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3D Structure Prediction of Human 5-Hydroxytryptamine Receptor 7 (5-HT7R)

  • Madhavan, Thirumurthy (Department of Genetic Engineering, School of Bioengineering, SRM Institute of Science and Technology)
  • 투고 : 2018.04.17
  • 심사 : 2018.06.25
  • 발행 : 2018.06.30

초록

5-Hydroxytryptamine receptor 7 ($5-HT_7R$) is one of G-Protein coupled receptors, which is found to be involved in the pathophysiology of various neurological disorders including depression, sleep disorders, memory deficiency and neuropathic pain. After activation of $5-HT_7R$ by serotonin, it activates the production of the intracellular signaling molecule cyclic AMP. The availability of 3D structure of the receptor would enhance the development of new drugs. Hence, in the present study, homology modelling of human 5-hydroxytryptamine receptor 7 ($5-HT_7R$) was performed using comparative modelling (Easy Modeller) and threading (I-TASSER) approaches. The generated models were validated using Ramachandran plot and ERRAT plot and the best models were selected based on the validation results. The 3D model developed here could be useful for identifying crucial residues and further docking study.

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참고문헌

  1. P. Vanhoenacker, G. Haegeman, and J. E. Leysen, "$5-HT_7$ receptors: current knowledge and future prospects", Trends Pharmacol. Sci., Vol. 21, pp. 70-77, 2000. https://doi.org/10.1016/S0165-6147(99)01432-7
  2. M. Ruat, E. Traiffort, R. Leurs, J. Tardivel- Lacombe, J. Diaz, J. M. Arrang, and J. C. Schwartz, "Molecular cloning, characterization, and localiza- tion of a high-affinity serotonin receptor (5-HT7) activating cAMP formation", Proc. Natl. Acad. Sci. U.S.A., Vol. 90, pp. 8547-8551, 1993. https://doi.org/10.1073/pnas.90.18.8547
  3. J. A. Bard, J. Zgombick, N. Adham, P. Vaysse, T. A. Branchek, and R. L. Weinshank, "Cloning of a novel human serotonin receptor (5-HT7) positively linked to adenylatecyclase", J. Biol. Chem., Vol. 268, pp. 23422-23426, 1993.
  4. D. Hoyer, D. E. Clarke, J. R. Fozard, P. R. Hartig, G. R. Martin, E. J. Mylecharane, P. R. Saxena, and P. P. Humphrey, "International union of pharmacol- ogy classification of receptors for 5-hydroxytrypt-amine (Serotonin)", Pharmacol. Rev., Vol. 46, pp. 157-203, 1994.
  5. J. P. P. Foong and J. C Bornstein, "5-HT antagonists NAN-190 and SB 269970 block a2-adrenoceptors in the guinea pig", Neuroreport, Vol. 20, pp. 325-330, 2009. https://doi.org/10.1097/WNR.0b013e3283232caa
  6. G. Sarkisyan, A. J. Roberts, and P. B. Hedlund, "The $5-HT_7$ receptor as a mediator and modulator of anti- depressant-like behavior", Behav. Brain Res., Vol. 209, pp. 99-108, 2010. https://doi.org/10.1016/j.bbr.2010.01.022
  7. O. Mnie-Filali, C. Faure, L. Lambas-Senas, M. E. Mansari, H. Belblidia, E. Gondard, A. Etievant, H. Scarna, A. Didier, A. Berod, P. Blier, and N. Had-djeri, "Pharmacological blockade of $5-HT_7$ ecep- tors as a putative fast acting antidepressant strategy", Neuropsychopharmacology, Vol. 36, pp. 1275-1288, 2011. https://doi.org/10.1038/npp.2011.13
  8. G. S. Perez-Garcia and A. Meneses, "Effects of the potential $5-HT_7$ receptor agonist AS 19 in an autoshaping learning task", Behav. Brain Res., Vol. 163, pp. 136-140, 2005. https://doi.org/10.1016/j.bbr.2005.04.014
