato) is hampered due to the sexual incompatibility between the two species. To overcome this and introgress the various novel traits of S. stoloniferum in cultivated potatoes, cell fusion can be performed. The identification of the fusion products is crucial and can be achieved with the aid of molecular markers. In this study, the chloroplast genome sequence of S. stoloniferum was obtained by next-generation sequencing technology, and compared with that of six other Solanum species to identify S. stoloniferum-specific molecular markers. The length of the complete chloroplast genome of S. stoloniferum was found to be 155,567 bp. The structural organization of the chloroplast genome of S. stoloniferum was similar to that of the six other Solanum species studied. Phylogenetic analysis of S. stoloniferum with nine other Solanaceae family members revealed that S. stoloniferum was most closely related to S. berthaultii. Additional comparison of the complete chloroplast genome sequence of S. stoloniferum with that of five Solanum species revealed the presence of six InDels and 39 SNPs specific to S. stoloniferum. Based on these InDels and SNPs, four PCR-based markers were developed to differentiate S. stoloniferum from other Solanum species. These markers will facilitate the selection of fusion products and accelerate potato breeding using S. stoloniferum.

키워드

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