참고문헌
- Anderson, S., Bankier, A. T., Barrell, B. G., de Bruijn, M. H., Coulson, A. R., Drouin, J., Eperon, I. C., Nierlich, D. P., Roe, B. A., Sanger, F., Schreier, P. H., Smith, A. J., Staden, R. and Young, I. G. 1981. Sequence and organization of the human mitochondrial genome. Nature 290, 457-465. https://doi.org/10.1038/290457a0
- Ashida, H., Mimuro, H., Ogawa, M., Kobayashi, T., Sasakawa, C., Sanada, T. and Kim, M. 2011. Cell death and infection: A double-edged sword for host and pathogen survival. J. Cell. Biol. 195, 931-942. https://doi.org/10.1083/jcb.201108081
- Aw, T. Y. and Jones, D. P. 1989. Nutrient supply and mitochondrial function. Annu. Rev. Nutr. 9, 229-251. https://doi.org/10.1146/annurev.nu.09.070189.001305
- Bacman, S. R., Williams, S. L., Pinto, M., Peralta, S. and Moraes, C. T. 2013. Specific elimination of mutant mitochondrial genomes in patient-derived cells by mitoTALENs. Nat. Med. 19, 1111-1113. https://doi.org/10.1038/nm.3261
- Bell, E. L., Emerling, B. M., Ricoult, S. J. and Guarente, L. 2011. SirT3 suppresses hypoxia inducible factor 1alpha and tumor growth by inhibiting mitochondrial ROS production. Oncogene 30, 2986-2996. https://doi.org/10.1038/onc.2011.37
- Bohovych, I. and Khalimonchuk, O. 2016. Sending out an SOS: mitochondria as a signaling hub. Front. Cell. Dev. Biol. 4, 109.
- Boland, M. L., Chourasia, A. H. and Macleod, K. F. 2013. Mitochondrial dysfunction in cancer. Front. Oncol. 3, 1-28. https://doi.org/10.3389/fonc.2013.00001
- Bralley, J. and Lord, R. 2001. Laboratory Evaluations in Molecular Medicine: Nutrients, Toxicants, and Cell Regulators, 175-208, Institute for Advances in Molecular Medicine: Norcross, GA, USA
- Brookes, P. S., Yoon, Y., Robotham, J. L., Anders, M. W. and Sheu, S. S. 2004. Calcium, ATP, and ROS: a mitochondrial love-hate triangle. Am. J. Physiol. Cell. Physiol. 287, C817-833. https://doi.org/10.1152/ajpcell.00139.2004
- Butow, R. A. and Avadhani, N. G. 2004. Mitochondrial signaling: the retrograde response. Mol. Cell. 14, 1-15. https://doi.org/10.1016/S1097-2765(04)00179-0
- Castro-Vega, L. J., Buffet, A., De Cubas, A. A., Cascon, A., Menara, M., Khalifa, E., Amar, L., Azriel, S., Bourdeau, I., Chabre, O., Curras-Freixes, M., Franco-Vidal, V., Guillaud- Bataille, M., Simian, C., Morin, A., Leton, R., Gomez-Grana, A., Pollard, P. J., Rustin, P., Robledo, M., Favier, J. and Gimenez-Roqueplo, A. P. 2014. Germline mutations in FH confer predisposition to malignant pheochromocytomas and paragangliomas. Hum. Mol. Genet. 23, 2440-2446. https://doi.org/10.1093/hmg/ddt639
- Chance, B., Sies, H. and Boveris, A. 1979. Hydroperoxide metabolism in mammalian organs. Physiol. Rev. 59, 527-605. https://doi.org/10.1152/physrev.1979.59.3.527
- Chandel, N. S. 2015. Evolution of Mitochondria as Signaling Organelles. Cell. Metab. 22, 204-206. https://doi.org/10.1016/j.cmet.2015.05.013
- Chandel, N. S., Maltepe, E., Goldwasser, E., Mathieu, C. E., Simon, M. C. and Schumacker, P. T. 1998. Mitochondrial reactive oxygen species trigger hypoxia-induced transcription. Proc. Natl. Acad. Sci. USA. 95, 11715-11720. https://doi.org/10.1073/pnas.95.20.11715
- Chang, C. J., Yin, P. H., Yang, D. M., Wang, C. H., Hung, W. Y., Chi, C. W., Wei, Y. H. and Lee, H. C. 2009. Mitochondrial dysfunction-induced amphiregulin upregulation mediates chemo-resistance and cell migration in HepG2 cells. Cell. Mol. Life. Sci. 66, 1755-1765. https://doi.org/10.1007/s00018-009-8767-5
- Chatterjee, A., Mambo, E. and Sidransky, D. 2006. Mitochondrial DNA mutations in human cancer. Oncogene 25, 4663-4674. https://doi.org/10.1038/sj.onc.1209604
- Chitkara, D. K., Nurko, S., Shoffner, J. M., Buie, T. and Flores, A. 2003. Abnormalities in gastrointestinal motility are associated with diseases of oxidative phosphorylation in children. Am. J. Gastroenterol. 98, 871-877. https://doi.org/10.1111/j.1572-0241.2003.07385.x
- Cohen, B. H. and Gold, D. R. 2001. Mitochondrial cytopathy in adults: what we know so far. Cleve. Clin. J. Med. 68, 625-626, 629-642. https://doi.org/10.3949/ccjm.68.7.625
- Contreras, L., Drago, I., Zampese, E. and Pozzan, T. 2010. Mitochondria: the calcium connection. Biochim. Biophys. Acta. 1797, 607-618. https://doi.org/10.1016/j.bbabio.2010.05.005
- Copeland, W. C. and Longley, M. J. 2003. DNA polymerase gamma in mitochondrial DNA replication and repair. ScientificWorldJournal 3, 34-44. https://doi.org/10.1100/tsw.2003.09
- Cordero, M. D., de Miguel, M., Carmona-Lopez, I., Bonal, P., Campa, F. and Maria Moreno-Fernandez, A. 2010. Oxidative stress and mitochondrial dysfunction in fibromyalgia. Neuro. Endocrinol. Lett. 31, 169-173.
