DOI QR코드

DOI QR Code

Comparative Analysis of Chloroplast Genome of Dysphania ambrosioides (L.) Mosyakin & Clemants Understanding Phylogenetic Relationship in Genus Dysphania R. Br.

  • 투고 : 2019.09.30
  • 심사 : 2019.11.14
  • 발행 : 2019.12.31

초록

Dysphania ambrosioides (L.) Mosyakin & Clemants which belongs to Chenopodiaceae/Amaranthaceae sensu in APG system has been known as a useful plant in various fields as well as an invasive species spreading all over the world. To understand its phylogenetic relationship with neighbour species, we completed chloroplast genome of D. ambrosioides collected in Korea. Its length is 151,689 bp consisting of four sub-regions: 83,421 bp of large single copy (LSC) and 18,062 bp of small single copy (SSC) regions are separated by 25,103 bp of inverted repeat (IR) regions. 128 genes (84 protein-coding genes, eight rRNAs, and 36 tRNAs) were annotated. The overall GC content of the chloroplast genome is 36.9% and those in the LSC, SSC and IR regions are 34.9%, 30.3%, and 42.7%, respectively. Distribution of simple sequence repeats are similar to those of the other two Dysphania chloroplasts; however, different features can be utilized for population genetics. Nucleotide diversity of Dysphania chloroplast genomes 18 genes including two ribosomal RNAs contains high nucleotide diversity peaks, which may be genus or species-specific manner. Phylogenetic tree presents that D. ambrosioides occupied a basal position in genus Dysphania and phylogenetic relation of tribe level is presented clearly with complete chloroplast genomes.

키워드

참고문헌

  1. Albuquerque, U.P., U. Patil and A. Mathe. 2018. Medicinal and Aromatic Plants of South America, Springer, Dordrecht, Netherlands.
  2. Aravindhan, V. and A. Rajendran. 2014. Diversity of invasive plant species in boluvampatti forest range, the southern Western Ghats, India. Am Eurasian J Agric Environ Sci 14(8):724-731.
  3. Asaf, S., A.L. Khan, A.R. Khan, M. Waqas, S.M. Kang, M.A. Khan, S.M. Lee and I.J. Lee. 2016. Complete chloroplast genome of Nicotiana otophora and its comparison with related species. Front. Plant Sci. 7:843.
  4. Balogh, L., Z. Botta-Dukat and I. Dancza. 2003. What kind of plants are invasive in Hungary: In Child, L. and J.H. Brock (eds.), Plant Invasions: Ecological threats and management solutions. Backhuys Publishers, Leiden, Netherlands. pp. 131-146.
  5. Bammou, L., M. Belkhaouda, R. Salghi, O. Benali, A. Zarrouk, H. Zarrok and B. Hammouti. 2014. Corrosion inhibition of steel in sulfuric acidic solution by the Chenopodium Ambrosioides Extracts. Journal of the Association of Arab Universities for Basic and Applied Sciences 16(1):83-90.
  6. Bezerra, J.W.A., A.R. Costa, M.A. de Freitas, F.C. Rodrigues, M.A. de Souza, A.R.P. da Silva, A.T.L. dos Santos, K.V. Linhares, H.D.M. Coutinho and J.R. de Lima Silva. 2019. Chemical composition, antimicrobial, modulator and antioxidant activity of essential oil of Dysphania ambrosioides (L.) Mosyakin & Clemants. Comp. Immunol. Microbiol. Infect. Dis. 65:58-64. https://doi.org/10.1016/j.cimid.2019.04.010
  7. Bolger, A.M., M. Lohse and B. Usadel. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30(15):2114-2120. https://doi.org/10.1093/bioinformatics/btu170
  8. Brahim, M.A.S., M. Fadli, L. Hassani, B. Boulay, M. Markouk, K. Bekkouche, A. Abbad, M.A. Ali and M. Larhsini. 2015. Chenopodium ambrosioides var. ambrosioides used in Moroccan traditional medicine can enhance the antimicrobial activity of conventional antibiotics. Ind. Crop. Prod. 71:37-43. https://doi.org/10.1016/j.indcrop.2015.03.067
  9. Brown, C.J., I.A.W. Macdonald and S. Brown. 1985. Invasive alien organisms in South West Africa/Namibia, Foundation for Research Development: CSIR.
