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Guild Patterns of Basidiomycetes Community Associated With Quercus mongolica in Mt. Jeombong, Republic of Korea

  • Oh, Seung-Yoon (School of Biological Sciences and Institution of Microbiology, Seoul National University) ;
  • Cho, Hae Jin (School of Biological Sciences and Institution of Microbiology, Seoul National University) ;
  • Eimes, John A. (University College, Sungkyunkwan University) ;
  • Han, Sang-Kuk (Forest Biodiversity Division, Korea National Arboretum) ;
  • Kim, Chang Sun (Forest Biodiversity Division, Korea National Arboretum) ;
  • Lim, Young Woon (School of Biological Sciences and Institution of Microbiology, Seoul National University)
  • Received : 2017.11.28
  • Accepted : 2018.02.09
  • Published : 2018.03.31

Abstract

Depending on the mode of nutrition exploitation, major fungal guilds are distinguished as ectomycorrhizal and saprotrophic fungi. It is generally known that diverse environmental factors influence fungal communities; however, it is unclear how fungal communities respond differently to environment factors depend on fungal guilds. In this study, we investigated basidiomycetes communities associated with Quercus mongolica using 454 pyrosequencing. We attempted to detect guild pattern (ectomycorrhizal or saprotrophic fungal communities) by comparing the influence of geography and source (root and surrounding soil). A total of 515 mOTUs were detected from root (321) and soil (394) of Q. mongolica at three sites of Mt. Jeombong in Inje County. We found that patterns of diversity and community structure were different depending on the guilds. In terms of alpha diversity, only ectomycorrhizal fungi showed significant differences between sources. In terms of community structure, however, geography significantly influenced the ectomycorrhizal community, while source appeared to have a greater influence on the saprotrophic community. Therefore, a guildbased view will help to elucidates novel features of the relationship between environmental factors and fungal communities.