- Croteau, D. L. and Bohr, V. A. 1997. Repair of oxidative damage to nuclear and mitochondrial DNA in mammalian cells. J. Biol. Chem. 272, 25409-25412. https://doi.org/10.1074/jbc.272.41.25409
- Dan Dunn, J., Alvarez, L. A., Zhang, X. and Soldati, T. 2015. Reactive oxygen species and mitochondria: A nexus of cellular homeostasis. Redox. Biol. 6, 472-485. https://doi.org/10.1016/j.redox.2015.09.005
- Degli Esposti, M. 2014. Bioenergetic evolution in proteobacteria and mitochondria. Genome Biol. Evol. 6, 3238-3251. https://doi.org/10.1093/gbe/evu257
- Desjardins, P., Frost, E. and Morais, R. 1985. Ethidium bromide- induced loss of mitochondrial DNA from primary chicken embryo fibroblasts. Mol. Cell. Biol. 5, 1163-1169. https://doi.org/10.1128/MCB.5.5.1163
- Devine, M. J. and Kittler, J. T. 2018. Mitochondria at the neuronal presynapse in health and disease. Nat. Rev. Neurosci. 19, 63-80. https://doi.org/10.1038/nrn.2017.170
- Diebold, L. and Chandel, N. S. 2016. Mitochondrial ROS regulation of proliferating cells. Free. Radic. Biol. Med. 100, 86-93. https://doi.org/10.1016/j.freeradbiomed.2016.04.198
- Du, X. L., Edelstein, D., Rossetti, L., Fantus, I. G., Goldberg, H., Ziyadeh, F., Wu, J. and Brownlee, M. 2000. Hyperglycemia- induced mitochondrial superoxide overproduction activates the hexosamine pathway and induces plasminogen activator inhibitor-1 expression by increasing Sp1 glycosylation. Proc. Natl. Acad. Sci. USA. 97, 12222-12226. https://doi.org/10.1073/pnas.97.22.12222
- Duchen, M. R. 2004. Mitochondria in health and disease: perspectives on a new mitochondrial biology. Mol. Aspects. Med. 25, 365-451. https://doi.org/10.1016/j.mam.2004.03.001
- Fernandez, D. and Perl, A. 2009. Metabolic control of T cell activation and death in SLE. Autoimmun. Rev. 8, 184-189. https://doi.org/10.1016/j.autrev.2008.07.041
- Ferraresi, R., Troiano, L., Pinti, M., Roat, E., Lugli, E., Quaglino, D., Taverna, D., Bellizzi, D., Passarino, G. and Cossarizza, A. 2008. Resistance of mtDNA-depleted cells to apoptosis. Cytometry. A. 73, 528-537.
- Finley, L. W., Carracedo, A., Lee, J., Souza, A., Egia, A., Zhang, J., Teruya-Feldstein, J., Moreira, P. I., Cardoso, S. M., Clish, C. B., Pandolfi, P. P. and Haigis, M. C. 2011. SIRT3 opposes reprogramming of cancer cell metabolism through HIF1alpha destabilization. Cancer Cell 19, 416-428. https://doi.org/10.1016/j.ccr.2011.02.014
- Gabaldon, T. and Huynen, M. A. 2004. Shaping the mitochondrial proteome. Biochim. Biophys. Acta. 1659, 212-220. https://doi.org/10.1016/j.bbabio.2004.07.011
- Galluzzi, L., Kepp, O. and Kroemer, G. 2012. Mitochondria: master regulators of danger signalling. Nat. Rev. Mol. Cell. Biol. 13, 780-788. https://doi.org/10.1038/nrm3479
- Gammage, P. A., Moraes, C. T. and Minczuk, M. 2017. Mitochondrial genome engineering: The revolution may not be CRISPR-Ized. Trends Genet. 34, 101-110. https://doi.org/10.1016/j.tig.2017.11.001
- Gonzalez-Sanchez, E., Marin, J. J. G. and Perez, M. J. 2014. The expression of genes involved in hepatocellular carcinoma chemoresistance is affected by mitochondrial genome depletion. Mol. Pharm. 11, 1856-1868. https://doi.org/10.1021/mp400732p
- Gray, M. W. 1989. Origin and evolution of mitochondrial DNA. Annu. Rev. Cell. Biol. 5, 25-50. https://doi.org/10.1146/annurev.cb.05.110189.000325
- Graziewicz, M. A., Longley, M. J. and Copeland, W. C. 2006. DNA polymerase gamma in mitochondrial DNA replication and repair. Chem. Rev. 106, 383-405. https://doi.org/10.1021/cr040463d
- Green, D. R. and Reed, J. C. 1998. Mitochondria and apoptosis. Science 281, 1309-1312. https://doi.org/10.1126/science.281.5381.1309
- Green, K., Brand, M. D. and Murphy, M. P. 2004. Prevention of mitochondrial oxidative damage as a therapeutic strategy in diabetes. Diabetes 53 Suppl 1, S110-118. https://doi.org/10.2337/diabetes.53.2007.S110