  10. Chekem, M.S.G., P.K. Lunga, J.D.D. Tamokou, J.R. Kuiate, P. Tane, G. Vilarem and M. Cerny. 2010. Antifungal properties of Chenopodium ambrosioides essential oil against Candida species. Pharmaceuticals 3(9):2900-2909. https://doi.org/10.3390/ph3092900
  11. Chen, J., Z. Hao, H. Xu, L. Yang, G. Liu, Y. Sheng, C. Zheng, W. Zheng, T. Cheng and J. Shi. 2015. The complete chloroplast genome sequence of the relict woody plant Metasequoia glyptostroboides Hu et Cheng. Front. Plant Sci. 6:447. https://doi.org/10.3389/fpls.2015.00447
  12. Chen, Y. and Z. Yang. 2018. Characterization of the complete plastome of Dysphania botrys, a candidate plant for cancer treatment. Mitochondrial DNA B 3(2):1214-1215. https://doi.org/10.1080/23802359.2018.1530964
  13. Cheng, J., Z. Zhao, B. Li, C. Qin, Z. Wu, D.L. Trejo-Saavedra, X. Luo, J. Cui, R.F. Rivera-Bustamante and S. Li. 2016. A comprehensive characterization of simple sequence repeats in pepper genomes provides valuable resources for marker development in Capsicum. Sci. Rep. 6:18919. https://doi.org/10.1038/srep18919
  14. Chung, H.J., J.D. Jung, H.W. Park, J.H. Kim, H.W. Cha, S.R. Min, W.J. Jeong and J.R. Liu. 2006. The complete chloroplast genome sequences of Solanum tuberosum and comparative analysis with Solanaceae species identified the presence of a 241-bp deletion in cultivated potato chloroplast DNA sequence. Plant Cell Rep. 25(12):1369-1379. https://doi.org/10.1007/s00299-006-0196-4
  15. Dillon, S.J. and A.S. Markey. 2016. Dysphania congestiflora (Chenopodiaceae), a new species from Western Australia. Nuytsia 27:133-138.
  16. Dogra, K., R. Kohli and S. Sood. 2009. An assessment and impact of three invasive species in the Shivalik hills of Himachal Pradesh, India. Int J Biodivers Conserv 1(1):004-010.
  17. Dong, W., C. Xu, D. Li, X. Jin, R. Li, Q. Lu and Z. Suo. 2016. Comparative analysis of the complete chloroplast genome sequences in psammophytic Haloxylon species (Amaranthaceae). PeerJ 4:e2699. https://doi.org/10.7717/peerj.2699
  18. Foxcroft, L.C., D.M. Richardson and J.R. Wilson. 2008. Ornamental plants as invasive aliens: problems and solutions in Kruger National Park, South Africa. Environ Manage 41(1):32-51. https://doi.org/10.1007/s00267-007-9027-9
  19. Fuentes-Bazan, S., G. Mansion and T. Borsch. 2012a. Towards a species level tree of the globally diverse genus Chenopodium (Chenopodiaceae). Mol. Phylogenet. Evol. 62(1):359-374. https://doi.org/10.1016/j.ympev.2011.10.006
  20. Fuentes-Bazan, S., G. Mansion and T. Borsch. 2012b. A novel phylogeny-based generic classification for Chenopodium sensu lato, and a tribal rearrangement of Chenopodioideae (Chenopodiaceae). Willdenowia 42(1):5-25. https://doi.org/10.3372/wi.42.42101
  21. Goia, I., C.M. Ciocanea and A.A. Gavrilidis. 2014. Geographic origins of invasive alien species in "Iron Gates" Natural Park (Banat, Romania). Transylv. Rev. Syst. Ecol. Res. 16(3):115-130.
  22. Han, B.W., H.R. Na and J.O. Hyun. 2018. Floristic study of Jindo island. Korean J. Plant Res. 31(2):162-194 (in Korean). https://doi.org/10.7732/KJPR.2018.31.2.162
  23. Hegazy, A., S. Mussa and H. Farrag. 2008. Invasive plant communities in the Nile Delta coast. Global J. Environ. Res. 2(1):53-61.