  9. V. S. Naumenko, N. K. Popova, E. Lacivita, M. Leopoldo, and E. G. Ponimaskin, "Interplay between serotonin 5-HT1A and 5-HT7 receptors in depressive disorders", CNS Neurosci. Ther., Vol. 20, pp. 582-590, 2014. https://doi.org/10.1111/cns.12247
  10. K. A. Krobert and F.O. Levy, "The human 5-HT7 serotonin receptor splice variants: constitutive activity and inverse agonist effects", Br. J. Pharmacol., Vol. 135, pp. 1563-1571, 2002. https://doi.org/10.1038/sj.bjp.0704588
  11. G. Beaudet, V. Bouet, C. Jozet-Alves, P. Schumann-Bard, F. Dauphin, E. Paizanis, M. Boulouard, and T. Freret, "Spatial memory deficit across aging: cur-rent insights of the role of $5-HT_7$ receptors", Front. Behav. Neurosci., Vol. 8, p. 448, 2014.
  12. A. Gasbarri and A. Pompili, "Serotonergic $5-HT_7$ receptors and cognition", Rev. Neurosci., Vol. 25, pp. 311-323, 2014.
  13. A. J. Roberts and P. B. Hedlund, "The $5-HT_7$ receptor in learning and memory", Hippocampus, Vol. 22, pp. 762-771, 2012. https://doi.org/10.1002/hipo.20938
  14. G. Sarkisyan and P.B. Hedlund, "The $5-HT_7$ receptor is involved in allocentricspatial memory information processing", Behav. Brain Res., Vol. 202, pp. 26-31, 2009. https://doi.org/10.1016/j.bbr.2009.03.011
  15. S. F. Altschul, W. Gish, W. Miller, E. W. Myers, and D. J. Lipman, "Basic local alignment search tool", J. Mol. Biol., Vol. 215, pp. 403-410, 1990. https://doi.org/10.1016/S0022-2836(05)80360-2
  16. H. M. Berman, J. Westbrook, Z. Feng, G. Gilliland, T. N. Bhat, H. Weissig, I. N. Shindyalov, and P.E. Bourne, "The protein data bank", Nucleic Acids Res., Vol. 28, pp. 235-242, 2000. https://doi.org/10.1093/nar/28.1.235
  17. J. D. Thompson, "CLUSTAL W: improving the sensitivity of progressive sequence weighting, position-specific gap penalties and weight matrix choice", Nucleic Acids Res., Vol. 22, pp. 4673-4680, 1994. https://doi.org/10.1093/nar/22.22.4673
  18. B. K. Kuntal, P. Aparoy, and P. Reddanna, "Easy-Modeller: A graphical interface to MODELLER", BMC Res. Notes, Vol. 3, p. 226, 2010. https://doi.org/10.1186/1756-0500-3-226
  19. N. Eswar, M. A. Marti-Renom, B. Webb, M. S. Madhusudhan, D. Eramian, M.-Y. Shen, U. Pieper, and A. Sali, "Comparative protein structure modelling With MODELLER", Curr. Protoc. Bioinfor-matics, Vol. 15, pp. 5-6, 2006.
  20. Y. Zhang, "I-TASSER server for protein 3D structure prediction", BMC Bioinformatics, Vol. 9, p. 40, 2008. https://doi.org/10.1186/1471-2105-9-40
  21. S. C. Lovell, I. W. Davis, W. B. Arendall III, P. I. W. Bakker, J. M. Word, M. G. Prisant, J. S. Richardson, and D. C. Richardson, "Structure validation by Ca geometry: f,y and Cb deviation", Proteins, Vol. 50, pp. 437-450, 2002.
  22. C. Colovos and T. O. Yeates, "Verification of protein structures: patterns of non-bonded atomic inter-actions", Protein Sci., Vol. 2, pp. 1511-1519, 1993. https://doi.org/10.1002/pro.5560020916
  23. T. madhavan, "Molecular Docking Analysis of Pro- tein Phosphatase 1D (PPM1D) Receptor with SL- 175, SL-176 and CDC5L", J. Chosun Natural Sci., Vol. 11, pp. 25-29, 2018.
  24. S. K. Nagarajan and T. Madhavan, "Theoretical Protein Structure Prediction of Glucagon-like Peptide 2 Receptor Using Homology Modelling", J. Chosun Natural Sci., Vol. 10, pp. 119-124, 2017.