Keywords

References

  1. Mayer AM. Plant-fungal interactions: a plant physiologist's viewpoint. Phytochemistry. 1989;28:311-317. https://doi.org/10.1016/0031-9422(89)80002-0
  2. Bonfante P, Genre A. Mechanisms underlying beneficial plant-fungus interactions in mycorrhizal symbiosis. Nat Commun. 2010;1:48.
  3. Root RB. The niche exploitation pattern of the blue-gray gnatcatcher. Ecol Monogr. 1967;37:317-350. https://doi.org/10.2307/1942327
  4. Landeweert R, Hoffland E, Finlay RD, et al. Linking plants to rocks: ectomycorrhizal fungi mobilize nutrients from minerals. Trends Ecol Evol. 2001;16:248-254. https://doi.org/10.1016/S0169-5347(01)02122-X
  5. Rayner AD, Boddy L. Fungal decomposition of wood. Its biology and ecology. Chichester (NY): John Wiley & Sons Ltd.; 1988.
  6. Wardle DA, Bardgett RD, Klironomos JN, et al. Ecological linkages between aboveground and belowground biota. Science. 2004;304:1629-1633. https://doi.org/10.1126/science.1094875
  7. Hansen PA. Prediction of macrofungal occurrence in Swedish beech forests from soil and litter variable models. Plant Ecol. 1988;78:31-44. https://doi.org/10.1007/BF00045637
  8. Kernaghan G, Harper K. Community structure of ectomycorrhizal fungi across an alpine/subalpine ecotone. Ecography. 2001;24:181-188. https://doi.org/10.1034/j.1600-0587.2001.240208.x
  9. Jumpponen A, Egerton-Warburton LM. Mycorrhizal fungi in successional environments: a community assembly model incorporating host plant, environmental, and biotic filters. In: Dighton J, White JF, Oudemans P, editors. The fungal community: its organization and role in the ecosystem. Vol. 23. Boca Raton (FL): CRC Press; 2005. p. 139-168.
  10. Nguyen NH, Williams LJ, Vincent JB, et al. Ectomycorrhizal fungal diversity and saprotrophic fungal diversity are linked to different tree community attributes in a field-based tree experiment. Mol Ecol. 2016;25:4032-4046. https://doi.org/10.1111/mec.13719
  11. Plomion C, Fievet V. Oak genomics takes off... and enters the ecological genomics era. New Phytol. 2013;199:308-310. https://doi.org/10.1111/nph.12357
  12. Oldfield S, Eastwood A. The red list of oaks. Cambridge, UK: Fauna & Flora International; 2007.
  13. Mosca E, Montecchio L, Sella L, et al. Short-term effect of removing tree competition on the ectomycorrhizal status of a declining pedunculate oak forest (Quercus robur L.). For Ecol Manage. 2007;244:129-40. https://doi.org/10.1016/j.foreco.2007.04.019
  14. Smith ME, Douhan GW, Rizzo DM. Ectomycorrhizal community structure in a xeric Quercus woodland based on rDNA sequence analysis of sporocarps and pooled roots. New Phytol. 2007;174:847-863. https://doi.org/10.1111/j.1469-8137.2007.02040.x
  15. Walker JF, Miller OK Jr, Horton JL. Seasonal dynamics of ectomycorrhizal fungus assemblages on oak seedlings in the southeastern Appalachian Mountains. Mycorrhiza. 2008;18:123-132. https://doi.org/10.1007/s00572-008-0163-8
  16. Moser AM, Frank JL, D'allura JA, et al. Ectomycorrhizal communities of Quercus garryana are similar on serpentine and nonserpentine soils. Plant Soil. 2009;315:185-194. https://doi.org/10.1007/s11104-008-9743-9
  17. Richard F, Roy M, Shahin O, et al. Ectomycorrhizal communities in a Mediterranean forest ecosystem dominated by Quercus ilex: seasonal dynamics and response to drought in the surface organic horizon. Ann For Sci. 2011;68:57-68. https://doi.org/10.1007/s13595-010-0007-5
  18. Wang Q, He XH, Guo L-D. Ectomycorrhizal fungus communities of Quercus liaotungensis Koidz of different ages in a northern China temperate forest. Mycorrhiza. 2012;22:461-470. https://doi.org/10.1007/s00572-011-0423-x
  19. Toju H, Yamamoto S, Sato H, et al. Community composition of root-associated fungi in a Quercusdominated temperate forest: "codominance" of mycorrhizal and root-endophytic fungi. Ecol Evol. 2013;3:1281-1293. https://doi.org/10.1002/ece3.546