  24. Hong, S.Y., K.S. Cheon, K.O. Yoo, H.O. Lee, K.S. Cho, J.T. Suh, S.J. Kim, J.H. Nam, H.B. Sohn and Y.H. Kim. 2017. Complete chloroplast genome sequences and comparative analysis of Chenopodium quinoa and C. album. Front. Plant Sci. 8:1696. https://doi.org/10.3389/fpls.2017.01696
  25. Ibironke, G. and K. Ajiboye. 2007. Studies on the antiinflammatory and analgesic properties of Chenopodium ambrosioides leaf extract in rats. Int. J. Pharmacol. 3(1):111-115. https://doi.org/10.3923/ijp.2007.111.115
  26. Jardim, C.M., G.N. Jham, O.D. Dhingra and M.M. Freire. 2008. Composition and antifungal activity of the essential oil of the Brazilian Chenopodium ambrosioides L. J. Chem. Ecol. 34(9):1213-1218. https://doi.org/10.1007/s10886-008-9526-z
  27. Jeon, J.H. and S.C. Kim. 2019. Comparative Analysis of the Complete Chloroplast Genome Sequences of Three Closely Related East-Asian Wild Roses (Rosa sect. Synstylae; Rosaceae). Genes 10(1):23. https://doi.org/10.3390/genes10010023
  28. Kadereit, G., T. Borsch, K. Weising and H. Freitag. 2003. Phylogeny of Amaranthaceae and Chenopodiaceae and the evolution of C4 photosynthesis. Int. J. Plant Sci. 164(6):959-986. https://doi.org/10.1086/378649
  29. Kadereit, G., E.V. Mavrodiev, E.H. Zacharias and A.P. Sukhorukov. 2010. Molecular phylogeny of Atripliceae (Chenopodioideae, Chenopodiaceae): implications for systematics, biogeography, flower and fruit evolution, and the origin of C4 photosynthesis. Am. J. Bot. 97(10):1664-1687. https://doi.org/10.3732/ajb.1000169
  30. Katoh, K. and D.M. Standley. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol. Biol. Evol. 30(4):772-780. https://doi.org/10.1093/molbev/mst010
  31. Kim, S.H., J. Yang, J. Park, T. Yamada, M. Maki and S.C. Kim. 2019. Comparison of Whole Plastome Sequences between Thermogenic Skunk Cabbage Symplocarpus renifolius and Nonthermogenic S. nipponicus (Orontioideae; Araceae) in East Asia. Int. J. Mol. Sci. 20(19):4678. https://doi.org/10.3390/ijms20194678
  32. Kim, Y., Y. Chung and J. Park. 2019. The complete chloroplast genome sequence of Dysphania pumilio (R. Br.) Mosyakin & Clemants (Amaranthaceae). Mitochondrial DNA B 4(1):403-404. https://doi.org/10.1080/23802359.2018.1547156
  33. Kiuchi, F., Y. Itano, N. Uchiyama, G. Honda, A. Tsubouchi, J. Nakajima-Shimada and T. Aoki. 2002. Monoterpene hydroperoxides with trypanocidal activity from Chenopodium ambrosioides. J. Nat. Prod. 65(4):509-512. https://doi.org/10.1021/np010445g
  34. Kumar, R., A.K. Mishra, N. Dubey and Y. Tripathi. 2007. Evaluation of Chenopodium ambrosioides oil as a potential source of antifungal, antiaflatoxigenic and antioxidant activity. Int. J. Food Microbiol. 115(2):159-164. https://doi.org/10.1016/j.ijfoodmicro.2006.10.017
  35. Lee, Y.M., S.H. Park, S.Y. Jung, S.H. Oh and J.C. Yang. 2011. Study on the current status of naturalized plants in South Korea. Korean J. Pl. Taxon 41(1):87-101. https://doi.org/10.11110/kjpt.2011.41.1.087