- Guha, M. and Avadhani, N. G. 2013. Mitochondrial retrograde signaling at the crossroads of tumor bioenergetics, genetics and epigenetics. Mitochondrion 13, 577-591. https://doi.org/10.1016/j.mito.2013.08.007
- Hallows, W. C., Yu, W., Smith, B. C., Devries, M. K., Ellinger, J. J., Someya, S., Shortreed, M. R., Prolla, T., Markley, J. L., Smith, L. M., Zhao, S., Guan, K. L. and Denu, J. M. 2011. Sirt3 promotes the urea cycle and fatty acid oxidation during dietary restriction. Mol. Cell. 41, 139-149. https://doi.org/10.1016/j.molcel.2011.01.002
- Hamanaka, R. B. and Chandel, N. S. 2010. Mitochondrial reactive oxygen species regulate cellular signaling and dictate biological outcomes. Trends. Biochem. Sci. 35, 505-513. https://doi.org/10.1016/j.tibs.2010.04.002
- Hanahan, D. and Weinberg, R. A. 2011. Hallmarks of Cancer: The Next Generation. Cell 144, 646-674. https://doi.org/10.1016/j.cell.2011.02.013
- Harper, M. E., Bevilacqua, L., Hagopian, K., Weindruch, R. and Ramsey, J. J. 2004. Ageing, oxidative stress, and mitochondrial uncoupling. Acta. Physiol. Scand. 182, 321-331. https://doi.org/10.1111/j.1365-201X.2004.01370.x
- Hensen, E. F., Siemers, M. D., Jansen, J. C., Corssmit, E. P., Romijn, J. A., Tops, C. M., van der Mey, A. G., Devilee, P., Cornelisse, C. J., Bayley, J. P. and Vriends, A. H. 2011. Mutations in SDHD are the major determinants of the clinical characteristics of Dutch head and neck paraganglioma patients. Clin. Endocrinol. (Oxf). 75, 650-655. https://doi.org/10.1111/j.1365-2265.2011.04097.x
- Hirschey, M. D., Shimazu, T., Goetzman, E., Jing, E., Schwer, B., Lombard, D. B., Grueter, C. A., Harris, C., Biddinger, S., Ilkayeva, O. R., Stevens, R. D., Li, Y., Saha, A. K., Ruderman, N. B., Bain, J. R., Newgard, C. B., Farese, R. V., Jr., Alt, F. W., Kahn, C. R. and Verdin, E. 2010. SIRT3 regulates mitochondrial fatty-acid oxidation by reversible enzyme deacetylation. Nature 464, 121-125. https://doi.org/10.1038/nature08778
- Hsu, C. C., Wu, L. C., Chi, C. W., Lee, H. C., Hsia, C. Y., Yin, P. H. and Yeh, T. S. 2015. Energy metabolism determines the sensitivity of human hepatocellular carcinoma cells to mitochondrial inhibitors and biguanide drugs. Oncol. Rep. 34, 1620-1628. https://doi.org/10.3892/or.2015.4092
- Hung, W. Y., Huang, K. H., Wu, C. W., Chi, C. W., Kao, H. L., Li, A. F., Yin, P. H. and Lee, H. C. 2012. Mitochondrial dysfunction promotes cell migration via reactive oxygen species-enhanced beta5-integrin expression in human gastric cancer SC-M1 cells. Biochim. Biophys. Acta. 1820, 1102-1110. https://doi.org/10.1016/j.bbagen.2012.04.016
- Hung, W. Y., Wu, C. W., Yin, P. H., Chang, C. J., Li, A. F., Chi, C. W., Wei, Y. H. and Lee, H. C. 2010. Somatic mutations in mitochondrial genome and their potential roles in the progression of human gastric cancer. Biochim. Biophys. Acta. 1800, 264-270. https://doi.org/10.1016/j.bbagen.2009.06.006
- Jazayeri, M., Andreyev, A., Will, Y., Ward, M., Anderson, C. M. and Clevenger, W. 2003. Inducible expression of a dominant negative DNA polymerase-gamma depletes mitochondrial DNA and produces a rho0 phenotype. J. Biol. Chem. 278, 9823-9830. https://doi.org/10.1074/jbc.M211730200
- Jiang, W. W., Masayesva, B., Zahurak, M., Carvalho, A. L., Rosenbaum, E., Mambo, E., Zhou, S., Minhas, K., Benoit, N., Westra, W. H., Alberg, A., Sidransky, D., Koch, W. and Califano, J. 2005. Increased mitochondrial DNA content in saliva associated with head and neck cancer. Clin. Cancer Res. 11, 2486-2491. https://doi.org/10.1158/1078-0432.CCR-04-2147
- Jo, A., Ham, S., Lee, G. H., Lee, Y. I., Kim, S., Lee, Y. S., Shin, J. H. and Lee, Y. 2015. Efficient Mitochondrial Genome Editing by CRISPR/Cas9. Biomed. Res. Int. 2015, 305716.