  20. Jang W-S, Park P-S, Han A-R, et al. The spatial distribution of Quercus mongolica and its association with other tree species in two Quercus mongolica stands in Mt. Jiri, Korea. J Ecol Environ. 2010;33:67-77. https://doi.org/10.5141/JEFB.2010.33.1.067
  21. He F, Yang B, Wang H, et al. Changes in composition and diversity of fungal communities along Quercus mongolica forests developments in Northeast China. Appl Soil Ecol. 2016;100:162-171. https://doi.org/10.1016/j.apsoil.2015.12.014
  22. Kim CS, Nam JW, Jo JW, et al. Studies on seasonal dynamics of soil-higher fungal communities in Mongolian oak-dominant Gwangneung forest in Korea. J Microbiol. 2016;54:14-22. https://doi.org/10.1007/s12275-016-5521-1
  23. Goldmann K, Schroter K, Pena R, et al. Divergent habitat filtering of root and soil fungal communities in temperate beech forests. Sci Rep. 2016;6:31439. https://doi.org/10.1038/srep31439
  24. Barrico L, Rodriguez-Echeverria S, Freitas H. Diversity of soil basidiomycete communities associated with Quercus suber L. in Portuguese montados. Eur J Soil Biol. 2010;46:280-287. https://doi.org/10.1016/j.ejsobi.2010.05.001
  25. Lee K-S, Cho D-S. Relationships between the spatial distribution of vegetation and microenviromnent in a temperate hardwood forest in Mt. Jeombong biosphere reserve area, Korea. Korean J Ecol. 2000;23:241-253.
  26. Lee W, Kim J, Jin G. The analysis of successional trends by topographic positions in the natural deciduous forest of Mt. Chumbong. J Korean For Soc. 2000;89:655-665.
  27. Rogers SO, Bendich AJ. Extraction of total cellular DNA from plants, algae and fungi. In: Gelvin SB, Schilperoort RA, editors. Plant molecular biology manual. Netherlands: Springer; 1994. p. 183-190.
  28. Gardes M, Bruns TD. ITS primers with enhanced specificity for basidiomycetes - application to the identification of mycorrhizae and rusts. Mol Ecol. 1993;2:113-118. https://doi.org/10.1111/j.1365-294X.1993.tb00005.x
  29. Caporaso JG, Kuczynski J, Stombaugh J, et al. QIIME allows analysis of high-throughput community sequencing data. Nat Methods. 2010;7:335-336. https://doi.org/10.1038/nmeth.f.303
  30. Edgar RC. Search and clustering orders of magnitude faster than BLAST. Bioinformatics. 2010;26:2460-2461. https://doi.org/10.1093/bioinformatics/btq461
  31. Koljalg U, Nilsson RH, Abarenkov K, et al. Towards a unified paradigm for sequence-based identification of fungi. Mol Ecol. 2013;22:5271-5277. https://doi.org/10.1111/mec.12481
  32. R Core Team. R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing; 2014.
  33. Wickham H. Ggplot2: elegant graphics for data analysis. Switzerland: Springer; 2016.
  34. McMurdie PJ, Holmes S. Phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data. PLoS One. 2013;8:e61217. https://doi.org/10.1371/journal.pone.0061217
  35. Nguyen NH, Song Z, Bates ST, et al. FUNGuild: an open annotation tool for parsing fungal community datasets by ecological guild. Fungal Ecol. 2016;20:241-248. https://doi.org/10.1016/j.funeco.2015.06.006
  36. Tedersoo L, Bahram M, Ryberg M, et al. Global biogeography of the ectomycorrhizal/sebacina lineage (Fungi, Sebacinales) as revealed from comparative phylogenetic analyses. Mol Ecol. 2014;23:4168-4183. https://doi.org/10.1111/mec.12849
  37. Selosse M-A, Dubois M-P, Alvarez N. Do Sebacinales commonly associate with plant roots as endophytes? Mycol Res. 2009;113:1062-1019. https://doi.org/10.1016/j.mycres.2009.07.004
  38. Long D, Liu J, Han Q, et al. Ectomycorrhizal fungal communities associated with Populus simonii and Pinus tabuliformis in the hilly-gully region of the Loess Plateau, China. Sci Rep. 2016;6:24336. https://doi.org/10.1038/srep24336
  39. O'Hanlon R, Harrington TJ. The macrofungal diversity and community of Atlantic oak (Quercus petraea and Q. robur) forests in Ireland. Anales Jard Bot Madrid. 2012;69:107-117. https://doi.org/10.3989/ajbm.2292
  40. Buee M, Reich M, Murat C, et al. 454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity. New Phytol. 2009;184:449-456. https://doi.org/10.1111/j.1469-8137.2009.03003.x