  36. Li, H. 2013. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM. arXiv preprint arXiv: 1303.3997.
  37. Li, H., B. Handsaker, A. Wysoker, T. Fennell, J. Ruan, N. Homer, G. Marth, G. Abecasis and R. Durbin. 2009. The sequence alignment/map format and SAMtools. Bioinformatics 25(16):2078-2079. https://doi.org/10.1093/bioinformatics/btp352
  38. Li, W., Y. Liu, Y. Yang, X. Xie, Y. Lu, Z. Yang, X. Jin, W. Dong and Z. Suo. 2018. Interspecific chloroplast genome sequence diversity and genomic resources in Diospyros. BMC plant Biol. 18(1):210. https://doi.org/10.1186/s12870-018-1421-3
  39. Li, W., C. Zhang, X. Guo, Q. Liu and K. Wang. 2019. Complete chloroplast genome of Camellia japonica genome structures, comparative and phylogenetic analysis. PLOS ONE 14(5):e0216645. https://doi.org/10.1371/journal.pone.0216645
  40. Li, Z.Z., J. Saina, A. Gichira, C. Kyalo, Q.F. Wang and J.M. Chen. 2018. Comparative genomics of the balsaminaceae sister genera Hydrocera triflora and Impatiens pinfanensis. Int. J. Mol. Sci. 19(1):319. https://doi.org/10.3390/ijms19010319
  41. Liu, J., M. Dong, S.L. Miao, Z.Y. Li, M.H. Song and R.Q. Wang. 2006. Invasive alien plants in China: role of clonality and geographical origin. Biol. Invasions 8(7):1461-1470. https://doi.org/10.1007/s10530-005-5838-x
  42. Lohse, M., O. Drechsel and R. Bock. 2007. Organellar GenomeDRAW (OGDRAW): a tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes. Curr. Genet. 52(5-6):267-274. https://doi.org/10.1007/s00294-007-0161-y
  43. Lowe, T.M. and S.R. Eddy. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25(5):955-964. https://doi.org/10.1093/nar/25.5.955
  44. Mardis, E.R. 2008. The impact of next-generation sequencing technology on genetics. Trends Genet. 24(3):133-141. https://doi.org/10.1016/j.tig.2007.12.007
  45. Maslo, S. 2016. Preliminary list of invasive alien plant species (IAS) in Bosnia and Herzegovina. Herbologia 16(1): 1-14.
  46. Metzker, M.L. 2010. Sequencing technologies-the next generation. Nat. Rev. Genet. 11(1):31. https://doi.org/10.1038/nrg2626
  47. Mito, T. and T. Uesugi. 2004. Invasive alien species in Japan: the status quo and the new regulation for prevention of their adverse effects. Global Environmental Research 8(2):171-193.
  48. Monzote, L., A.M. Montalvo, S. Almanonni, R. Scull, M. Miranda and J. Abreu. 2006. Activity of the essential oil from Chenopodium ambrosioides grown in Cuba against Leishmania amazonensis. Chemotherapy 52(3):130-136. https://doi.org/10.1159/000092858
  49. Monzote, L., M. Garcia, J. Pastor, L. Gil, R. Scull, L. Maes, P. Cos and L. Gille. 2014. Essential oil from Chenopodium ambrosioides and main components: activity against Leishmania, their mitochondria and other microorganisms. Exp. Parasitol. 136:20-26. https://doi.org/10.1016/j.exppara.2013.10.007
  50. Mosyakin, S.L. and S.E. Clemants. 2002. New nomenclatural combinations in Dysphania R. Br.(Chenopodiaceae): taxa occurring in North America. Ukr. Bot. Zhur. 59(4):380-385.
  51. Mosyakin, S.L. and S.E. Clemants. 2008. Further transfers of glandularpubescent species from Chenopodium subg. Ambrosia to Dysphania (Chenopodiaceae). J Bot Res Inst Tex 2(1):425-431.
  52. Nei, M. and W.H. Li. 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. PNASU. 76(10):5269-5273. https://doi.org/10.1073/pnas.76.10.5269
  53. Nguyen, L.T., H.A. Schmidt, A. von Haeseler and B.Q. Minh. 2014. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 32(1):268-274. https://doi.org/10.1093/molbev/msu300
  54. Pace, L. and F. Tammaro. 2001. The main invasive alien plants in the protected areas in central Italy (Abruzzo): In Visconti, G., M. Beniston, E.D. Iannorelli, D. Barba (eds.), Global Change and Protected Areas, Springer, Dordrecht, Netherlands. pp. 495-504.
  55. Pandey, A.K., U.T. Palni and N. Tripathi. 2014. Repellent activity of some essential oils against two stored product beetles Callosobruchus chinensis L. and C. maculatus F. (Coleoptera: Bruchidae) with reference to Chenopodium ambrosioides L. oil for the safety of pigeon pea seeds. J. Food Sci. Technol. 51(12):4066-4071. https://doi.org/10.1007/s13197-012-0896-4
  56. Park, J. and Y. Kim. 2019. The second complete chloroplast genome of Dysphania pumilio (R. Br.) mosyakin & clemants (Amranthaceae): intraspecies variation of invasive weeds. Mitochondrial DNA Part B 4(1):1428-1429. https://doi.org/10.1080/23802359.2019.1598807
  57. Pavela, R., F. Maggi, G. Lupidi, H. Mbuntcha, V. Woguem, H.M. Womeni, L. Barboni, L.A. Tapondjou and G. Benelli. 2018. Clausena anisata and Dysphania ambrosioides essential oils: from ethno-medicine to modern uses as effective insecticides. Environ. Sci. Pollut. R. 25(11):10493-10503. https://doi.org/10.1007/s11356-017-0267-9
  58. Perth, U. 2011. Dysphania sect. Botryoides (Amaranthaceae s. lat.) in Asia. Willdenowia 43(1):65-80. https://doi.org/10.3372/wi.43.43107
  59. Prasad, C.S., R. Shukla, A. Kumar and N. Dubey. 2010. In vitro and in vivo antifungal activity of essential oils of Cymbopogon martini and Chenopodium ambrosioides and their synergism against dermatophytes. Mycoses 53(2):123-129. https://doi.org/10.1111/j.1439-0507.2008.01676.x
  60. Rastogi, J., D. Rawat and S. Chandra. 2015. Diversity of invasive alien species in Pantnagar flora. Tropical Plant Research 2(3):282-287.