- Kang, M. R., Kim, M. S., Oh, J. E., Kim, Y. R., Song, S. Y., Seo, S. I., Lee, J. Y., Yoo, N. J. and Lee, S. H. 2009. Mutational analysis of IDH1 codon 132 in glioblastomas and other common cancers. Int. J. Cancer 125, 353-355. https://doi.org/10.1002/ijc.24379
- Karbowski, M. and Neutzner, A. 2012. Neurodegeneration as a consequence of failed mitochondrial maintenance. Acta. Neuropathol. 123, 157-171. https://doi.org/10.1007/s00401-011-0921-0
- Kato, K., Radsak, K. D. and Koprowski, H. 1972. Differential effect of ethidium bromide and cytosine arabinoside on mitochondrial and nuclear DNA synthesis in HeLa cells. Z. Naturforsch. B. 27, 989-991.
-
Kawauchi, K., Araki, K., Tobiume, K. and Tanaka, N. 2008. p53 regulates glucose metabolism through an IKK-NF-
${\kappa}B$ pathway and inhibits cell transformation. Nat. Cell. Biol. 10, 611-618. https://doi.org/10.1038/ncb1724 - Kim, H. S., Patel, K., Muldoon-Jacobs, K., Bisht, K. S., Aykin- Burns, N., Pennington, J. D., van der Meer, R., Nguyen, P., Savage, J., Owens, K. M., Vassilopoulos, A., Ozden, O., Park, S. H., Singh, K. K., Abdulkadir, S. A., Spitz, D. R., Deng, C. X. and Gius, D. 2010. SIRT3 is a mitochondria-localized tumor suppressor required for maintenance of mitochondrial integrity and metabolism during stress. Cancer Cell 17, 41-52. https://doi.org/10.1016/j.ccr.2009.11.023
- Kim, M. M., Clinger, J. D., Masayesva, B. G., Ha, P. K., Zahurak, M. L., Westra, W. H. and Califano, J. A. 2004. Mitochondrial DNA quantity increases with histopathologic grade in premalignant and malignant head and neck lesions. Clin. Cancer. Res. 10, 8512-8515. https://doi.org/10.1158/1078-0432.CCR-04-0734
- Kim, S., Kim, D. H., Jung, W. H. and Koo, J. S. 2013. Succinate dehydrogenase expression in breast cancer. Springerplus 2, 299. https://doi.org/10.1186/2193-1801-2-299
- Konradi, C., Eaton, M., MacDonald, M. L., Walsh, J., Benes, F. M. and Heckers, S. 2004. Molecular evidence for mitochondrial dysfunction in bipolar disorder. Arch. Gen. Psychiatry 61, 300-308. https://doi.org/10.1001/archpsyc.61.3.300
- Launonen, V., Vierimaa, O., Kiuru, M., Isola, J., Roth, S., Pukkala, E., Sistonen, P., Herva, R. and Aaltonen, L. A. 2001. Inherited susceptibility to uterine leiomyomas and renal cell cancer. Proc. Natl. Acad. Sci. USA. 98, 3387-3392. https://doi.org/10.1073/pnas.051633798
- Lee, H. C., Chang, C. M. and Chi, C. W. 2010. Somatic mutations of mitochondrial DNA in aging and cancer progression. Aging. Res. Rev. 9, S47-S58. https://doi.org/10.1016/j.arr.2010.08.009
- Lee, H. C., Huang, K. H., Yeh, T. S. and Chi, C. W. 2014. Somatic alterations in mitochondrial DNA and mitochondrial dysfunction in gastric cancer progression. World. J. Gastroenterol. 20, 3950-3959. https://doi.org/10.3748/wjg.v20.i14.3950
- Lee, H. C., Li, S. H., Lin, J. C., Wu, C. C., Yeh, D. C. and Wei, Y. H. 2004. Somatic mutations in the D-loop and decrease in the copy number of mitochondrial DNA in human hepatocellular carcinoma. Mutat. Res. 547, 71-78. https://doi.org/10.1016/j.mrfmmm.2003.12.011
- Lee, H. C., Yin, P. H., Lin, J. C., Wu, C. C., Chen, C. Y., Wu, C. W., Chi, C. W., Tam, T. N. and Wei, Y. H. 2005. Mitochondrial genome instability and mtDNA depletion in human cancers. Ann. N. Y. Acad. Sci. 1042, 109-122. https://doi.org/10.1196/annals.1338.011
- Lee, S. T., Wu, T. T., Yu, P. Y. and Chen, R. M. 2009. Apoptotic insults to human HepG2 cells induced by S-(+)-ketamine occurs through activation of a Bax-mitochondria- caspase protease pathway. Br. J. Anaesth. 102, 80-89. https://doi.org/10.1093/bja/aen322
- Lee, W., Choi, H. I., Kim, M. J. and Park, S. Y. 2008. Depletion of mitochondrial DNA up-regulates the expression of MDR1 gene via an increase in mRNA stability. Exp. Mol. Med. 40, 109-117. https://doi.org/10.3858/emm.2008.40.1.109
- Li, C. H., Tzeng, S. L., Cheng, Y. W. and Kang, J. J. 2005. Chloramphenicol-induced mitochondrial stress increases p21 expression and prevents cell apoptosis through a p21- dependent pathway. J. Biol. Chem. 280, 26193-26199. https://doi.org/10.1074/jbc.M501371200
- Li, J. M. and Shah, A. M. 2004. Endothelial cell superoxide generation: regulation and relevance for cardiovascular pathophysiology. Am. J. Physiol. Regul. Integr. Comp. Physiol. 287, R1014-1030. https://doi.org/10.1152/ajpregu.00124.2004