  41. Nel B, Steinberg C, Labuschagne N, et al. Isolation and characterization of nonpathogenic Fusarium oxysporum isolates from the rhizosphere of healthy banana plants. Plant Pathol. 2006;55:207-216. https://doi.org/10.1111/j.1365-3059.2006.01343.x
  42. Vinale F, Sivasithamparam K, Ghisalberti EL, et al. Trichoderma-plant-pathogen interactions. Soil Biol Biochem. 2008;40:1-10. https://doi.org/10.1016/j.soilbio.2007.07.002
  43. Fravel D, Olivain C, Alabouvette C. Fusarium oxysporum and its biocontrol. New Phytol. 2003;157:493-502. https://doi.org/10.1046/j.1469-8137.2003.00700.x
  44. Subke J-A, Hahn V, Battipaglia G, et al. Feedback interactions between needle litter decomposition and rhizosphere activity. Oecologia. 2004;139:551-559. https://doi.org/10.1007/s00442-004-1540-4
  45. Baum C, Hrynkiewicz K. Clonal and seasonal shifts in communities of saprotrophic microfungi and soil enzyme activities in the mycorrhizosphere of Salix spp. J Plant Nutr Soil Sci. 2006;169:481-487. https://doi.org/10.1002/jpln.200521922
  46. Cloete KJ, Valentine AJ, Stander MA, et al. Evidence of symbiosis between the soil yeast Cryptococcus laurentii and a sclerophyllous medicinal shrub, Agathosma betulina (Berg.) Pillans. Microb Ecol. 2009;57:624-632. https://doi.org/10.1007/s00248-008-9457-9
  47. Smith GR, Finlay RD, Stenlid J, et al. Growing evidence for facultative biotrophy in saprotrophic fungi: data from microcosm tests with 201 species of wood-decay basidiomycetes. New Phytol. 2017;215:511-513. https://doi.org/10.1111/nph.14665
  48. Vasiliauskas R, Menkis A, Finlay RD, et al. Wooddecay fungi in fine living roots of conifer seedlings. New Phytol. 2007;174:441-446. https://doi.org/10.1111/j.1469-8137.2007.02014.x
  49. Galante TE, Horton TR, Swaney DP. 95% of basidiospores fall within 1 m of the cap: a fieldand modeling-based study. Mycologia. 2011;103:1175-1183. https://doi.org/10.3852/10-388
  50. Taylor J, Jacobson D, Fisher M. The evolution of asexual fungi: reproduction, speciation and classification. Annu Rev Phytopathol. 1999;37:197-246. https://doi.org/10.1146/annurev.phyto.37.1.197
  51. Landeweert R, Leeflang P, Smit E, et al. Diversity of an ectomycorrhizal fungal community studied by a root tip and total soil DNA approach. Mycorrhiza. 2005;15:1-6. https://doi.org/10.1007/s00572-003-0284-z
  52. Van der Linde S, Haller S. Obtaining a spore free fungal community composition. Fungal Ecol. 2013;6:522-526. https://doi.org/10.1016/j.funeco.2013.10.001
  53. Schmit JP, Lodge DJ. Classical methods and modern analysis for studying fungal diversity. In: Dighton J, White JF, Oudemans P, editors. The fungal community: its organization and role in the ecosystem. Vol. 23. Boca Raton (FL): CRC Press; 2005. p. 193-214.
  54. Kjoller R. Disproportionate abundance between ectomycorrhizal root tips and their associated mycelia. FEMS Microbiol Ecol. 2006;58:214-224. https://doi.org/10.1111/j.1574-6941.2006.00166.x
  55. Genney DR, Anderson IC, Alexander IJ. Fine-scale distribution of pine ectomycorrhizas and their extramatrical mycelium. New Phytol. 2006;170:381-390. https://doi.org/10.1111/j.1469-8137.2006.01669.x
  56. Koide RT, Xu B, Sharda J. Contrasting belowground views of an ectomycorrhizal fungal community. New Phytol. 2005;166:251-262. https://doi.org/10.1111/j.1469-8137.2004.01313.x
  57. Dahlberg A, Jonsson L, Nylund J-E. Species diversity and distribution of biomass above and below ground among ectomycorrhizal fungi in an oldgrowth Norway spruce forest in south Sweden. Can J Bot. 1997;75:1323-1335. https://doi.org/10.1139/b97-844
  58. Gehring CA, Theimer TC, Whitham TG, et al. Ectomycorrhizal fungal community structure of pinyon pines growing in two environmental extremes. Ecology. 1998;79:1562-1572. https://doi.org/10.1890/0012-9658(1998)079[1562:EFCSOP]2.0.CO;2
  59. Horton TR, Bruns TD. The molecular revolution in ectomycorrhizal ecology: peeking into the blackbox. Mol Ecol. 2001;10:1855-1871. https://doi.org/10.1046/j.0962-1083.2001.01333.x

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