Journal of Veterinary Science

  • 제21권6호
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  • Pages.73.1-73.10
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  • 2020
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  • 1229-845X(pISSN)
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  • 1976-555X(eISSN)
대한수의학회 (The Korean Society of Veterinary Science)
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Complete genome and phylogenetic analysis of bovine papillomavirus type 15 in Southern Xinjiang dairy cow

  • Hu, Jianjun (College of Animal Science, Tarim University) ;
  • Zhang, Wanqi (College of Animal Science, Tarim University) ;
  • Chauhan, Surinder Singh (Faculty of Veterinary and Agricultural Sciences, Dookie Campus, The University of Melbourne) ;
  • Shi, Changqing (College of Animal Science, Tarim University) ;
  • Song, Yumeng (Faculty of Veterinary and Agricultural Sciences, Dookie Campus, The University of Melbourne) ;
  • Zhao, Yubing (College of Animal Science, Tarim University) ;
  • Wang, Zhehong (College of Animal Science, Tarim University) ;
  • Cheng, Long (Faculty of Veterinary and Agricultural Sciences, Dookie Campus, The University of Melbourne) ;
  • Zhang, Yingyu (College of Animal Science, Tarim University)
  • 투고 : 2020.05.23
  • 심사 : 2020.08.03
  • 발행 : 2020.11.30
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초록

Background: Bovine papilloma is a neoplastic disease caused by bovine papillomaviruses (BPVs), which were recently divided into 5 genera and at least 24 genotypes. Objectives: The complete genome sequence of BPV type 15 (BPV Aks-02), a novel putative BPV type from skin samples from infected cows in Southern Xinjiang China, was determined by collecting warty lesions, followed by DNA extraction and amplicon sequencing. Methods: DNA was analyzed initially by polymerase chain reaction (PCR) using the degenerate primers FAP59 and FAP64. The complete genome sequences of the BPV Aks-02 were amplified by PCR using the amplification primers and sequencing primers. Sequence analysis and phylogenetic analysis were performed using bio-informatic software. Results: The nucleotide sequence of the L1 open reading frame (ORF) of BPV Aks-02 was 75% identity to the L1 ORF of BPV-9 reference strain from GenBank. The complete genome consisted of 7,189 base pairs (G + C content of 42.50%) that encoded 5 early (E8, E7, E1, E2, and E4) and 2 late (L1 and L2) genes. The E7 protein contained a consensus CX2CX29CX2C zinc-binding domain and a LxCxE motif. Among the different members of this group, the percentages of the complete genome and ORFs (including 5 early and 2 late ORFs) sequence identity of BPV Aks-02 were closer to the genus Xipapillomavirus 1 of the Xipapillomavirus genus. Phylogenetic analysis and sequence similarities based on the L1 ORF of BPV Aks-02 revealed the same cluster. Conclusions: The results suggest that BPV type (BPV Aks-02) clustered with members of the Xipapillomavirus genus as BPV 15 and were closely related to Xipapillomavirus 1.

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