- Liemburg-Apers, D. C., Willems, P. H., Koopman, W. J. and Grefte, S. 2015. Interactions between mitochondrial reactive oxygen species and cellular glucose metabolism. Arch. Toxicol. 89, 1209-1226. https://doi.org/10.1007/s00204-015-1520-y
- Limongelli, G., Masarone, D., D'Alessandro, R. and Elliott, P. M. 2012. Mitochondrial diseases and the heart: an overview of molecular basis, diagnosis, treatment and clinical course. Future. Cardiol. 8, 71-88. https://doi.org/10.2217/fca.11.79
- Lin, C. S., Chang, S. C., Wang, L. S., Chou, T. Y., Hsu, W. H., Wu, Y. C. and Wei, Y. H. 2010. The role of mitochondrial DNA alterations in esophageal squamous cell carcinomas. J. Thorac. Cardiovasc. Surg. 139, 189-197 e184. https://doi.org/10.1016/j.jtcvs.2009.04.007
- Lin, C. S., Lee, H. T., Lee, S. Y., Shen, Y. A., Wang, L. S., Chen, Y. J. and Wei, Y. H. 2012. High mitochondrial DNA copy number and bioenergetic function are associated with tumor invasion of esophageal squamous cell carcinoma cell lines. Int. J. Mol. Sci. 13, 11228-11246. https://doi.org/10.3390/ijms130911228
- Liu, J., Killilea, D. W. and Ames, B. N. 2002. Age-associated mitochondrial oxidative decay: improvement of carnitine acetyltransferase substrate-binding affinity and activity in brain by feeding old rats acetyl-L- carnitine and/or R-alpha -lipoic acid. Proc. Natl. Acad. Sci. USA. 99, 1876-1881. https://doi.org/10.1073/pnas.261709098
- Liu, X., Kim, C. N., Yang, J., Jemmerson, R. and Wang, X. 1996. Induction of apoptotic program in cell-free extracts: requirement for dATP and cytochrome c. Cell 86, 147-157. https://doi.org/10.1016/S0092-8674(00)80085-9
- Lopez, J. and Tait, S. W. 2015. Mitochondrial apoptosis: killing cancer using the enemy within. Br. J. Cancer 112, 957-962. https://doi.org/10.1038/bjc.2015.85
- Lu, J., Sharma, L. K. and Bai, Y. 2009. Implications of mitochondrial DNA mutations and mitochondrial dysfunction in tumorigenesis. Cell. Res. 19, 802-815. https://doi.org/10.1038/cr.2009.69
- Luft, R., Ikkos, D., Palmieri, G., Ernster, L. and Afzelius, B. 1962. A case of severe hypermetabolism of nonthyroid origin with a defect in the maintenance of mitochondrial respiratory control: a correlated clinical, biochemical, and morphological study. J. Clin. Invest. 41, 1776-1804. https://doi.org/10.1172/JCI104637
- Ma, Z. A., Zhao, Z. and Turk, J. 2012. Mitochondrial dysfunction and beta-cell failure in type 2 diabetes mellitus. Exp. Diabetes. Res. 2012, 703538.
- Maiese, K., Morhan, S. D. and Chong, Z. Z. 2007. Oxidative stress biology and cell injury during type 1 and type 2 diabetes mellitus. Curr. Neurovasc. Res. 4, 63-71. https://doi.org/10.2174/156720207779940653
- Mambo, E., Chatterjee, A., Xing, M., Tallini, G., Haugen, B. R., Yeung, S. C., Sukumar, S. and Sidransky, D. 2005. Tumorspecific changes in mtDNA content in human cancer. Int. J. Cancer 116, 920-924. https://doi.org/10.1002/ijc.21110
- Mansfield, K. D., Guzy, R. D., Pan, Y., Young, R. M., Cash, T. P., Schumacker, P. T. and Simon, M. C. 2005. Mitochondrial dysfunction resulting from loss of cytochrome c impairs cellular oxygen sensing and hypoxic HIF-alpha activation. Cell. Metab. 1, 393-399. https://doi.org/10.1016/j.cmet.2005.05.003
- Mao, P. and Reddy, P. H. 2010. Is multiple sclerosis a mitochondrial disease? Biochim. Biophys. Acta. 1802, 66-79. https://doi.org/10.1016/j.bbadis.2009.07.002
- Marin-Garcia, J. 2013. Methods to Study Mitochondrial Structure and Function, pp. 13-27, Springer US: Boston, MA, USA
- Mayr, J. A., Meierhofer, D., Zimmermann, F., Feichtinger, R., Kogler, C., Ratschek, M., Schmeller, N., Sperl, W. and Kofler, B. 2008. Loss of complex I due to mitochondrial DNA mutations in renal oncocytoma. Clin. Cancer Res. 14, 2270-2275. https://doi.org/10.1158/1078-0432.CCR-07-4131
- Milligan, J. R., Aguilera, J. A. and Ward, J. F. 1993. Variation of single-strand break yield with scavenger concentration for the SV40 minichromosome irradiated in aqueous solution. Radiat. Res. 133, 158-162. https://doi.org/10.2307/3578351
- Miranda, S., Foncea, R., Guerrero, J. and Leighton, F. 1999. Oxidative stress and upregulation of mitochondrial biogenesis genes in mitochondrial DNA-depleted HeLa cells. Biochem. Biophys. Res. Commun. 258, 44-49. https://doi.org/10.1006/bbrc.1999.0580
- Myhill, S., Booth, N. E. and McLaren-Howard, J. 2009. Chronic fatigue syndrome and mitochondrial dysfunction. Int. J. Clin. Exp. Med. 2, 1-16.