  61. Reyes-Becerril, M., C. Angulo, V. Sanchez, J. Vazquez-Martinez and M.G. Lopez. 2019. Antioxidant, intestinal immune status and anti-inflammatory potential of Chenopodium ambrosioides L. in fish: In vitro and in vivo studies. Fish Shellfish Immunol. 86:420-428. https://doi.org/10.1016/j.fsi.2018.11.059
  62. Rossi-Bergamann, B., S.S. Costa and V.L.G.D. Moraes. 1997. Brazilian medicinal plants: a rich source of immunomodulatory substances. Cienc. Cult. 49(5/6):395-401.
  63. Sekar, K.C. 2012. Invasive alien plants of Indian Himalayan region-diversity and implication. Am J Plant Sci 3(02):177. https://doi.org/10.4236/ajps.2012.32021
  64. Shukla, N., H. Kuntal, A. Shanker and S.N. Sharma. 2018. Mining and analysis of simple sequence repeats in the chloroplast genomes of genus Vigna. Biotechnology Research and Innovation 2(1):9-18. https://doi.org/10.1016/j.biori.2018.08.001
  65. Song, Z., X. Xu, B. Wang, J. Chen and B.R. Lu. 2003. Genetic diversity in the northernmost Oryza rufipogon populations estimated by SSR markers. Theor. Appl. Genet. 107(8):1492-1499. https://doi.org/10.1007/s00122-003-1380-3
  66. Stohlgren, T.J., L.L. Loope and L.J. Makarick. 2013. Invasive plants in the United States national parks. In Foxcroft, L.C., P. Pysek, D.M. Richardson, and P. Genovesi (eds.), Plant Invasions in Protected Areas: Patterns, problems and challenges, Springer, Dordrecht, Netherlands. pp. 267-283.
  67. Sukhorukov, A.P. 2012. Taxonomic notes on Dysphania and Atriplex (Chenopodiaceae). Willdenowia 42(2):169-181. https://doi.org/10.3372/wi.42.42202
  68. Sukhorukov, A.P., M.V. Nilova, A.A. Krinitsina, M.A. Zaika, A.S. Erst and K.A. Shepherd. 2018. Molecular phylogenetic data and seed coat anatomy resolve the generic position of some critical Chenopodioideae (Chenopodiaceae-Amaranthaceae) with reduced perianth segments. PhytoKeys 109:103-128. https://doi.org/10.3897/phytokeys.109.28956
  69. Sukhorukov, A.P., M. Zhang and M. Kushunina. 2015. A new species of Dysphania (Chenopodioideae, Chenopodiaceae) from South-West Tibet and East Himalaya. Phytotaxa 203(2):138-146. https://doi.org/10.11646/phytotaxa.203.2.3
  70. Thomson, A.M., O.M. Vargas and C.W. Dick. 2017. Comparative analysis of 24 chloroplast genomes yields highly informative genetic markers for the Brazil nut family (Lecythidaceae). bioRxiv:192112.
  71. Verloove, F. 2013. New xenophytes from Gran Canaria (Canary Islands, Spain), with emphasis on naturalized and (potentially) invasive species. Collect Bot 32:59-82. https://doi.org/10.3989/collectbot.2013.v32.006
  72. Verloove, F. and J. Lambinon. 2006. The non-native vascular flora of Belgium: a new nothospecies and three new combinations. Syst. Geogr. Plants 217-220. https://doi.org/10.2307/3668622
  73. Wang, J., D. Ma and L. Tang. 2009. Allelopathy of volatile oil from Chenopodium ambrosioides L. on receptors. Southwest China Journal of Agricultural Sciences 22(3):777-780. https://doi.org/10.3969/j.issn.1001-4829.2009.03.053
  74. Wang, M.L., N.A. Barkley and T.M. Jenkins. 2009. Microsatellite markers in plants and insects. Part I: Applications of biotechnology. Genes, Genomes and Genomics 3(1):54-67.