- Naito, A., Carcel-Trullols, J., Xie, C. H., Evans, T. T., Mizumachi, T. and Higuchi, M. 2008. Induction of acquired resistance to antiestrogen by reversible mitochondrial DNA depletion in breast cancer cell line. Int. J. Cancer 122, 1506-1511. https://doi.org/10.1002/ijc.23235
- Naito, A., Cook, C. C., Mizumachi, T., Wang, M., Xie, C. H., Evans, T. T., Kelly, T. and Higuchi, M. 2008. Progressive tumor features accompany epithelial-mesenchymal transition induced in mitochondrial DNA-depleted cells. Cancer Sci. 99, 1584-1588. https://doi.org/10.1111/j.1349-7006.2008.00879.x
- Nass, M. M. 1970. Abnormal DNA patterns in animal mitochondria: ethidium bromide-induced breakdown of closed circular DNA and conditions leading to oligomer accumulation. Proc. Natl. Acad. Sci. USA. 67, 1926-1933. https://doi.org/10.1073/pnas.67.4.1926
- Nicolson, G. L. 2007. Metabolic syndrome and mitochondrial function: molecular replacement and antioxidant supplements to prevent membrane peroxidation and restore mitochondrial function. J. Cell. Biochem. 100, 1352-1369. https://doi.org/10.1002/jcb.21247
- Nicolson, G. L. 2014. Mitochondrial dysfunction and chronic disease: treatment with natural supplements. Integr. Med. (Encinitas). 13, 35-43.
-
Owens, K. M., Aykin-Burns, N., Dayal, D., Coleman, M. C., Domann, F. E. and Spitz, D. R. 2012. Genomic instability induced by mutant succinate dehydrogenase subunit D (SDHD) is mediated by
$O_2^{-\bullet}$ and$H_2O_2$ . Free. Radic. Biol. Med. 52, 160-166. https://doi.org/10.1016/j.freeradbiomed.2011.10.435 - Palmieri, L. and Persico, A. M. 2010. Mitochondrial dysfunction in autism spectrum disorders: cause or effect? Biochim. Biophys. Acta. 1797, 1130-1137. https://doi.org/10.1016/j.bbabio.2010.04.018
- Park, S. Y., Chang, I., Kim, J. Y., Kang, S. W., Park, S. H., Singh, K. and Lee, M. S. 2004. Resistance of mitochondrial DNA-depleted cells against cell death: role of mitochondrial superoxide dismutase. J. Biol. Chem. 279, 7512-7520. https://doi.org/10.1074/jbc.M307677200
- Pashkovskaia, N., Gey, U. and Rodel, G. 2018. Mitochondrial ROS direct the differentiation of murine pluripotent P19 cells. Stem. Cell. Res. 30, 180-191. https://doi.org/10.1016/j.scr.2018.06.007
- Petros, J. A., Baumann, A. K., Ruiz-Pesini, E., Amin, M. B., Sun, C. Q., Hall, J., Lim, S., Issa, M. M., Flanders, W. D., Hosseini, S. H., Marshall, F. F. and Wallace, D. C. 2005. mtDNA mutations increase tumorigenicity in prostate cancer. Proc. Natl. Acad. Sci. USA. 102, 719-724. https://doi.org/10.1073/pnas.0408894102
- Prince, J. A., Harro, J., Blennow, K., Gottfries, C. G. and Oreland, L. 2000. Putamen mitochondrial energy metabolism is highly correlated to emotional and intellectual impairment in schizophrenics. Neuropsychopharmacology 22, 284-292. https://doi.org/10.1016/S0893-133X(99)00111-6
- Qiu, X., Brown, K., Hirschey, M. D., Verdin, E. and Chen, D. 2010. Calorie restriction reduces oxidative stress by SIRT3-mediated SOD2 activation. Cell. Metab. 12, 662-667. https://doi.org/10.1016/j.cmet.2010.11.015
- Rabinovich, R. A. and Vilaro, J. 2010. Structural and functional changes of peripheral muscles in chronic obstructive pulmonary disease patients. Curr. Opin. Pulm. Med. 16, 123-133. https://doi.org/10.1097/MCP.0b013e328336438d
- Reddy, P. H. 2008. Mitochondrial medicine for aging and neurodegenerative diseases. Neuromolecular. Med. 10, 291-315. https://doi.org/10.1007/s12017-008-8044-z
- Rohr, H. P., Wacker, M. and Pein, A. V. 1976. Ethidium bromide and hepatic mitochondrial structure in mice. A morphometric analysis. Pathol. Eur. 11, 129-135.
- Semenza, G. L. 2012. Hypoxia-inducible factors: mediators of cancer progression and targets for cancer therapy. Trends. Pharmacol. Sci. 33, 207-214. https://doi.org/10.1016/j.tips.2012.01.005
- Shigenaga, M. K., Hagen, T. M. and Ames, B. N. 1994. Oxidative damage and mitochondrial decay in aging. Proc. Natl. Acad. Sci. USA. 91, 10771-10778. https://doi.org/10.1073/pnas.91.23.10771
- Shin, Y. K., Yoo, B. C., Chang, H. J., Jeon, E., Hong, S. H., Jung, M. S., Lim, S. J. and Park, J. G. 2005. Down-regulation of mitochondrial F1F0-ATP synthase in human colon cancer cells with induced 5-fluorouracil resistance. Cancer Res. 65, 3162-3170. https://doi.org/10.1158/0008-5472.CAN-04-3300
- Sies, H. 1993. Strategies of antioxidant defense. Eur. J. Biochem. 215, 213-219. https://doi.org/10.1111/j.1432-1033.1993.tb18025.x
-
Singh, K. K., Ayyasamy, V., Owens, K. M., Vujcic, M. and Koul, M. S. 2009. Mutations in mitochondrial DNA polymerase-
${\gamma}$ promote breast tumorigenesis. J. Hum. Genet. 54, 516-524. https://doi.org/10.1038/jhg.2009.71 - Singh, K. K., Russell, J., Sigala, B., Zhang, Y., Williams, J. and Keshav, K. F. 1999. Mitochondrial DNA determines the cellular response to cancer therapeutic agents. Oncogene 18, 6641-6646. https://doi.org/10.1038/sj.onc.1203056
- Sjoblom, T., Jones, S., Wood, L. D., Parsons, D. W., Lin, J., Barber, T. D., Mandelker, D., Leary, R. J., Ptak, J., Silliman, N., Szabo, S., Buckhaults, P., Farrell, C., Meeh, P., Markowitz, S. D., Willis, J., Dawson, D., Willson, J. K., Gazdar, A. F., Hartigan, J., Wu, L., Liu, C., Parmigiani, G., Park, B. H., Bachman, K. E., Papadopoulos, N., Vogelstein, B., Kinzler, K. W. and Velculescu, V. E. 2006. The consensus coding sequences of human breast and colorectal cancers. Science 314, 268-274. https://doi.org/10.1126/science.1133427
- Slonimski, P. P., Perrodin, G. and Croft, J. H. 1968. Ethidium bromide induced mutation of yeast mitochondria: complete transformation of cells into respiratory deficient non-chromosomal "petites". Biochem. Biophys. Res. Commun. 30, 232-239. https://doi.org/10.1016/0006-291X(68)90440-3
- Son, G. and Han, J. 2018. Roles of mitochondria in neuronal development. BMB. Rep. 51, 549-556. https://doi.org/10.5483/BMBRep.2018.51.11.226
- Sotgia, F., Martinez-Outschoorn, U. E. and Lisanti, M. P. 2011. Mitochondrial oxidative stress drives tumor progression and metastasis: should we use antioxidants as a key component of cancer treatment and prevention? BMC. Med. 9, 62. https://doi.org/10.1186/1741-7015-9-62
- Spadafora, D., Kozhukhar, N., Chouljenko, V. N., Kousoulas, K. G. and Alexeyev, M. F. 2016. Methods for efficient elimination of mitochondrial DNA from cultured cells. PLoS One 11, e0154684. https://doi.org/10.1371/journal.pone.0154684
- Spees, J. L., Olson, S. D., Whitney, M. J. and Prockop, D. J. 2006. Mitochondrial transfer between cells can rescue aerobic respiration. Proc. Natl. Acad. Sci. USA. 103, 1283-1288. https://doi.org/10.1073/pnas.0510511103
- Starkov, A. A. 2008. The role of mitochondria in reactive oxygen species metabolism and signaling. Ann. N. Y. Acad. Sci. 1147, 37-52. https://doi.org/10.1196/annals.1427.015
- Swerdlow, R. H. 2011. Brain aging, Alzheimer's disease, and mitochondria. Biochim. Biophys. Acta. 1812, 1630-1639. https://doi.org/10.1016/j.bbadis.2011.08.012
- Tanaka, M., Kovalenko, S. A., Gong, J. S., Borgeld, H. J., Katsumata, K., Hayakawa, M., Yoneda, M. and Ozawa, T. 1996. Accumulation of deletions and point mutations in mitochondrial genome in degenerative diseases. Ann. N. Y. Acad. Sci. 786, 102-111. https://doi.org/10.1111/j.1749-6632.1996.tb39055.x
- Tseng, L. M., Yin, P. H., Chi, C. W., Hsu, C. Y., Wu, C. W., Lee, L. M., Wei, Y. H. and Lee, H. C. 2006. Mitochondrial DNA mutations and mitochondrial DNA depletion in breast cancer. Genes Chromosomes Cancer 45, 629-638. https://doi.org/10.1002/gcc.20326
- Tzagoloff, A. 1982. Mitochondria, pp. 1-14, Springer US: New York, USA
- Tzameli, I. 2012. The evolving role of mitochondria in metabolism. Trends. Endocrinol. Metab. 23, 417-419. https://doi.org/10.1016/j.tem.2012.07.008
- van der Wijst, M. G. P., van Tilburg, A. Y., Ruiters, M. H. J. and Rots, M. G. 2017. Experimental mitochondria-targeted DNA methylation identifies GpC methylation, not CpG methylation, as potential regulator of mitochondrial gene expression. Sci. Rep. 7, 177. https://doi.org/10.1038/s41598-017-00263-z