  75. Wang, W., S. Chen and X. Zhang. 2018. Whole-genome comparison reveals divergent IR borders and mutation hotspots in chloroplast genomes of herbaceous bamboos (Bambusoideae: Olyreae). Molecules 23(7):1537. https://doi.org/10.3390/molecules23071537
  76. Weber, E. and D. Gut. 2004. Assessing the risk of potentially invasive plant species in central Europe. J. Nat. Conserv. 12(3):171-179. https://doi.org/10.1016/j.jnc.2004.04.002
  77. Wei, H., J. Liu, B. Li, Z. Zhan, Y. Chen, H. Tian, S. Lin and X. Gu. 2015. The toxicity and physiological effect of essential oil from Chenopodium ambrosioides against the diamondback moth, Plutella xylostella (Lepidoptera: Plutellidae). Crop. Prot. 76:68-74. https://doi.org/10.1016/j.cropro.2015.06.013
  78. Wilson, H.D., S.C. Barber and T. Walters. 1983. Loss of duplicate gene expression in tetraploid Chenopodium. Biochem. Syst. Ecol. 11(1):7-13. https://doi.org/10.1016/0305-1978(83)90022-4
  79. Wurschum, T., S.M. Langer, C.F.H. Longin, V. Korzun, E. Akhunov, E. Ebmeyer, R. Schachschneider, J. Schacht, E. Kazman and J.C. Reif. 2013. Population structure, genetic diversity and linkage disequilibrium in elite winter wheat assessed with SNP and SSR markers. Theor. Appl. Genet. 126(6):1477-1486. https://doi.org/10.1007/s00122-013-2065-1
  80. Xie, D.F., Y. Yu, Y.Q. Deng, J. Li, H.Y. Liu, S.D. Zhou and X.J. He. 2018. Comparative analysis of the chloroplast genomes of the Chinese endemic genus Urophysa and their contribution to chloroplast phylogeny and adaptive evolution. Int. J. Mol. Sci. 19(7):1847. https://doi.org/10.3390/ijms19071847
  81. Xu, H., S. Qiang, P. Genovesi, H. Ding, J. Wu, L. Meng, Z. Han, J. Miao, B. Hu and J. Guo. 2012. An inventory of invasive alien species in China. NeoBiota 15:1-26. https://doi.org/10.3897/neobiota.15.3575
  82. Yang, Y., T. Zhou, D. Duan, J. Yang, L. Feng and G. Zhao. 2016. Comparative analysis of the complete chloroplast genomes of five Quercus species. Front. Plant Sci. 7:959. https://doi.org/10.3389/fpls.2016.00959
  83. Zerbino, D.R. and E. Birney. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18(5):821-829. https://doi.org/10.1101/gr.074492.107
  84. Zhao, Q.Y., Y. Wang, Y.M. Kong, D. Luo, X. Li and P. Hao. 2011. Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study. BMC Bioinformatics 12(14):S2.
  85. Zhu, G., S.L. Mosyakin, and S.E. Clemants. 2003. Chenopodiaceae: In Zhengyi, W. and P.H. Raven (eds.), Flora of China. Vol. 5 (Ulmaceae through Basellaceae). Science Press, Beijing, China and Missouri Botanical Garden Press, St. Louis, USA. pp. 351-414.

피인용 문헌

  1. The Complete Chloroplast Genome of Arabidopsis thaliana Isolated in Korea (Brassicaceae): An Investigation of Intraspecific Variations of the Chloroplast Genome of Korean A. thaliana vol.2020, 2019, https://doi.org/10.1155/2020/3236461
  2. Comparative chloroplast genomics and phylogenetic analysis of the Viburnum dilatatum complex (Adoxaceae) in Korea vol.50, pp.1, 2019, https://doi.org/10.11110/kjpt.2020.50.1.8
  3. Database of National Species List of Korea: the taxonomical systematics platform for managing scientific names of Korean native species vol.9, pp.3, 2019, https://doi.org/10.12651/jsr.2020.9.3.233
  4. The Comparative Analyses of Six Complete Chloroplast Genomes of Morphologically Diverse Chenopodium album L. (Amaranthaceae) Collected in Korea vol.2021, 2021, https://doi.org/10.1155/2021/6643444