- van Waveren, C., Moraes, C. T., Sun, Y. and Cheung, H. S. 2006. Oxidative phosphorylation dysfunction modulates expression of extracellular matrix - Remodeling genes and invasion. Carcinogenesis 27, 409-418. https://doi.org/10.1093/carcin/bgi242
- Veltri, K. L., Espiritu, M. and Singh, G. 1990. Distinct genomic copy number in mitochondria of different mammalian organs. J. Cell. Physiol. 143, 160-164. https://doi.org/10.1002/jcp.1041430122
- Victor, V. M., Apostolova, N., Herance, R., Hernandez- Mijares, A. and Rocha, M. 2009. Oxidative stress and mitochondrial dysfunction in atherosclerosis: mitochondriatargeted antioxidants as potential therapy. Curr. Med. Chem. 16, 4654-4667. https://doi.org/10.2174/092986709789878265
- Vyas, S., Zaganjor, E. and Haigis, M. C. 2016. Mitochondria and cancer. Cell 166, 555-566. https://doi.org/10.1016/j.cell.2016.07.002
- Wallace, D. C. 2012. Mitochondria and cancer. Nat. Rev. Cancer 12, 685-698. https://doi.org/10.1038/nrc3365
- Wallace, D. C. 1994. Mitochondrial DNA sequence variation in human evolution and disease. Proc. Natl. Acad. Sci. USA. 91, 8739-8746. https://doi.org/10.1073/pnas.91.19.8739
- Wallace, D. C. 2005. A mitochondrial paradigm of metabolic and degenerative diseases, aging, and cancer: a dawn for evolutionary medicine. Annu. Rev. Genet. 39, 359-407. https://doi.org/10.1146/annurev.genet.39.110304.095751
- Wallace, D. C., Fan, W. and Procaccio, V. 2010. Mitochondrial energetics and therapeutics. Annu. Rev. Pathol. 5, 297-348. https://doi.org/10.1146/annurev.pathol.4.110807.092314
- Wang, C. and Youle, R. J. 2009. The role of mitochondria in apoptosis. Annu. Rev. Genet. 43, 95-118. https://doi.org/10.1146/annurev-genet-102108-134850
- Wang, Y., Liu, V. W., Xue, W. C., Cheung, A. N. and Ngan, H. Y. 2006. Association of decreased mitochondrial DNA content with ovarian cancer progression. Br. J. Cancer 95, 1087-1091. https://doi.org/10.1038/sj.bjc.6603377
- Wei, Y. H., Lu, C. Y., Lee, H. C., Pang, C. Y. and Ma, Y. S. 1998. Oxidative damage and mutation to mitochondrial DNA and age-dependent decline of mitochondrial respiratory function. Ann. N. Y. Acad. Sci. 854, 155-170. https://doi.org/10.1111/j.1749-6632.1998.tb09899.x
- Weinberg, S. E., Sena, L. A. and Chandel, N. S. 2015. Mitochondria in the regulation of innate and adaptive immunity. Immunity 42, 406-417. https://doi.org/10.1016/j.immuni.2015.02.002
- Wiseman, A. and Attardi, G. 1978. Reversible tenfod reduction in mitochondria DNA content of human cells treated with ethidium bromide. Mol. Gen. Genet. 167, 51-63. https://doi.org/10.1007/BF00270321
- Wu, C. W., Yin, P. H., Hung, W. Y., Li, A. F., Li, S. H., Chi, C. W., Wei, Y. H. and Lee, H. C. 2005. Mitochondrial DNA mutations and mitochondrial DNA depletion in gastric cancer. Genes Chromosomes Cancer 44, 19-28. https://doi.org/10.1002/gcc.20213
- Xiao, K., Jiang, J., Wang, W., Cao, S., Zhu, L., Zeng, H., Ouyang, R., Zhou, R. and Chen, P. 2013. Sirt3 is a tumor suppressor in lung adenocarcinoma cells. Oncol. Rep. 30, 1323-1328. https://doi.org/10.3892/or.2013.2604
- Yin, P. H., Lee, H. C., Chau, G. Y., Wu, Y. T., Li, S. H., Lui, W. Y., Wei, Y. H., Liu, T. Y. and Chi, C. W. 2004. Alteration of the copy number and deletion of mitochondrial DNA in human hepatocellular carcinoma. Br. J. Cancer. 90, 2390-2396. https://doi.org/10.1038/sj.bjc.6601838
- Yu, M., Shi, Y., Wei, X., Yang, Y., Zhou, Y., Hao, X., Zhang, N. and Niu, R. 2007. Depletion of mitochondrial DNA by ethidium bromide treatment inhibits the proliferation and tumorigenesis of T47D human breast cancer cells. Toxicol. Lett. 170, 83-93. https://doi.org/10.1016/j.toxlet.2007.02.013
- Yu, M., Zhou, Y., Shi, Y., Ning, L., Yang, Y., Wei, X., Zhang, N., Hao, X. and Niu, R. 2007. Reduced mitochondrial DNA copy number is correlated with tumor progression and prognosis in Chinese breast cancer patients. IUBMB Life 59, 450-457. https://doi.org/10.1080/15216540701509955
- Zylber, E., Vesco, C. and Penman, S. 1969. Selective inhibition of the synthesis of mitochondria-associated RNA by ethidium bromide. J. Mol. Biol. 44, 195-204. https://doi.org/10.1016/0022-2836(69)90414-8